Wall clock time and date at job start Wed Apr 1 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99664 * 2 1 4 4 C 1.53003 * 109.47135 * 124.99848 * 3 2 1 5 5 N 1.46507 * 109.47045 * 180.02562 * 4 3 2 6 6 C 1.34817 * 126.59292 * 124.99862 * 5 4 3 7 7 C 1.36593 * 106.83354 * 180.02562 * 6 5 4 8 8 C 1.47529 * 125.76595 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00129 * 353.64617 * 8 7 6 10 10 N 1.34781 * 119.99588 * 173.64131 * 8 7 6 11 11 C 1.46493 * 120.00291 * 3.26107 * 10 8 7 12 12 C 1.46497 * 119.99337 * 183.25698 * 10 8 7 13 13 H 1.09000 * 110.21625 * 0.02562 * 12 10 8 14 14 C 1.50127 * 110.24718 * 121.93862 * 12 10 8 15 15 C 1.54636 * 110.93111 * 216.54060 * 14 12 10 16 16 C 1.54897 * 110.18804 * 321.33879 * 15 14 12 17 17 N 1.43435 * 116.08213 * 318.52425 * 16 15 14 18 18 C 1.36935 * 120.53734 * 271.59359 * 17 16 15 19 19 H 1.08001 * 119.99998 * 326.30634 * 18 17 16 20 20 C 1.38813 * 120.00068 * 146.30247 * 18 17 16 21 21 N 1.31616 * 119.99952 * 3.30110 * 20 18 17 22 22 Si 1.86800 * 119.99970 * 183.29323 * 20 18 17 23 23 H 1.48493 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46686 * 120.00351 * 22 20 18 25 25 H 1.48496 * 109.47211 * 240.00255 * 22 20 18 26 26 C 1.50168 * 118.92179 * 91.56470 * 17 16 15 27 27 C 1.46231 * 107.53523 * 289.59094 * 26 17 16 28 28 N 1.34396 * 108.46320 * 0.26322 * 7 6 5 29 29 N 1.28762 * 109.52099 * 359.55273 * 28 7 6 30 30 H 1.08005 * 119.99565 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00661 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00661 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47570 * 4.99432 * 3 2 1 34 34 H 1.09005 * 109.46982 * 244.99355 * 3 2 1 35 35 H 1.08992 * 109.47585 * 59.99544 * 4 3 2 36 36 H 1.09005 * 109.46783 * 299.99628 * 4 3 2 37 37 H 1.07995 * 126.58016 * 0.02562 * 6 5 4 38 38 H 1.09008 * 109.47033 * 84.04091 * 11 10 8 39 39 H 1.08994 * 109.47510 * 204.03876 * 11 10 8 40 40 H 1.08999 * 109.47269 * 324.04012 * 11 10 8 41 41 H 1.08995 * 109.21018 * 336.99752 * 14 12 10 42 42 H 1.09008 * 109.20928 * 96.30971 * 14 12 10 43 43 H 1.08994 * 109.43115 * 201.05721 * 15 14 12 44 44 H 1.09000 * 109.13015 * 81.42842 * 15 14 12 45 45 H 1.09004 * 108.15706 * 196.81150 * 16 15 14 46 46 H 1.09001 * 108.15974 * 80.24538 * 16 15 14 47 47 H 0.96999 * 120.00357 * 179.97438 * 21 20 18 48 48 H 1.09009 * 109.84141 * 170.08777 * 26 17 16 49 49 H 1.08997 * 109.90351 * 49.14126 * 26 17 16 50 50 H 1.09002 * 108.52511 * 297.16720 * 27 26 17 51 51 H 1.09003 * 108.52260 * 179.65192 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 7 3.7669 2.6023 1.1820 6 6 3.8478 3.4832 2.1994 7 6 4.6264 4.5182 1.7655 8 6 4.9860 5.7146 2.5503 9 8 4.4879 5.8963 3.6445 10 7 5.8669 6.6061 2.0543 11 6 6.4127 6.4247 0.7070 12 6 6.2782 7.7565 2.8626 13 1 5.7783 7.7346 3.8310 14 6 7.7681 7.7556 3.0474 15 6 8.1500 8.2566 4.4596 16 6 7.2224 9.4229 4.8820 17 7 6.9231 10.3903 3.8661 18 6 7.7379 11.4743 3.6758 19 1 8.2395 11.9272 4.5182 20 6 7.9191 11.9910 2.4003 21 7 7.2577 11.4804 1.3833 22 14 9.1014 13.4111 2.1271 23 1 9.7158 13.7998 3.4219 24 1 10.1663 12.9934 1.1800 25 1 8.3626 14.5687 1.5620 26 6 5.7020 10.1946 3.0141 27 6 5.9580 9.0566 2.1321 28 7 5.0043 4.2655 0.5008 29 7 4.5176 3.1345 0.1241 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8501 -0.9352 0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7398 0.5068 1.0923 36 1 2.4770 1.2358 2.1131 37 1 3.3856 3.3886 3.1708 38 1 5.7187 6.8382 -0.0249 39 1 7.3705 6.9393 0.6307 40 1 6.5550 5.3616 0.5127 41 1 8.1457 6.7422 2.9115 42 1 8.2222 8.4095 2.3028 43 1 9.1841 8.6009 4.4548 44 1 8.0455 7.4364 5.1699 45 1 7.6895 9.9425 5.7187 46 1 6.2823 8.9987 5.2347 47 1 7.3840 11.8417 0.4920 48 1 5.5184 11.0896 2.4195 49 1 4.8384 9.9865 3.6456 50 1 6.7971 9.3043 1.4819 51 1 5.0777 8.8962 1.5096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948840742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:09 Heat of formation + Delta-G solvation = 107.718603 kcal Electronic energy + Delta-G solvation = -31154.776815 eV Core-core repulsion = 27092.893815 eV Total energy + Delta-G solvation = -4061.883000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.27881 -41.06181 -39.15985 -37.33128 -36.69910 -34.86017 -34.37493 -32.94377 -32.44174 -31.84383 -30.23093 -28.08676 -27.77253 -26.03102 -25.52223 -24.90084 -24.04804 -22.77593 -21.60084 -21.06855 -20.74405 -20.03518 -18.63709 -18.51357 -17.60964 -17.25394 -17.06329 -16.84591 -16.24240 -16.13516 -15.76029 -15.68597 -15.44262 -15.29363 -15.01511 -14.78653 -14.41366 -14.06473 -13.95721 -13.68628 -13.58130 -13.52825 -13.42562 -13.11460 -12.99352 -12.90331 -12.68796 -12.55417 -12.51858 -12.02861 -12.00267 -11.85905 -11.76719 -11.72088 -11.59495 -11.30429 -11.18741 -11.02508 -10.98988 -10.39632 -10.38232 -10.25896 -9.54146 -8.46860 -7.78109 -5.33075 0.14339 0.62198 1.04786 1.41806 1.48623 1.51847 1.60236 1.98838 2.21058 2.55183 3.14181 3.35048 3.36048 3.65405 3.72931 3.80015 3.95042 4.00240 4.05108 4.17599 4.23115 4.23666 4.37132 4.39236 4.41519 4.51767 4.58983 4.65057 4.69435 4.78553 4.83338 4.90080 4.96717 4.98340 5.06950 5.10023 5.15759 5.23708 5.26999 5.37854 5.39329 5.45364 5.53495 5.67428 5.72926 5.74203 5.77230 5.83667 6.13700 6.41410 6.53567 6.85540 7.12058 7.24110 7.91850 8.48242 9.25108 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.002126 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.340167 B =13169.980822 C =13518.595557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.347 5.347 6 C 0.113 3.887 7 C -0.121 4.121 8 C 0.595 3.405 9 O -0.573 6.573 10 N -0.591 5.591 11 C 0.085 3.915 12 C 0.154 3.846 13 H 0.085 0.915 14 C -0.101 4.101 15 C -0.131 4.131 16 C 0.152 3.848 17 N -0.602 5.602 18 C -0.260 4.260 19 H 0.060 0.940 20 C -0.034 4.034 21 N -0.916 5.916 22 Si 0.960 3.040 23 H -0.273 1.273 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.171 3.829 27 C -0.111 4.111 28 N -0.220 5.220 29 N -0.087 5.087 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.236 0.764 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.248 0.752 48 H 0.071 0.929 49 H 0.006 0.994 50 H 0.078 0.922 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 -26.020 -1.332 28.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.141 4.141 4 C 0.000 4.000 5 N -0.132 5.132 6 C -0.045 4.045 7 C -0.260 4.260 8 C 0.382 3.618 9 O -0.453 6.453 10 N -0.320 5.320 11 C -0.058 4.058 12 C 0.052 3.948 13 H 0.103 0.897 14 C -0.140 4.140 15 C -0.172 4.172 16 C 0.024 3.976 17 N -0.324 5.324 18 C -0.391 4.391 19 H 0.078 0.922 20 C -0.231 4.231 21 N -0.562 5.562 22 Si 0.789 3.211 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.047 3.953 27 C -0.151 4.151 28 N -0.094 5.094 29 N -0.067 5.067 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.253 0.747 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.089 0.911 49 H 0.025 0.975 50 H 0.097 0.903 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.176 -26.107 -2.380 28.121 hybrid contribution 0.321 1.269 0.288 1.340 sum -9.854 -24.838 -2.092 26.803 Atomic orbital electron populations 1.24101 0.96135 1.02689 0.99369 1.22761 0.95927 0.97517 1.01377 1.20960 0.97791 0.97189 0.98167 1.22498 0.94763 0.79882 1.02884 1.50803 1.34672 1.18012 1.09691 1.23784 0.96411 0.88026 0.96310 1.21336 1.10442 1.00518 0.93706 1.17177 0.78620 0.81501 0.84500 1.90745 1.55242 1.77262 1.22048 1.47906 1.42831 1.24026 1.17268 1.22049 0.98585 1.03904 0.81246 1.20355 0.95636 0.84370 0.94466 0.89665 1.21553 0.94433 0.99482 0.98484 1.22676 1.00120 0.98717 0.95695 1.20529 0.96197 0.89841 0.91045 1.44188 1.24887 1.22815 1.40548 1.19387 1.21647 1.06307 0.91714 0.92214 1.25844 0.99885 1.01777 0.95566 1.70037 1.43303 1.43712 0.99113 0.85319 0.79109 0.79136 0.77498 1.19735 1.21973 1.22144 1.20020 0.85972 0.97663 0.91655 1.21069 1.01234 0.93547 0.99231 1.74758 1.15861 1.08084 1.10651 1.81889 1.09935 1.05116 1.09714 0.86968 0.88844 0.85202 0.91549 0.90475 0.86235 0.84403 0.74743 0.93054 0.91598 0.88096 0.92438 0.93483 0.93060 0.91156 0.94848 0.94834 0.94233 0.91083 0.97548 0.90322 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 14.32 67.78 0.97 -0.21 16 2 C -0.16 -0.90 9.52 25.65 0.24 -0.66 16 3 C -0.10 -0.86 5.86 29.85 0.17 -0.68 16 4 C 0.12 0.77 6.52 86.38 0.56 1.33 16 5 N -0.35 -5.55 3.69 -347.09 -1.28 -6.83 16 6 C 0.11 2.08 11.28 83.85 0.95 3.03 16 7 C -0.12 -3.32 6.69 40.82 0.27 -3.04 16 8 C 0.59 20.45 7.67 86.69 0.66 21.12 16 9 O -0.57 -22.15 16.23 -3.99 -0.06 -22.22 16 10 N -0.59 -21.11 2.63 -832.49 -2.19 -23.31 16 11 C 0.08 2.72 8.85 127.77 1.13 3.85 16 12 C 0.15 6.20 2.29 43.91 0.10 6.30 16 13 H 0.09 3.69 5.12 -2.39 -0.01 3.68 16 14 C -0.10 -3.97 4.31 30.23 0.13 -3.84 16 15 C -0.13 -5.01 6.40 31.80 0.20 -4.81 16 16 C 0.15 6.57 5.17 87.59 0.45 7.02 16 17 N -0.60 -30.31 2.60 -707.84 -1.84 -32.15 16 18 C -0.26 -14.16 9.59 84.03 0.81 -13.35 16 19 H 0.06 3.24 7.83 -2.91 -0.02 3.22 16 20 C -0.03 -1.87 5.33 84.86 0.45 -1.42 16 21 N -0.92 -51.06 8.85 21.65 0.19 -50.87 16 22 Si 0.96 44.54 29.56 68.60 2.03 46.57 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.17 8.47 5.23 83.58 0.44 8.91 16 27 C -0.11 -5.07 4.15 28.35 0.12 -4.95 16 28 N -0.22 -6.15 8.82 -50.00 -0.44 -6.59 16 29 N -0.09 -2.05 13.65 37.02 0.51 -1.55 16 30 H 0.11 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.09 0.67 7.84 -2.91 -0.02 0.65 16 32 H 0.13 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.07 0.70 7.79 -2.39 -0.02 0.68 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.14 0.09 8.08 -2.38 -0.02 0.08 16 37 H 0.24 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.07 2.14 7.24 -2.39 -0.02 2.13 16 40 H 0.10 2.99 5.32 -2.39 -0.01 2.97 16 41 H 0.06 2.04 7.88 -2.39 -0.02 2.02 16 42 H 0.05 2.13 6.84 -2.38 -0.02 2.11 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.03 1.41 8.00 -2.39 -0.02 1.40 16 46 H 0.03 1.40 6.90 -2.39 -0.02 1.39 16 47 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 48 H 0.07 3.94 6.10 -2.38 -0.01 3.92 16 49 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 50 H 0.08 4.01 5.22 -2.39 -0.01 3.99 16 51 H 0.02 1.12 8.02 -2.39 -0.02 1.11 16 Total: -1.00 -68.36 400.01 5.50 -62.86 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.92 Total: 15.49 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 7.67 Total: 18.58 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -5.05 Total: -121.29 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.22 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.36 5.50 -62.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948840742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.580 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds