Wall clock time and date at job start Wed Apr 1 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 119.99739 * 2 1 4 4 H 1.48496 * 109.47047 * 270.00173 * 3 2 1 5 5 H 1.48501 * 109.46867 * 149.99904 * 3 2 1 6 6 H 1.48502 * 109.47088 * 30.00309 * 3 2 1 7 7 C 1.38810 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00164 * 156.83393 * 7 2 1 9 9 N 1.36935 * 119.99843 * 336.83058 * 7 2 1 10 10 C 1.47425 * 125.65186 * 327.19606 * 9 7 2 11 11 C 1.54907 * 104.83303 * 204.09034 * 10 9 7 12 12 C 1.55148 * 101.58196 * 322.98488 * 11 10 9 13 13 C 1.47026 * 125.65108 * 146.88085 * 9 7 2 14 14 H 1.09000 * 109.87869 * 59.56055 * 13 9 7 15 15 C 1.53001 * 109.88144 * 298.40110 * 13 9 7 16 16 H 1.09008 * 109.49354 * 306.06868 * 15 13 9 17 17 C 1.53036 * 109.49588 * 185.97468 * 15 13 9 18 18 C 1.53043 * 109.53757 * 178.68249 * 17 15 13 19 19 C 1.53188 * 109.31437 * 61.36057 * 18 17 15 20 20 N 1.46922 * 108.77864 * 305.36464 * 19 18 17 21 21 C 1.34773 * 120.63431 * 233.62804 * 20 19 18 22 22 O 1.21282 * 119.99796 * 184.54723 * 21 20 19 23 23 C 1.50698 * 119.99913 * 4.55611 * 21 20 19 24 24 C 1.56252 * 116.68676 * 296.87728 * 23 21 20 25 25 C 1.56944 * 102.16381 * 200.71470 * 24 23 21 26 26 N 1.49521 * 105.46937 * 358.87381 * 25 24 23 27 27 C 1.49516 * 105.92519 * 289.05970 * 26 25 24 28 28 C 1.54662 * 105.28255 * 71.26251 * 27 26 25 29 29 C 1.50469 * 102.03436 * 35.47462 * 26 25 24 30 30 C 1.46930 * 118.73780 * 53.60873 * 20 19 18 31 31 H 0.96995 * 119.99641 * 178.09570 * 1 2 3 32 32 H 1.09006 * 110.36226 * 322.92723 * 10 9 7 33 33 H 1.08993 * 110.37154 * 85.24955 * 10 9 7 34 34 H 1.09007 * 111.00660 * 81.06215 * 11 10 9 35 35 H 1.09004 * 111.00591 * 204.87241 * 11 10 9 36 36 H 1.09002 * 110.72117 * 153.86310 * 12 11 10 37 37 H 1.08992 * 110.72441 * 276.96229 * 12 11 10 38 38 H 1.08996 * 109.46179 * 298.69596 * 17 15 13 39 39 H 1.08996 * 109.46691 * 58.66458 * 17 15 13 40 40 H 1.09004 * 109.49910 * 301.40908 * 18 17 15 41 41 H 1.09004 * 109.52773 * 181.33006 * 18 17 15 42 42 H 1.09005 * 109.58941 * 185.58173 * 19 18 17 43 43 H 1.09004 * 109.58814 * 65.15581 * 19 18 17 44 44 H 1.08998 * 110.66876 * 319.48081 * 24 23 21 45 45 H 1.08998 * 110.66300 * 82.61496 * 24 23 21 46 46 H 1.08998 * 109.92051 * 240.00444 * 25 24 23 47 47 H 1.08997 * 110.54301 * 118.06629 * 25 24 23 48 48 H 1.08994 * 110.28097 * 312.30847 * 27 26 25 49 49 H 1.09004 * 110.36059 * 190.25588 * 27 26 25 50 50 H 1.09005 * 110.66568 * 242.22723 * 28 27 26 51 51 H 1.08999 * 110.81016 * 119.16125 * 28 27 26 52 52 H 1.09004 * 111.90707 * 188.40588 * 29 26 25 53 53 H 1.09001 * 111.91146 * 62.19034 * 29 26 25 54 54 H 1.08995 * 109.59239 * 186.60524 * 30 20 19 55 55 H 1.08998 * 109.70507 * 66.24658 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 3.5478 1.4403 0.7001 6 1 1.4477 2.6527 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0251 -1.2396 -0.3685 9 7 1.4086 -2.3404 0.4656 10 6 0.4152 -2.4036 1.5530 11 6 0.5196 -3.8484 2.1020 12 6 0.7713 -4.6579 0.8026 13 6 1.6412 -3.7013 -0.0400 14 1 2.6931 -3.9636 0.0724 15 6 1.2354 -3.7856 -1.5128 16 1 0.2088 -3.4373 -1.6278 17 6 1.3396 -5.2362 -1.9890 18 6 0.9025 -5.3270 -3.4529 19 6 1.8333 -4.4673 -4.3139 20 7 1.8505 -3.1014 -3.7729 21 6 1.5780 -2.0456 -4.5650 22 8 1.6758 -0.9185 -4.1280 23 6 1.1517 -2.2656 -5.9936 24 6 2.1886 -2.9557 -6.9371 25 6 1.6758 -2.5318 -8.3585 26 7 0.4496 -1.7124 -8.1120 27 6 -0.5968 -2.6712 -7.6416 28 6 -0.1605 -3.0838 -6.2163 29 6 0.8059 -0.9887 -6.8419 30 6 2.1699 -2.9084 -2.3518 31 1 -0.4849 -0.8396 -0.0279 32 1 0.6604 -1.6827 2.3331 33 1 -0.5857 -2.2170 1.1640 34 1 1.3586 -3.9448 2.7912 35 1 -0.4119 -4.1535 2.5788 36 1 1.3093 -5.5804 1.0211 37 1 -0.1683 -4.8724 0.2937 38 1 2.3713 -5.5756 -1.8965 39 1 0.6940 -5.8666 -1.3776 40 1 -0.1209 -4.9646 -3.5502 41 1 0.9543 -6.3640 -3.7850 42 1 1.4680 -4.4490 -5.3407 43 1 2.8408 -4.8827 -4.2896 44 1 3.1931 -2.5778 -6.7466 45 1 2.1549 -4.0387 -6.8189 46 1 1.4271 -3.4175 -8.9430 47 1 2.4294 -1.9378 -8.8756 48 1 -0.6304 -3.5437 -8.2939 49 1 -1.5717 -2.1843 -7.6123 50 1 0.0409 -4.1541 -6.1704 51 1 -0.9174 -2.8042 -5.4835 52 1 -0.0451 -0.4456 -6.4307 53 1 1.6722 -0.3402 -6.9725 54 1 2.0268 -1.8616 -2.0840 55 1 3.2049 -3.1949 -2.1656 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963391908.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:27 Heat of formation + Delta-G solvation = -9.069287 kcal Electronic energy + Delta-G solvation = -33891.311097 eV Core-core repulsion = 29927.904138 eV Total energy + Delta-G solvation = -3963.406959 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.38500 -40.71368 -39.52129 -37.95250 -34.98353 -34.08968 -32.69519 -31.62348 -31.56326 -30.90020 -29.16649 -28.41288 -26.60582 -26.35784 -23.95943 -23.54460 -23.22132 -21.88182 -21.77780 -21.34639 -20.79432 -19.87862 -19.13579 -17.72148 -17.25913 -17.16294 -16.91530 -16.44867 -16.11495 -15.88221 -15.69284 -15.53531 -15.33626 -15.03916 -14.67452 -14.33126 -14.20504 -13.95163 -13.80773 -13.71669 -13.62471 -13.39790 -13.19616 -13.16154 -12.74789 -12.74350 -12.67768 -12.44727 -12.30529 -12.20331 -12.11991 -11.99915 -11.91561 -11.82786 -11.71511 -11.48281 -11.41742 -11.32191 -11.28746 -11.24555 -10.74374 -10.43716 -10.07315 -9.60242 -8.84776 -8.22398 -5.42401 1.45955 1.51675 1.56874 1.69018 1.97891 2.59130 2.74987 3.23902 3.32278 3.40819 3.49176 3.63422 3.76229 3.84392 3.87439 3.96340 3.97346 4.05564 4.09237 4.10816 4.19165 4.28416 4.31031 4.35857 4.37261 4.43756 4.48523 4.55568 4.59072 4.62677 4.67261 4.71782 4.78714 4.85013 4.90006 4.90455 4.92484 4.97353 4.99593 5.02549 5.05227 5.10314 5.10753 5.11540 5.19068 5.34403 5.40963 5.42488 5.49789 5.59522 5.61329 5.66340 5.84609 6.40306 6.47340 7.00168 7.19109 7.72395 8.38493 9.01875 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.004264 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.254685 B = 6565.204022 C = 8214.586700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.066 4.066 3 Si 1.101 2.899 4 H -0.299 1.299 5 H -0.268 1.268 6 H -0.285 1.285 7 C -0.315 4.315 8 H 0.041 0.959 9 N -0.613 5.613 10 C 0.138 3.862 11 C -0.122 4.122 12 C -0.109 4.109 13 C 0.153 3.847 14 H 0.032 0.968 15 C -0.084 4.084 16 H 0.023 0.977 17 C -0.109 4.109 18 C -0.128 4.128 19 C 0.089 3.911 20 N -0.603 5.603 21 C 0.530 3.470 22 O -0.589 6.589 23 C -0.132 4.132 24 C -0.127 4.127 25 C 0.017 3.983 26 N -0.471 5.471 27 C 0.017 3.983 28 C -0.129 4.129 29 C 0.035 3.965 30 C 0.116 3.884 31 H 0.255 0.745 32 H 0.013 0.987 33 H -0.003 1.003 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.049 0.951 52 H 0.066 0.934 53 H 0.078 0.922 54 H 0.074 0.926 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -18.974 -14.407 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.264 4.264 3 Si 0.927 3.073 4 H -0.227 1.227 5 H -0.193 1.193 6 H -0.211 1.211 7 C -0.445 4.445 8 H 0.059 0.941 9 N -0.338 5.338 10 C 0.013 3.987 11 C -0.160 4.160 12 C -0.147 4.147 13 C 0.047 3.953 14 H 0.050 0.950 15 C -0.105 4.105 16 H 0.041 0.959 17 C -0.147 4.147 18 C -0.166 4.166 19 C -0.032 4.032 20 N -0.334 5.334 21 C 0.319 3.681 22 O -0.469 6.469 23 C -0.137 4.137 24 C -0.166 4.166 25 C -0.112 4.112 26 N -0.191 5.191 27 C -0.111 4.111 28 C -0.168 4.168 29 C -0.094 4.094 30 C -0.006 4.006 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.106 0.894 48 H 0.132 0.868 49 H 0.098 0.902 50 H 0.127 0.873 51 H 0.068 0.932 52 H 0.085 0.915 53 H 0.097 0.903 54 H 0.092 0.908 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.752 -16.250 -14.796 22.047 hybrid contribution 0.218 -0.908 1.238 1.550 sum 1.969 -17.158 -13.558 21.956 Atomic orbital electron populations 1.70854 1.07491 1.29297 1.50643 1.26922 0.96648 1.04464 0.98351 0.83060 0.74740 0.73246 0.76250 1.22664 1.19328 1.21066 1.19441 0.95261 0.87763 1.41998 0.94135 1.44792 1.49603 1.02684 1.36710 1.21507 0.91569 0.96083 0.89544 1.22704 1.02202 0.93683 0.97430 1.22546 0.99675 0.97635 0.94825 1.21303 0.96900 0.85601 0.91544 0.94988 1.21690 0.96762 0.96053 0.95980 0.95882 1.21607 1.02583 0.93822 0.96658 1.21931 0.98597 1.01368 0.94726 1.22422 1.01438 0.79918 0.99391 1.48248 1.67984 1.07540 1.09616 1.20339 0.76285 0.84022 0.87498 1.90768 1.54291 1.25501 1.76375 1.23650 0.99786 0.99657 0.90613 1.23779 0.97176 1.01595 0.94028 1.24113 0.92795 0.98818 0.95438 1.69964 1.06667 1.17202 1.25271 1.23682 0.96604 0.97289 0.93553 1.23340 0.93937 1.00825 0.98714 1.24204 1.00767 0.95388 0.89055 1.21739 0.96976 1.02765 0.79113 0.93498 0.96803 0.98554 0.90939 0.89498 0.88199 0.91310 0.90773 0.90072 0.92987 0.86809 0.87009 0.89848 0.91548 0.87224 0.87117 0.89417 0.86840 0.90210 0.87304 0.93232 0.91506 0.90308 0.90818 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.18 13.22 21.65 0.29 -61.89 16 2 C -0.07 -4.08 5.20 84.86 0.44 -3.64 16 3 Si 1.10 57.63 29.98 68.60 2.06 59.69 16 4 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 5 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.32 -18.56 6.98 84.03 0.59 -17.98 16 8 H 0.04 2.47 7.58 -2.91 -0.02 2.44 16 9 N -0.61 -31.52 2.83 -668.25 -1.89 -33.41 16 10 C 0.14 6.66 5.80 86.85 0.50 7.17 16 11 C -0.12 -4.15 7.09 31.98 0.23 -3.92 16 12 C -0.11 -3.35 5.33 31.78 0.17 -3.18 16 13 C 0.15 6.08 2.82 45.34 0.13 6.21 16 14 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 15 C -0.08 -3.13 1.97 -10.72 -0.02 -3.15 16 16 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 17 C -0.11 -2.63 4.90 30.62 0.15 -2.48 16 18 C -0.13 -2.45 6.08 30.67 0.19 -2.27 16 19 C 0.09 1.87 5.64 86.36 0.49 2.35 16 20 N -0.60 -20.69 2.97 -818.91 -2.43 -23.13 16 21 C 0.53 20.64 7.19 87.66 0.63 21.27 16 22 O -0.59 -31.06 16.00 -3.04 -0.05 -31.11 16 23 C -0.13 -3.54 0.92 -49.21 -0.05 -3.58 16 24 C -0.13 -2.25 5.48 33.11 0.18 -2.07 16 25 C 0.02 0.26 6.67 87.18 0.58 0.84 16 26 N -0.47 -10.03 6.94 -851.63 -5.91 -15.93 16 27 C 0.02 0.30 6.61 86.36 0.57 0.87 16 28 C -0.13 -2.66 5.37 32.28 0.17 -2.49 16 29 C 0.04 1.02 6.08 87.06 0.53 1.55 16 30 C 0.12 4.93 5.00 86.36 0.43 5.36 16 31 H 0.25 17.02 6.10 -92.71 -0.57 16.46 16 32 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.00 -0.18 6.67 -2.39 -0.02 -0.19 16 34 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.04 7.34 -2.39 -0.02 2.02 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.71 6.76 -2.39 -0.02 1.70 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 1.76 2.18 -2.38 -0.01 1.76 16 43 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 1.26 6.05 -2.39 -0.01 1.25 16 46 H 0.11 1.04 7.69 -2.39 -0.02 1.02 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.11 1.22 7.69 -2.39 -0.02 1.20 16 49 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.11 1.52 6.08 -2.38 -0.01 1.51 16 51 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 54 H 0.07 4.13 4.31 -2.39 -0.01 4.12 16 55 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -84.53 395.25 -0.96 -85.49 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.07 Total: 19.42 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.91 Total: 0.87 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -9.95 Total: -134.36 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.05 Total: -31.11 kcal Atomic # 14 Polarization: 57.63 SS G_CDS: 2.06 Total: 59.69 kcal Total: -84.53 -0.96 -85.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963391908.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.421 kcal (2) G-P(sol) polarization free energy of solvation -84.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds