Wall clock time and date at job start Wed Apr 1 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99703 * 2 1 4 4 H 1.48505 * 109.47092 * 269.99791 * 3 2 1 5 5 H 1.48501 * 109.47578 * 30.00099 * 3 2 1 6 6 H 1.48503 * 109.46978 * 150.00384 * 3 2 1 7 7 C 1.38808 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99783 * 179.97438 * 9 7 2 11 11 C 1.53945 * 113.57787 * 204.99247 * 10 9 7 12 12 C 1.52911 * 86.78499 * 220.58557 * 11 10 9 13 13 C 1.52906 * 88.04089 * 24.89999 * 12 11 10 14 14 C 1.52910 * 121.13739 * 150.61988 * 12 11 10 15 15 C 1.53951 * 86.78268 * 100.81861 * 14 12 11 16 16 N 1.46502 * 113.58043 * 139.33465 * 15 14 12 17 17 C 1.34776 * 120.00025 * 156.42599 * 16 15 14 18 18 O 1.21284 * 119.99805 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99977 * 180.02562 * 17 16 15 20 20 H 1.09002 * 110.30762 * 299.26198 * 19 17 16 21 21 C 1.54984 * 110.34901 * 176.96001 * 19 17 16 22 22 C 1.53256 * 104.19095 * 243.62628 * 21 19 17 23 23 H 1.09004 * 110.29550 * 90.30251 * 22 21 19 24 24 C 1.52256 * 113.90071 * 215.59202 * 22 21 19 25 25 C 1.53576 * 107.55410 * 177.23538 * 24 22 21 26 26 C 1.52819 * 110.66355 * 303.85424 * 25 24 22 27 27 C 1.53629 * 110.66329 * 53.76183 * 26 25 24 28 28 N 1.45658 * 107.79949 * 302.64513 * 27 26 25 29 29 C 1.47093 * 116.54194 * 182.70114 * 28 27 26 30 30 C 1.53072 * 121.06734 * 259.16346 * 12 11 10 31 31 H 0.97003 * 119.99692 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00121 * 359.97438 * 9 7 2 33 33 H 1.08998 * 112.82303 * 336.08336 * 10 9 7 34 34 H 1.09007 * 113.66019 * 106.11580 * 11 10 9 35 35 H 1.09004 * 113.74867 * 335.07351 * 11 10 9 36 36 H 1.09002 * 113.65994 * 89.56961 * 13 12 11 37 37 H 1.08997 * 113.66205 * 220.62753 * 13 12 11 38 38 H 1.09000 * 113.66294 * 346.35253 * 14 12 11 39 39 H 1.08996 * 113.66389 * 215.29605 * 14 12 11 40 40 H 1.08998 * 113.58221 * 270.05606 * 15 14 12 41 41 H 0.97002 * 119.99467 * 336.42268 * 16 15 14 42 42 H 1.09006 * 110.48552 * 2.29992 * 21 19 17 43 43 H 1.08998 * 110.49256 * 124.81061 * 21 19 17 44 44 H 1.09001 * 109.83607 * 296.75309 * 24 22 21 45 45 H 1.09002 * 109.83774 * 57.72330 * 24 22 21 46 46 H 1.08996 * 109.19336 * 183.56182 * 25 24 22 47 47 H 1.09007 * 109.25143 * 64.17901 * 25 24 22 48 48 H 1.09002 * 109.23171 * 293.46786 * 26 25 24 49 49 H 1.09004 * 109.23158 * 174.05228 * 26 25 24 50 50 H 1.08997 * 109.79399 * 62.22142 * 27 26 25 51 51 H 1.09001 * 109.78985 * 183.07074 * 27 26 25 52 52 H 1.09003 * 110.60896 * 316.07559 * 29 28 27 53 53 H 1.08996 * 110.61590 * 78.90592 * 29 28 27 54 54 H 1.08991 * 113.66290 * 144.67866 * 30 12 11 55 55 H 1.09007 * 113.71171 * 13.57401 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2585 -4.8295 -0.5956 12 6 1.8350 -5.6841 0.5338 13 6 2.0049 -4.4006 1.3474 14 6 1.0629 -6.8791 1.0942 15 6 1.9785 -7.7652 0.2302 16 7 2.4153 -8.9900 0.9049 17 6 2.7971 -10.0596 0.1793 18 8 2.7787 -10.0083 -1.0323 19 6 3.2459 -11.3198 0.8734 20 1 4.1210 -11.1199 1.4918 21 6 3.5591 -12.4255 -0.1664 22 6 2.5321 -13.5234 0.1318 23 1 1.6276 -13.3645 -0.4555 24 6 3.0641 -14.9361 -0.0668 25 6 1.9486 -15.9119 0.3359 26 6 1.4882 -15.6433 1.7681 27 6 1.0930 -14.1691 1.9430 28 7 2.2442 -13.3535 1.5809 29 6 2.0946 -11.8987 1.7384 30 6 3.0146 -6.6278 0.2870 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 3.0648 -3.5637 -0.4068 34 1 1.5962 -5.1298 -1.5875 35 1 0.1779 -4.6986 -0.5374 36 1 1.1343 -4.1479 1.9527 37 1 2.9389 -4.3583 1.9077 38 1 0.0163 -6.9049 0.7909 39 1 1.1985 -7.0239 2.1659 40 1 1.5884 -7.9499 -0.7707 41 1 2.4296 -9.0311 1.8740 42 1 3.4275 -12.0450 -1.1793 43 1 4.5730 -12.8015 -0.0299 44 1 3.3288 -15.0880 -1.1132 45 1 3.9391 -15.0938 0.5637 46 1 2.3228 -16.9331 0.2642 47 1 1.1035 -15.7911 -0.3418 48 1 2.2990 -15.8818 2.4566 49 1 0.6286 -16.2746 1.9933 50 1 0.2528 -13.9323 1.2903 51 1 0.8193 -13.9811 2.9812 52 1 1.1271 -11.5692 1.3595 53 1 2.2144 -11.6114 2.7830 54 1 3.6996 -6.7020 1.1315 55 1 3.5250 -6.4532 -0.6602 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963800249.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:36 Heat of formation + Delta-G solvation = -8.154332 kcal Electronic energy + Delta-G solvation = -30389.923564 eV Core-core repulsion = 26426.556281 eV Total energy + Delta-G solvation = -3963.367284 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.85758 -41.18352 -39.81106 -37.26422 -35.83031 -35.26275 -33.60788 -33.19341 -31.51343 -30.41346 -28.19222 -26.77660 -26.67270 -26.11771 -25.04804 -23.63867 -22.92133 -22.31108 -21.46297 -21.01026 -20.61938 -19.43985 -18.64575 -18.22512 -17.35733 -16.91017 -16.72680 -16.45542 -16.14282 -15.88652 -15.77899 -15.52574 -15.33175 -15.21777 -14.83032 -14.51856 -14.31701 -13.98966 -13.66332 -13.63799 -13.54136 -13.44290 -13.29586 -13.08679 -12.96674 -12.83171 -12.61400 -12.36611 -12.29111 -12.26798 -12.18913 -12.05731 -11.89785 -11.69756 -11.55495 -11.42501 -11.30039 -11.20365 -11.06404 -10.93015 -10.81227 -10.65124 -10.00878 -9.45535 -8.97276 -7.94909 -5.22997 1.46894 1.48569 1.56977 1.57566 2.17456 2.56355 2.97115 3.36479 3.42589 3.49623 3.53033 3.59435 3.67665 3.83022 3.85617 3.95961 3.99879 4.01457 4.10196 4.21837 4.28034 4.29113 4.34028 4.42571 4.51238 4.54411 4.56082 4.61060 4.69023 4.79773 4.81284 4.81909 4.82264 4.91284 4.93365 4.99724 5.01695 5.04475 5.06729 5.08402 5.10721 5.12505 5.16481 5.25704 5.28222 5.31660 5.44398 5.48456 5.56221 5.63594 5.70506 5.88224 6.19353 6.27662 6.57829 7.25760 7.33262 8.11121 8.34125 9.28491 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.039533 B = 0.001528 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.097636 B =18314.988925 C =18557.067481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.729 5.729 10 C 0.145 3.855 11 C -0.124 4.124 12 C -0.090 4.090 13 C -0.136 4.136 14 C -0.116 4.116 15 C 0.129 3.871 16 N -0.703 5.703 17 C 0.517 3.483 18 O -0.584 6.584 19 C -0.105 4.105 20 H 0.131 0.869 21 C -0.108 4.108 22 C 0.063 3.937 23 H 0.032 0.968 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.111 4.111 27 C 0.050 3.950 28 N -0.523 5.523 29 C 0.057 3.943 30 C -0.119 4.119 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.417 0.583 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.024 0.976 51 H 0.086 0.914 52 H 0.034 0.966 53 H 0.112 0.888 54 H 0.102 0.898 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -35.427 7.131 36.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.367 5.367 10 C 0.036 3.964 11 C -0.163 4.163 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.154 4.154 15 C 0.024 3.976 16 N -0.353 5.353 17 C 0.304 3.696 18 O -0.463 6.463 19 C -0.127 4.127 20 H 0.149 0.851 21 C -0.146 4.146 22 C -0.046 4.046 23 H 0.050 0.950 24 C -0.140 4.140 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.078 4.078 28 N -0.247 5.247 29 C -0.072 4.072 30 C -0.157 4.157 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.043 0.957 51 H 0.104 0.896 52 H 0.052 0.948 53 H 0.130 0.870 54 H 0.120 0.880 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.248 -35.440 6.636 36.594 hybrid contribution -1.033 1.756 -0.454 2.088 sum 5.215 -33.684 6.181 34.641 Atomic orbital electron populations 1.69822 1.06620 1.26010 1.59670 1.25564 0.96386 1.01098 1.03830 0.85150 0.77757 0.79546 0.77381 1.21541 1.22166 1.19369 1.19717 0.91520 0.85500 1.40917 0.90657 1.42599 1.05333 1.01079 1.87643 1.21927 0.95059 0.83828 0.95581 1.23086 0.99836 0.95898 0.97472 1.21920 0.97922 0.92101 0.97132 1.23383 1.00996 0.95334 0.97996 1.23132 0.98673 0.92941 1.00664 1.22324 0.95869 0.82125 0.97259 1.45914 1.66121 1.12483 1.10811 1.21020 0.75825 0.85448 0.87321 1.90679 1.55457 1.83992 1.16220 1.22332 1.01008 0.91430 0.97931 0.85122 1.22163 1.00179 0.93517 0.98773 1.22432 0.97121 0.96276 0.88728 0.94965 1.21473 0.98834 0.92100 1.01581 1.21588 0.98063 0.99714 0.96587 1.21565 1.01803 0.94417 0.97083 1.22118 0.90526 0.94042 1.01098 1.63990 1.37470 1.06084 1.17201 1.22810 0.95377 0.87976 1.01014 1.23189 0.96136 0.93819 1.02577 0.94064 0.79503 0.91336 0.91809 0.90763 0.91503 0.91804 0.90837 0.87316 0.89147 0.74569 0.91231 0.89183 0.91190 0.90460 0.90687 0.92986 0.91045 0.90566 0.95725 0.89581 0.94813 0.87017 0.87987 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.02 13.06 21.65 0.28 -59.73 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.55 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.24 -13.79 9.97 84.03 0.84 -12.96 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -37.42 5.40 -319.93 -1.73 -39.14 16 10 C 0.15 5.79 4.48 45.63 0.20 6.00 16 11 C -0.12 -4.09 7.59 30.88 0.23 -3.86 16 12 C -0.09 -2.34 1.11 -52.26 -0.06 -2.40 16 13 C -0.14 -4.45 7.64 30.89 0.24 -4.21 16 14 C -0.12 -2.32 7.59 30.89 0.23 -2.09 16 15 C 0.13 2.71 4.21 45.63 0.19 2.90 16 16 N -0.70 -11.27 5.30 -439.50 -2.33 -13.60 16 17 C 0.52 10.33 7.05 87.66 0.62 10.95 16 18 O -0.58 -17.29 14.89 -3.04 -0.05 -17.34 16 19 C -0.11 -1.44 3.48 -10.11 -0.04 -1.47 16 20 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 21 C -0.11 -1.71 6.22 31.36 0.20 -1.51 16 22 C 0.06 0.92 2.50 44.40 0.11 1.04 16 23 H 0.03 0.60 7.98 -2.38 -0.02 0.58 16 24 C -0.10 -1.19 5.64 30.54 0.17 -1.02 16 25 C -0.12 -1.22 5.94 30.73 0.18 -1.04 16 26 C -0.11 -1.03 6.06 30.75 0.19 -0.85 16 27 C 0.05 0.57 5.87 86.75 0.51 1.08 16 28 N -0.52 -6.75 4.84 -864.17 -4.18 -10.93 16 29 C 0.06 0.66 6.17 87.02 0.54 1.20 16 30 C -0.12 -2.67 7.65 30.94 0.24 -2.44 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.37 20.52 7.92 -92.71 -0.73 19.79 16 33 H 0.07 2.77 8.10 -2.39 -0.02 2.75 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.69 8.11 -2.39 -0.02 1.67 16 40 H 0.09 2.36 7.50 -2.39 -0.02 2.35 16 41 H 0.42 3.93 8.70 -92.71 -0.81 3.12 16 42 H 0.07 1.48 6.50 -2.38 -0.02 1.46 16 43 H 0.09 1.19 8.00 -2.39 -0.02 1.17 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.02 0.33 7.99 -2.39 -0.02 0.31 16 51 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.03 0.48 7.88 -2.39 -0.02 0.46 16 53 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 55 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -70.59 424.11 -1.59 -72.17 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.67 Total: 34.69 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.06 Total: -14.67 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.96 Total: -123.42 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -70.59 -1.59 -72.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963800249.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.019 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds