Wall clock time and date at job start Wed Apr 1 2020 04:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99532 * 2 1 4 4 C 1.38395 * 120.00269 * 180.02562 * 2 1 3 5 5 C 1.39890 * 119.99979 * 14.42208 * 4 2 1 6 6 N 1.31451 * 120.01910 * 179.76840 * 5 4 2 7 7 C 1.33285 * 120.00501 * 0.46668 * 6 5 4 8 8 C 1.47815 * 120.00292 * 179.79103 * 7 6 5 9 9 O 1.21561 * 120.00143 * 179.72339 * 8 7 6 10 10 N 1.34781 * 119.99968 * 359.72008 * 8 7 6 11 11 C 1.46504 * 119.99887 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46840 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.44699 * 65.00536 * 12 11 10 14 14 C 1.54867 * 109.42665 * 184.93346 * 12 11 10 15 15 C 1.47098 * 110.32098 * 191.28422 * 14 12 11 16 16 C 1.52566 * 114.32870 * 297.19177 * 15 14 12 17 17 C 1.50878 * 109.34778 * 85.02767 * 16 15 14 18 18 C 1.53944 * 110.09605 * 268.11024 * 17 16 15 19 19 N 1.44572 * 109.45473 * 305.05744 * 12 11 10 20 20 C 1.36932 * 118.64259 * 329.24407 * 19 12 11 21 21 H 1.08008 * 119.99992 * 327.28860 * 20 19 12 22 22 C 1.38812 * 120.00374 * 147.28706 * 20 19 12 23 23 N 1.31617 * 119.99712 * 348.42369 * 22 20 19 24 24 Si 1.86798 * 120.00220 * 168.42907 * 22 20 19 25 25 H 1.48497 * 109.47238 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47148 * 120.00037 * 24 22 20 27 27 H 1.48504 * 109.47019 * 240.00052 * 24 22 20 28 28 C 1.39414 * 119.99436 * 359.51295 * 7 6 5 29 29 N 1.32048 * 119.98668 * 0.25121 * 28 7 6 30 30 H 1.09007 * 109.46890 * 181.75087 * 1 2 3 31 31 H 1.09000 * 109.46718 * 301.74716 * 1 2 3 32 32 H 1.08996 * 109.47723 * 61.74670 * 1 2 3 33 33 H 1.08997 * 109.47464 * 270.00297 * 3 2 1 34 34 H 1.08998 * 109.47388 * 30.00252 * 3 2 1 35 35 H 1.08998 * 109.47118 * 150.00532 * 3 2 1 36 36 H 1.08003 * 119.99373 * 359.97438 * 5 4 2 37 37 H 0.96999 * 119.99973 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.46617 * 60.00419 * 11 10 8 39 39 H 1.08997 * 109.47159 * 300.00172 * 11 10 8 40 40 H 1.09002 * 109.33112 * 311.54475 * 14 12 11 41 41 H 1.09000 * 109.32996 * 71.02590 * 14 12 11 42 42 H 1.09000 * 108.51088 * 175.93934 * 15 14 12 43 43 H 1.09001 * 108.38989 * 58.35552 * 15 14 12 44 44 H 1.09000 * 109.49331 * 325.06329 * 16 15 14 45 45 H 1.09006 * 109.49192 * 204.98797 * 16 15 14 46 46 H 1.09004 * 109.36914 * 147.92021 * 17 16 15 47 47 H 1.08999 * 109.26711 * 28.23901 * 17 16 15 48 48 H 1.09000 * 108.94824 * 279.87600 * 18 17 16 49 49 H 1.08992 * 108.94855 * 161.24845 * 18 17 16 50 50 H 0.97001 * 119.99920 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.00240 * 180.27896 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1571 -1.1985 -0.0005 5 6 1.4907 -2.3908 -0.3028 6 7 2.1486 -3.5288 -0.3079 7 6 3.4490 -3.5482 -0.0159 8 6 4.1877 -4.8285 -0.0171 9 8 5.3748 -4.8456 0.2443 10 7 3.5452 -5.9771 -0.3080 11 6 4.2773 -7.2461 -0.3086 12 6 3.3217 -8.3858 -0.6673 13 1 2.9693 -8.2555 -1.6905 14 6 4.0655 -9.7388 -0.5465 15 6 3.2611 -10.8186 -1.1387 16 6 1.9241 -11.0596 -0.4444 17 6 0.8923 -10.1115 -1.0039 18 6 0.8460 -8.8234 -0.1621 19 7 2.1932 -8.3703 0.2362 20 6 2.3819 -7.9171 1.5145 21 1 3.3289 -8.0751 2.0092 22 6 1.3561 -7.2547 2.1746 23 7 0.2917 -6.8603 1.5085 24 14 1.4863 -6.9230 4.0083 25 1 2.7716 -7.4636 4.5191 26 1 1.4329 -5.4591 4.2515 27 1 0.3576 -7.5833 4.7122 28 6 4.1136 -2.3602 0.2850 29 7 3.4534 -1.2166 0.2855 30 1 -0.3633 -1.0273 0.0314 31 1 -0.3633 0.5407 0.8739 32 1 -0.3634 0.4864 -0.9052 33 1 2.3790 1.5835 -1.0276 34 1 1.6083 2.0283 0.5139 35 1 3.1498 1.1385 0.5137 36 1 0.4361 -2.3759 -0.5353 37 1 2.5980 -5.9634 -0.5168 38 1 4.6981 -7.4231 0.6812 39 1 5.0816 -7.2011 -1.0428 40 1 5.0207 -9.6733 -1.0674 41 1 4.2457 -9.9588 0.5058 42 1 3.8406 -11.7411 -1.1033 43 1 3.0693 -10.5715 -2.1828 44 1 2.0339 -10.8871 0.6262 45 1 1.6048 -12.0875 -0.6168 46 1 -0.0866 -10.5906 -0.9856 47 1 1.1533 -9.8620 -2.0324 48 1 0.2550 -9.0079 0.7349 49 1 0.3660 -8.0371 -0.7446 50 1 -0.4253 -6.3977 1.9698 51 1 5.1682 -2.3752 0.5172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968858989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:36 Heat of formation + Delta-G solvation = 48.736773 kcal Electronic energy + Delta-G solvation = -32011.473245 eV Core-core repulsion = 27947.032601 eV Total energy + Delta-G solvation = -4064.440644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.98083 -38.92691 -37.92413 -36.85631 -34.47522 -33.92443 -33.32810 -31.65697 -30.75926 -30.54614 -28.60967 -27.19267 -26.13485 -25.34360 -24.00879 -23.41139 -22.80557 -21.77466 -20.08350 -19.60768 -19.11006 -17.79745 -17.61827 -17.13634 -15.95951 -15.71992 -15.47593 -15.16924 -14.83333 -14.68084 -14.54248 -14.42744 -14.06749 -13.81276 -13.59087 -13.49310 -13.13846 -12.79031 -12.69776 -12.67013 -12.48287 -12.16536 -12.01121 -11.88089 -11.43856 -11.26591 -11.20871 -11.07044 -11.00624 -10.83395 -10.52685 -10.15710 -10.02133 -9.99959 -9.93668 -9.71634 -9.62245 -9.50555 -9.43148 -8.79309 -8.37539 -8.13948 -7.69575 -6.54706 -5.75012 -3.24097 0.87714 1.37609 2.65354 3.29938 3.37100 3.46049 3.49050 3.87956 4.24765 4.35797 4.44870 4.51875 4.57388 4.92438 5.05166 5.08858 5.27401 5.29581 5.38136 5.39979 5.42109 5.46611 5.51250 5.56811 5.67072 5.69795 5.73617 5.95910 6.07631 6.15707 6.20329 6.28037 6.39134 6.42838 6.58270 6.62344 6.68360 6.70557 6.76540 6.81564 6.89278 7.01617 7.05740 7.15691 7.33987 7.45870 7.56286 7.72135 7.89159 7.96629 8.47969 8.52749 9.00305 9.28364 9.91160 10.39204 11.31132 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.003412 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.510180 B = 8204.222023 C = 8837.292545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.607 5.607 3 C 0.095 3.905 4 C 0.361 3.639 5 C -0.001 4.001 6 N -0.355 5.355 7 C -0.029 4.029 8 C 0.574 3.426 9 O -0.565 6.565 10 N -0.666 5.666 11 C 0.128 3.872 12 C 0.174 3.826 13 H 0.044 0.956 14 C -0.136 4.136 15 C -0.100 4.100 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.182 3.818 19 N -0.581 5.581 20 C -0.253 4.253 21 H 0.060 0.940 22 C 0.021 3.979 23 N -0.892 5.892 24 Si 0.887 3.113 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.291 1.291 28 C 0.157 3.843 29 N -0.509 5.509 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.422 0.578 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.068 0.932 49 H 0.026 0.974 50 H 0.250 0.750 51 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 8.907 -6.663 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.321 5.321 3 C -0.048 4.048 4 C 0.123 3.877 5 C -0.173 4.173 6 N -0.071 5.071 7 C -0.170 4.170 8 C 0.358 3.642 9 O -0.446 6.446 10 N -0.315 5.315 11 C 0.003 3.997 12 C 0.065 3.935 13 H 0.062 0.938 14 C -0.177 4.177 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.182 4.182 18 C 0.058 3.942 19 N -0.303 5.303 20 C -0.383 4.383 21 H 0.077 0.923 22 C -0.179 4.179 23 N -0.535 5.535 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.221 1.221 27 H -0.218 1.218 28 C -0.004 4.004 29 N -0.232 5.232 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.185 0.815 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.044 0.956 50 H 0.060 0.940 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.233 9.066 -6.453 11.131 hybrid contribution -0.648 0.290 1.130 1.334 sum -0.415 9.356 -5.324 10.773 Atomic orbital electron populations 1.21857 0.77808 1.03897 1.01832 1.46051 1.05442 1.02846 1.77803 1.21628 0.97968 0.83837 1.01398 1.19613 0.90128 0.87562 0.90446 1.23265 1.01660 0.86989 1.05357 1.68303 1.06700 1.27163 1.04897 1.21894 0.91321 0.96036 1.07765 1.17421 0.85945 0.82994 0.77889 1.90713 1.14948 1.86990 1.51902 1.45560 1.14742 1.05063 1.66099 1.21525 0.93814 0.83009 1.01310 1.20507 0.88456 0.90989 0.93573 0.93835 1.21377 0.97688 0.97383 1.01270 1.20288 0.96567 0.97727 0.99214 1.20945 0.94613 0.96949 1.01873 1.22073 0.97692 0.98876 0.99563 1.20957 0.86001 0.90080 0.97200 1.43639 1.04366 1.72919 1.09407 1.18967 0.99720 1.29991 0.89665 0.92276 1.25000 0.98069 0.97338 0.97491 1.70003 1.08713 1.41026 1.33772 0.86457 0.77492 0.77468 0.86790 1.20321 1.22063 1.21751 1.23448 1.00915 0.86139 0.89933 1.68048 1.06983 1.29272 1.18867 0.89818 0.91840 0.91900 0.93257 0.91632 0.89943 0.81464 0.73953 0.91228 0.93098 0.93330 0.91855 0.94157 0.93551 0.90784 0.94289 0.93347 0.93803 0.91394 0.95591 0.93957 0.80415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.55 59.85 0.63 1.32 16 2 N -0.61 -6.70 3.37 -189.51 -0.64 -7.34 16 3 C 0.09 0.84 10.62 59.84 0.64 1.48 16 4 C 0.36 5.25 7.29 -155.01 -1.13 4.12 16 5 C 0.00 -0.01 10.38 -17.10 -0.18 -0.19 16 6 N -0.36 -6.69 9.69 -9.44 -0.09 -6.78 16 7 C -0.03 -0.56 6.74 -82.88 -0.56 -1.12 16 8 C 0.57 12.08 7.80 -12.34 -0.10 11.99 16 9 O -0.56 -12.63 16.33 5.31 0.09 -12.55 16 10 N -0.67 -14.04 4.71 -61.26 -0.29 -14.33 16 11 C 0.13 2.55 4.52 -4.04 -0.02 2.53 16 12 C 0.17 3.35 2.19 -67.98 -0.15 3.20 16 13 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 14 C -0.14 -2.33 5.06 -28.58 -0.14 -2.47 16 15 C -0.10 -1.59 5.16 -29.79 -0.15 -1.74 16 16 C -0.11 -1.81 5.51 -28.02 -0.15 -1.96 16 17 C -0.14 -2.56 5.71 -27.30 -0.16 -2.72 16 18 C 0.18 3.99 4.65 -2.94 -0.01 3.97 16 19 N -0.58 -12.85 1.75 -164.47 -0.29 -13.14 16 20 C -0.25 -6.34 7.47 -15.06 -0.11 -6.45 16 21 H 0.06 1.56 6.92 -52.48 -0.36 1.19 16 22 C 0.02 0.54 4.94 -17.43 -0.09 0.46 16 23 N -0.89 -23.69 11.21 55.49 0.62 -23.07 16 24 Si 0.89 21.73 29.57 -169.99 -5.03 16.71 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 28 C 0.16 2.64 10.76 -17.02 -0.18 2.46 16 29 N -0.51 -8.01 9.24 -11.96 -0.11 -8.12 16 30 H 0.08 0.67 5.54 -51.92 -0.29 0.38 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.08 0.85 7.23 -51.93 -0.38 0.47 16 36 H 0.17 2.11 6.04 -52.48 -0.32 1.80 16 37 H 0.42 9.48 7.42 -40.82 -0.30 9.17 16 38 H 0.07 1.52 6.94 -51.93 -0.36 1.16 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 44 H 0.07 1.45 7.48 -51.93 -0.39 1.06 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 48 H 0.07 1.68 6.68 -51.93 -0.35 1.33 16 49 H 0.03 0.62 7.97 -51.93 -0.41 0.20 16 50 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 51 H 0.18 2.73 7.63 -52.49 -0.40 2.33 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -29.54 398.74 -9.69 -39.23 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.09 Total: 8.51 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -1.87 Total: 14.87 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.80 Total: -72.77 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.54 -9.69 -39.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968858989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.967 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds