Wall clock time and date at job start Wed Apr 1 2020 04:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99532 * 2 1 4 4 C 1.38395 * 120.00269 * 180.02562 * 2 1 3 5 5 C 1.39890 * 119.99979 * 14.42208 * 4 2 1 6 6 N 1.31451 * 120.01910 * 179.76840 * 5 4 2 7 7 C 1.33285 * 120.00501 * 0.46668 * 6 5 4 8 8 C 1.47815 * 120.00292 * 179.79103 * 7 6 5 9 9 O 1.21561 * 120.00143 * 179.72339 * 8 7 6 10 10 N 1.34781 * 119.99968 * 359.72008 * 8 7 6 11 11 C 1.46504 * 119.99887 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46840 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.44699 * 65.00536 * 12 11 10 14 14 C 1.54867 * 109.42665 * 184.93346 * 12 11 10 15 15 C 1.47098 * 110.32098 * 191.28422 * 14 12 11 16 16 C 1.52566 * 114.32870 * 297.19177 * 15 14 12 17 17 C 1.50878 * 109.34778 * 85.02767 * 16 15 14 18 18 C 1.53944 * 110.09605 * 268.11024 * 17 16 15 19 19 N 1.44572 * 109.45473 * 305.05744 * 12 11 10 20 20 C 1.36932 * 118.64259 * 329.24407 * 19 12 11 21 21 H 1.08008 * 119.99992 * 327.28860 * 20 19 12 22 22 C 1.38812 * 120.00374 * 147.28706 * 20 19 12 23 23 N 1.31617 * 119.99712 * 348.42369 * 22 20 19 24 24 Si 1.86798 * 120.00220 * 168.42907 * 22 20 19 25 25 H 1.48497 * 109.47238 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47148 * 120.00037 * 24 22 20 27 27 H 1.48504 * 109.47019 * 240.00052 * 24 22 20 28 28 C 1.39414 * 119.99436 * 359.51295 * 7 6 5 29 29 N 1.32048 * 119.98668 * 0.25121 * 28 7 6 30 30 H 1.09007 * 109.46890 * 181.75087 * 1 2 3 31 31 H 1.09000 * 109.46718 * 301.74716 * 1 2 3 32 32 H 1.08996 * 109.47723 * 61.74670 * 1 2 3 33 33 H 1.08997 * 109.47464 * 270.00297 * 3 2 1 34 34 H 1.08998 * 109.47388 * 30.00252 * 3 2 1 35 35 H 1.08998 * 109.47118 * 150.00532 * 3 2 1 36 36 H 1.08003 * 119.99373 * 359.97438 * 5 4 2 37 37 H 0.96999 * 119.99973 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.46617 * 60.00419 * 11 10 8 39 39 H 1.08997 * 109.47159 * 300.00172 * 11 10 8 40 40 H 1.09002 * 109.33112 * 311.54475 * 14 12 11 41 41 H 1.09000 * 109.32996 * 71.02590 * 14 12 11 42 42 H 1.09000 * 108.51088 * 175.93934 * 15 14 12 43 43 H 1.09001 * 108.38989 * 58.35552 * 15 14 12 44 44 H 1.09000 * 109.49331 * 325.06329 * 16 15 14 45 45 H 1.09006 * 109.49192 * 204.98797 * 16 15 14 46 46 H 1.09004 * 109.36914 * 147.92021 * 17 16 15 47 47 H 1.08999 * 109.26711 * 28.23901 * 17 16 15 48 48 H 1.09000 * 108.94824 * 279.87600 * 18 17 16 49 49 H 1.08992 * 108.94855 * 161.24845 * 18 17 16 50 50 H 0.97001 * 119.99920 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.00240 * 180.27896 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1571 -1.1985 -0.0005 5 6 1.4907 -2.3908 -0.3028 6 7 2.1486 -3.5288 -0.3079 7 6 3.4490 -3.5482 -0.0159 8 6 4.1877 -4.8285 -0.0171 9 8 5.3748 -4.8456 0.2443 10 7 3.5452 -5.9771 -0.3080 11 6 4.2773 -7.2461 -0.3086 12 6 3.3217 -8.3858 -0.6673 13 1 2.9693 -8.2555 -1.6905 14 6 4.0655 -9.7388 -0.5465 15 6 3.2611 -10.8186 -1.1387 16 6 1.9241 -11.0596 -0.4444 17 6 0.8923 -10.1115 -1.0039 18 6 0.8460 -8.8234 -0.1621 19 7 2.1932 -8.3703 0.2362 20 6 2.3819 -7.9171 1.5145 21 1 3.3289 -8.0751 2.0092 22 6 1.3561 -7.2547 2.1746 23 7 0.2917 -6.8603 1.5085 24 14 1.4863 -6.9230 4.0083 25 1 2.7716 -7.4636 4.5191 26 1 1.4329 -5.4591 4.2515 27 1 0.3576 -7.5833 4.7122 28 6 4.1136 -2.3602 0.2850 29 7 3.4534 -1.2166 0.2855 30 1 -0.3633 -1.0273 0.0314 31 1 -0.3633 0.5407 0.8739 32 1 -0.3634 0.4864 -0.9052 33 1 2.3790 1.5835 -1.0276 34 1 1.6083 2.0283 0.5139 35 1 3.1498 1.1385 0.5137 36 1 0.4361 -2.3759 -0.5353 37 1 2.5980 -5.9634 -0.5168 38 1 4.6981 -7.4231 0.6812 39 1 5.0816 -7.2011 -1.0428 40 1 5.0207 -9.6733 -1.0674 41 1 4.2457 -9.9588 0.5058 42 1 3.8406 -11.7411 -1.1033 43 1 3.0693 -10.5715 -2.1828 44 1 2.0339 -10.8871 0.6262 45 1 1.6048 -12.0875 -0.6168 46 1 -0.0866 -10.5906 -0.9856 47 1 1.1533 -9.8620 -2.0324 48 1 0.2550 -9.0079 0.7349 49 1 0.3660 -8.0371 -0.7446 50 1 -0.4253 -6.3977 1.9698 51 1 5.1682 -2.3752 0.5172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968858989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:35 Heat of formation + Delta-G solvation = 31.180153 kcal Electronic energy + Delta-G solvation = -32012.234557 eV Core-core repulsion = 27947.032601 eV Total energy + Delta-G solvation = -4065.201956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.22873 -40.48945 -39.46083 -37.90664 -36.01609 -35.28614 -35.01493 -33.19174 -32.45529 -31.88261 -29.36039 -28.75311 -27.57567 -26.74634 -25.22702 -25.15637 -24.08628 -23.11363 -21.61321 -21.07487 -20.74787 -19.22722 -18.81235 -18.35639 -17.70770 -17.20616 -16.73019 -16.65602 -16.26148 -16.12087 -15.91557 -15.75599 -15.41800 -15.19992 -15.14800 -14.86738 -14.65826 -14.23551 -14.13199 -13.65361 -13.41108 -13.35738 -13.25003 -13.12527 -12.93433 -12.88915 -12.85958 -12.71399 -12.47876 -12.34918 -12.33691 -12.00561 -11.53092 -11.37106 -11.30884 -11.25077 -11.16442 -11.12339 -10.90421 -10.35352 -10.10975 -9.78038 -8.75843 -8.42313 -7.74804 -5.22737 -0.41261 0.12154 1.35948 1.42360 1.47626 1.71786 1.82526 2.39873 2.53441 2.86440 3.18457 3.25716 3.38361 3.40985 3.65009 3.98165 4.05875 4.08336 4.13237 4.20046 4.30592 4.37970 4.46881 4.51239 4.54678 4.55609 4.65086 4.70397 4.74218 4.83338 4.89522 4.92383 5.04501 5.10533 5.12016 5.16476 5.29859 5.30019 5.41913 5.45978 5.59420 5.66720 5.68600 5.72342 5.79791 5.84194 5.92998 5.99004 6.35867 6.54015 6.66293 6.88967 7.32426 7.35430 8.04568 8.45600 9.27885 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.003412 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.510180 B = 8204.222023 C = 8837.292545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.597 5.597 3 C 0.089 3.911 4 C 0.367 3.633 5 C -0.002 4.002 6 N -0.384 5.384 7 C -0.068 4.068 8 C 0.570 3.430 9 O -0.588 6.588 10 N -0.672 5.672 11 C 0.130 3.870 12 C 0.173 3.827 13 H 0.053 0.947 14 C -0.127 4.127 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.132 4.132 18 C 0.192 3.808 19 N -0.586 5.586 20 C -0.237 4.237 21 H 0.044 0.956 22 C -0.015 4.015 23 N -0.906 5.906 24 Si 0.923 3.077 25 H -0.281 1.281 26 H -0.306 1.306 27 H -0.289 1.289 28 C 0.165 3.835 29 N -0.518 5.518 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.194 0.806 37 H 0.415 0.585 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.033 0.967 49 H 0.001 0.999 50 H 0.244 0.756 51 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 9.511 -8.109 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.308 5.308 3 C -0.053 4.053 4 C 0.125 3.875 5 C -0.177 4.177 6 N -0.099 5.099 7 C -0.207 4.207 8 C 0.355 3.645 9 O -0.470 6.470 10 N -0.319 5.319 11 C 0.006 3.994 12 C 0.066 3.934 13 H 0.071 0.929 14 C -0.168 4.168 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.171 4.171 18 C 0.068 3.932 19 N -0.309 5.309 20 C -0.368 4.368 21 H 0.061 0.939 22 C -0.213 4.213 23 N -0.551 5.551 24 Si 0.755 3.245 25 H -0.206 1.206 26 H -0.235 1.235 27 H -0.216 1.216 28 C 0.004 3.996 29 N -0.241 5.241 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.210 0.790 37 H 0.252 0.748 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.052 0.948 49 H 0.019 0.981 50 H 0.054 0.946 51 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.300 9.676 -7.906 12.499 hybrid contribution -0.570 0.306 1.555 1.685 sum -0.870 9.981 -6.351 11.863 Atomic orbital electron populations 1.22171 0.75586 1.04432 1.04056 1.46514 1.06905 1.02323 1.75100 1.21832 0.97746 0.83306 1.02464 1.19866 0.89862 0.88745 0.88981 1.23717 1.02644 0.86546 1.04752 1.68190 1.06858 1.28996 1.05842 1.21593 0.91862 0.95621 1.11578 1.17780 0.85873 0.83736 0.77089 1.90669 1.15812 1.87517 1.53023 1.45619 1.14310 1.05567 1.66364 1.21554 0.94382 0.83045 1.00436 1.20679 0.87536 0.92085 0.93143 0.92926 1.21279 0.98823 0.96084 1.00586 1.20275 0.95851 0.98151 0.99472 1.20906 0.95210 0.98028 0.99911 1.21939 0.99032 0.96814 0.99296 1.20726 0.85173 0.91446 0.95885 1.43688 1.05232 1.72976 1.08956 1.18883 0.98603 1.28537 0.90807 0.93872 1.25321 0.98530 0.98332 0.99112 1.70088 1.08931 1.42116 1.33940 0.85890 0.77129 0.76307 0.85164 1.20597 1.23454 1.21627 1.23500 1.01213 0.85902 0.89011 1.68148 1.07643 1.28372 1.19942 0.90142 0.89958 0.89245 0.91982 0.88618 0.91447 0.78956 0.74824 0.93699 0.91246 0.90813 0.93885 0.91848 0.92114 0.93882 0.91771 0.92025 0.92326 0.94799 0.98089 0.94645 0.79745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.55 127.77 1.35 2.31 16 2 N -0.60 -11.60 3.37 -753.50 -2.54 -14.14 16 3 C 0.09 1.32 10.62 127.77 1.36 2.68 16 4 C 0.37 10.24 7.29 133.34 0.97 11.21 16 5 C 0.00 -0.07 10.38 85.15 0.88 0.81 16 6 N -0.38 -14.78 9.69 -183.79 -1.78 -16.56 16 7 C -0.07 -2.68 6.74 41.74 0.28 -2.40 16 8 C 0.57 24.97 7.80 86.78 0.68 25.65 16 9 O -0.59 -27.25 16.33 -3.91 -0.06 -27.31 16 10 N -0.67 -29.27 4.71 -465.99 -2.19 -31.46 16 11 C 0.13 5.26 4.52 86.38 0.39 5.65 16 12 C 0.17 6.61 2.19 45.99 0.10 6.71 16 13 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 14 C -0.13 -4.13 5.06 29.40 0.15 -3.98 16 15 C -0.10 -2.86 5.16 28.62 0.15 -2.72 16 16 C -0.10 -3.29 5.51 29.76 0.16 -3.12 16 17 C -0.13 -4.51 5.71 30.22 0.17 -4.34 16 18 C 0.19 8.54 4.65 86.49 0.40 8.94 16 19 N -0.59 -26.35 1.75 -674.26 -1.18 -27.53 16 20 C -0.24 -12.24 7.47 84.03 0.63 -11.61 16 21 H 0.04 2.37 6.92 -2.91 -0.02 2.35 16 22 C -0.02 -0.82 4.94 84.86 0.42 -0.40 16 23 N -0.91 -49.67 11.21 21.65 0.24 -49.43 16 24 Si 0.92 45.90 29.57 68.60 2.03 47.93 16 25 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 28 C 0.16 5.68 10.76 84.94 0.91 6.59 16 29 N -0.52 -16.09 9.24 -191.74 -1.77 -17.86 16 30 H 0.08 1.07 5.54 -2.38 -0.01 1.06 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.89 8.07 -2.39 -0.02 0.87 16 35 H 0.07 1.26 7.23 -2.39 -0.02 1.24 16 36 H 0.19 4.62 6.04 -2.91 -0.02 4.60 16 37 H 0.41 19.33 7.42 -92.71 -0.69 18.64 16 38 H 0.04 2.02 6.94 -2.38 -0.02 2.01 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.61 7.35 -2.39 -0.02 1.59 16 44 H 0.04 1.65 7.48 -2.39 -0.02 1.63 16 45 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.06 1.85 7.31 -2.39 -0.02 1.83 16 48 H 0.03 1.71 6.68 -2.39 -0.02 1.70 16 49 H 0.00 0.05 7.97 -2.39 -0.02 0.03 16 50 H 0.24 13.33 8.31 -92.71 -0.77 12.56 16 51 H 0.19 5.88 7.63 -2.91 -0.02 5.85 16 Total: -1.00 -66.77 398.74 2.00 -64.77 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.25 Total: 29.60 kcal Atomic # 6 Polarization: 32.99 SS G_CDS: 9.01 Total: 41.99 kcal Atomic # 7 Polarization: -147.75 SS G_CDS: -9.23 Total: -156.98 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -66.77 2.00 -64.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968858989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.953 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds