Wall clock time and date at job start Wed Apr 1 2020 04:39:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46900 * 111.00243 * 2 1
4 4 C 1.46905 * 110.99675 * 123.95176 * 2 1 3
5 5 C 1.52997 * 109.46941 * 169.99551 * 4 2 1
6 6 N 1.46502 * 109.47002 * 179.97438 * 5 4 2
7 7 C 1.35033 * 124.88144 * 125.00127 * 6 5 4
8 8 C 1.35366 * 107.22825 * 179.97438 * 7 6 5
9 9 C 1.41493 * 105.50215 * 359.97438 * 8 7 6
10 10 C 1.47715 * 126.51668 * 179.97438 * 9 8 7
11 11 O 1.21564 * 119.99864 * 0.02562 * 10 9 8
12 12 N 1.34777 * 119.99796 * 180.02562 * 10 9 8
13 13 C 1.46506 * 119.99772 * 180.02562 * 12 10 9
14 14 C 1.53004 * 109.46794 * 180.02562 * 13 12 10
15 15 H 1.08996 * 115.50111 * 29.61255 * 14 13 12
16 16 C 1.53005 * 117.43751 * 244.23808 * 14 13 12
17 17 H 1.09002 * 119.54133 * 4.11706 * 16 14 13
18 18 C 1.54388 * 118.11953 * 160.80919 * 16 14 13
19 19 N 1.48147 * 104.61527 * 87.19121 * 18 16 14
20 20 C 1.36944 * 127.83511 * 140.41382 * 19 18 16
21 21 H 1.07995 * 120.00220 * 359.97438 * 20 19 18
22 22 C 1.38816 * 119.99397 * 180.02562 * 20 19 18
23 23 N 1.31614 * 120.00462 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 119.99395 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47349 * 59.99662 * 24 22 20
26 26 H 1.48501 * 109.46924 * 179.97438 * 24 22 20
27 27 H 1.48498 * 109.46972 * 299.99435 * 24 22 20
28 28 C 1.51827 * 104.55132 * 320.13659 * 19 18 16
29 29 C 1.53001 * 117.43931 * 175.00103 * 14 13 12
30 30 H 1.09002 * 119.53987 * 355.87593 * 29 14 13
31 31 N 1.28462 * 124.88929 * 305.25220 * 6 5 4
32 32 H 1.09007 * 109.47020 * 296.05050 * 1 2 3
33 33 H 1.09007 * 109.46861 * 56.04275 * 1 2 3
34 34 H 1.08993 * 109.47380 * 176.04442 * 1 2 3
35 35 H 1.09001 * 109.46948 * 183.95146 * 3 2 1
36 36 H 1.08997 * 109.47077 * 303.95044 * 3 2 1
37 37 H 1.08998 * 109.46995 * 63.95173 * 3 2 1
38 38 H 1.09001 * 109.46675 * 50.00240 * 4 2 1
39 39 H 1.08992 * 109.47406 * 290.00138 * 4 2 1
40 40 H 1.08998 * 109.47188 * 60.00396 * 5 4 2
41 41 H 1.09002 * 109.47626 * 300.00475 * 5 4 2
42 42 H 1.08005 * 126.38990 * 359.94350 * 7 6 5
43 43 H 1.07999 * 127.24641 * 179.97438 * 8 7 6
44 44 H 0.97003 * 120.00429 * 0.02562 * 12 10 9
45 45 H 1.08993 * 109.47196 * 60.00048 * 13 12 10
46 46 H 1.09001 * 109.46776 * 299.99514 * 13 12 10
47 47 H 1.09005 * 110.40063 * 205.97149 * 18 16 14
48 48 H 1.08991 * 110.41105 * 328.40677 * 18 16 14
49 49 H 0.96998 * 120.00080 * 180.02562 * 23 22 20
50 50 H 1.08997 * 110.21952 * 281.99947 * 28 19 18
51 51 H 1.09001 * 112.25708 * 158.41268 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9954 -0.7660 1.1377
5 6 3.5043 -0.9555 0.9704
6 7 4.0294 -1.7188 2.1053
7 6 4.7431 -2.8606 2.0039
8 6 5.0440 -3.2584 3.2624
9 6 4.4680 -2.2864 4.1141
10 6 4.5175 -2.2711 5.5903
11 8 5.0977 -3.1564 6.1882
12 7 3.9194 -1.2757 6.2743
13 6 3.9690 -1.2602 7.7385
14 6 3.2184 -0.0337 8.2612
15 1 2.3979 0.3165 7.6349
16 6 4.0305 1.0218 9.0145
17 1 5.1115 0.9095 9.0981
18 6 3.4316 2.4380 9.1538
19 7 2.5977 2.3726 10.3765
20 6 2.4552 3.3271 11.3481
21 1 2.9902 4.2619 11.2694
22 6 1.6237 3.0926 12.4346
23 7 0.9720 1.9531 12.5308
24 14 1.4287 4.3949 13.7596
25 1 0.8873 5.6387 13.1553
26 1 0.4926 3.9037 14.8025
27 1 2.7507 4.6778 14.3740
28 6 1.9288 1.0113 10.3097
29 6 3.0556 0.1003 9.7766
30 1 3.4104 -0.6984 10.4280
31 7 3.8731 -1.4008 3.3401
32 1 -0.3633 0.4513 0.9233
33 1 -0.3633 0.5741 -0.8525
34 1 -0.3634 -1.0251 -0.0709
35 1 3.0828 1.3431 -0.0708
36 1 1.5899 1.9163 -0.8524
37 1 1.7044 1.8723 0.9233
38 1 1.5088 -1.7406 1.1756
39 1 1.7974 -0.2248 2.0628
40 1 3.9909 0.0191 0.9324
41 1 3.7023 -1.4967 0.0452
42 1 5.0217 -3.3631 1.0894
43 1 5.6055 -4.1334 3.5546
44 1 3.4561 -0.5695 5.7973
45 1 5.0076 -1.2180 8.0664
46 1 3.5016 -2.1648 8.1274
47 1 4.2249 3.1759 9.2737
48 1 2.8164 2.6775 8.2866
49 1 0.3908 1.7895 13.2899
50 1 1.0953 1.0352 9.6078
51 1 1.5932 0.6677 11.2882
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000978180870.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:03
Heat of formation + Delta-G solvation = 121.065423 kcal
Electronic energy + Delta-G solvation = -29482.414227 eV
Core-core repulsion = 25421.109989 eV
Total energy + Delta-G solvation = -4061.304238 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.93004 -39.49745 -38.49332 -38.18546 -34.85330 -34.03941 -33.22396 -31.12301
-30.67148 -29.71803 -28.14668 -27.50471 -26.97521 -25.61683 -24.65842 -22.93331
-21.79167 -21.49085 -21.04984 -20.37962 -19.55914 -19.10012 -18.13166 -17.06833
-16.83223 -16.56340 -15.98529 -15.84355 -15.53162 -15.10499 -14.87124 -14.74528
-14.37857 -14.24326 -13.88349 -13.65710 -13.60072 -13.19646 -13.02759 -12.94903
-12.68264 -12.57315 -12.53796 -12.28988 -12.14062 -11.78878 -11.71339 -11.22887
-11.12754 -10.92125 -10.81449 -10.61199 -10.28988 -10.18269 -10.13801 -9.65249
-9.55202 -9.35167 -9.24668 -9.08748 -9.02282 -8.81571 -8.75687 -6.90231
-5.64405 -3.08638 1.39541 1.90263 2.02681 3.15971 3.37785 3.40763
3.41881 3.44612 3.46158 3.97782 4.16976 4.22295 4.45910 4.48253
4.49316 4.61535 4.65529 4.86180 4.92061 4.96819 5.00134 5.10446
5.16043 5.30388 5.34351 5.37680 5.38970 5.41199 5.44119 5.49385
5.53106 5.59401 5.81897 5.94930 5.98747 6.00839 6.13998 6.27758
6.32306 6.32874 6.42605 6.48708 6.60645 6.68029 6.77607 6.96326
7.35008 7.43665 7.55398 7.72571 7.82356 8.21946 8.30486 9.14191
9.78391 10.50181 11.38778
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.011182 B = 0.001977 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2503.450974 B =14162.716035 C =16062.420682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.545 5.545
3 C 0.015 3.985
4 C 0.040 3.960
5 C 0.124 3.876
6 N -0.282 5.282
7 C -0.017 4.017
8 C -0.179 4.179
9 C -0.013 4.013
10 C 0.601 3.399
11 O -0.537 6.537
12 N -0.710 5.710
13 C 0.154 3.846
14 C -0.154 4.154
15 H 0.101 0.899
16 C -0.172 4.172
17 H 0.102 0.898
18 C 0.159 3.841
19 N -0.603 5.603
20 C -0.215 4.215
21 H 0.078 0.922
22 C -0.015 4.015
23 N -0.923 5.923
24 Si 0.918 3.082
25 H -0.286 1.286
26 H -0.290 1.290
27 H -0.285 1.285
28 C 0.154 3.846
29 C -0.153 4.153
30 H 0.103 0.897
31 N -0.260 5.260
32 H 0.031 0.969
33 H 0.073 0.927
34 H 0.070 0.930
35 H 0.070 0.930
36 H 0.073 0.927
37 H 0.033 0.967
38 H 0.083 0.917
39 H 0.057 0.943
40 H 0.094 0.906
41 H 0.112 0.888
42 H 0.182 0.818
43 H 0.163 0.837
44 H 0.407 0.593
45 H 0.069 0.931
46 H 0.073 0.927
47 H 0.049 0.951
48 H 0.023 0.977
49 H 0.254 0.746
50 H 0.014 0.986
51 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.608 -8.096 -28.926 30.254
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.270 5.270
3 C -0.133 4.133
4 C -0.089 4.089
5 C 0.004 3.996
6 N -0.071 5.071
7 C -0.160 4.160
8 C -0.207 4.207
9 C -0.173 4.173
10 C 0.385 3.615
11 O -0.412 6.412
12 N -0.361 5.361
13 C 0.031 3.969
14 C -0.173 4.173
15 H 0.119 0.881
16 C -0.192 4.192
17 H 0.120 0.880
18 C 0.032 3.968
19 N -0.327 5.327
20 C -0.343 4.343
21 H 0.096 0.904
22 C -0.210 4.210
23 N -0.572 5.572
24 Si 0.748 3.252
25 H -0.213 1.213
26 H -0.215 1.215
27 H -0.212 1.212
28 C 0.030 3.970
29 C -0.174 4.174
30 H 0.121 0.879
31 N -0.096 5.096
32 H 0.050 0.950
33 H 0.092 0.908
34 H 0.089 0.911
35 H 0.089 0.911
36 H 0.091 0.909
37 H 0.052 0.948
38 H 0.101 0.899
39 H 0.075 0.925
40 H 0.112 0.888
41 H 0.130 0.870
42 H 0.199 0.801
43 H 0.180 0.820
44 H 0.242 0.758
45 H 0.088 0.912
46 H 0.091 0.909
47 H 0.067 0.933
48 H 0.040 0.960
49 H 0.065 0.935
50 H 0.032 0.968
51 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 3.380 -7.790 -28.707 29.937
hybrid contribution -0.052 0.637 0.927 1.126
sum 3.328 -7.153 -27.780 28.879
Atomic orbital electron populations
1.22401 0.86178 1.02669 1.01153 1.61944 1.08821 1.14288 1.41922
1.22535 1.00890 0.88548 1.01372 1.22349 0.93308 0.99946 0.93272
1.21983 0.95063 0.97356 0.85233 1.45468 1.38161 1.18671 1.04772
1.22884 1.01677 0.90859 1.00562 1.21790 1.05963 1.02250 0.90664
1.21996 1.04588 0.96352 0.94398 1.16885 0.78754 0.81859 0.83967
1.90794 1.44046 1.37389 1.68980 1.45903 1.55503 1.26903 1.07797
1.20931 1.00368 0.97533 0.78030 1.22565 1.01586 0.96830 0.96315
0.88113 1.23998 0.96568 0.93703 1.04883 0.87952 1.21091 0.93395
0.92236 0.90054 1.46156 1.50152 1.15554 1.20830 1.19068 1.22052
0.94961 0.98229 0.90391 1.24756 0.99622 0.97751 0.98834 1.69480
1.33306 1.23232 1.31204 0.86100 0.77469 0.80410 0.81216 1.21276
1.21536 1.21187 1.22566 0.89273 0.82358 1.02768 1.24182 1.02141
1.00851 0.90210 0.87925 1.73479 1.21091 1.24974 0.90087 0.95010
0.90842 0.91105 0.91122 0.90865 0.94808 0.89902 0.92460 0.88769
0.86974 0.80051 0.81975 0.75815 0.91231 0.90906 0.93257 0.95981
0.93545 0.96754 0.84732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 9.57 60.06 0.57 0.70 16
2 N -0.55 -3.12 5.02 -251.26 -1.26 -4.38 16
3 C 0.01 0.07 9.32 60.06 0.56 0.63 16
4 C 0.04 0.25 5.06 -3.82 -0.02 0.23 16
5 C 0.12 0.66 6.32 -4.04 -0.03 0.64 16
6 N -0.28 -2.35 3.41 -61.33 -0.21 -2.56 16
7 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16
8 C -0.18 -1.85 10.81 -39.37 -0.43 -2.27 16
9 C -0.01 -0.16 7.13 -82.77 -0.59 -0.75 16
10 C 0.60 8.92 7.82 -12.39 -0.10 8.82 16
11 O -0.54 -9.50 16.93 5.31 0.09 -9.41 16
12 N -0.71 -9.73 5.55 -61.29 -0.34 -10.07 16
13 C 0.15 2.27 5.95 -4.04 -0.02 2.25 16
14 C -0.15 -2.49 5.38 -90.61 -0.49 -2.98 16
15 H 0.10 1.62 8.04 -51.93 -0.42 1.21 16
16 C -0.17 -3.16 6.74 -89.22 -0.60 -3.76 16
17 H 0.10 1.77 8.12 -51.93 -0.42 1.35 16
18 C 0.16 3.37 7.05 -2.41 -0.02 3.36 16
19 N -0.60 -15.65 3.46 -165.70 -0.57 -16.23 16
20 C -0.21 -6.04 10.42 -15.05 -0.16 -6.19 16
21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16
22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16
23 N -0.92 -26.90 10.12 55.49 0.56 -26.34 16
24 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 16
25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
28 C 0.15 3.75 6.43 -0.29 0.00 3.75 16
29 C -0.15 -3.02 6.76 -89.22 -0.60 -3.62 16
30 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16
31 N -0.26 -2.92 11.35 33.42 0.38 -2.54 16
32 H 0.03 0.18 8.14 -51.92 -0.42 -0.24 16
33 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16
34 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16
35 H 0.07 0.29 6.47 -51.93 -0.34 -0.05 16
36 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16
37 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16
38 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16
39 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16
40 H 0.09 0.46 6.55 -51.93 -0.34 0.12 16
41 H 0.11 0.35 8.04 -51.93 -0.42 -0.07 16
42 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16
43 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16
44 H 0.41 5.05 8.13 -40.82 -0.33 4.72 16
45 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16
46 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
50 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
51 H 0.14 3.68 5.34 -51.93 -0.28 3.40 16
LS Contribution 416.75 15.07 6.28 6.28
Total: -1.00 -33.59 416.75 -10.71 -44.30
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -8.41 Total: 3.88 kcal
Atomic # 6 Polarization: 2.15 SS G_CDS: -2.21 Total: -0.05 kcal
Atomic # 7 Polarization: -60.67 SS G_CDS: -1.44 Total: -62.11 kcal
Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 6.28 Total: 6.28 kcal
Total: -33.59 -10.71 -44.30 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000978180870.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 165.362 kcal
(2) G-P(sol) polarization free energy of solvation -33.587 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) 121.065 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds