Wall clock time and date at job start Wed Apr 1 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00243 * 2 1 4 4 C 1.46905 * 110.99675 * 123.95176 * 2 1 3 5 5 C 1.52997 * 109.46941 * 169.99551 * 4 2 1 6 6 N 1.46502 * 109.47002 * 179.97438 * 5 4 2 7 7 C 1.35033 * 124.88144 * 125.00127 * 6 5 4 8 8 C 1.35366 * 107.22825 * 179.97438 * 7 6 5 9 9 C 1.41493 * 105.50215 * 359.97438 * 8 7 6 10 10 C 1.47715 * 126.51668 * 179.97438 * 9 8 7 11 11 O 1.21564 * 119.99864 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99772 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46794 * 180.02562 * 13 12 10 15 15 H 1.08996 * 115.50111 * 29.61255 * 14 13 12 16 16 C 1.53005 * 117.43751 * 244.23808 * 14 13 12 17 17 H 1.09002 * 119.54133 * 4.11706 * 16 14 13 18 18 C 1.54388 * 118.11953 * 160.80919 * 16 14 13 19 19 N 1.48147 * 104.61527 * 87.19121 * 18 16 14 20 20 C 1.36944 * 127.83511 * 140.41382 * 19 18 16 21 21 H 1.07995 * 120.00220 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99397 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00462 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99395 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47349 * 59.99662 * 24 22 20 26 26 H 1.48501 * 109.46924 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46972 * 299.99435 * 24 22 20 28 28 C 1.51827 * 104.55132 * 320.13659 * 19 18 16 29 29 C 1.53001 * 117.43931 * 175.00103 * 14 13 12 30 30 H 1.09002 * 119.53987 * 355.87593 * 29 14 13 31 31 N 1.28462 * 124.88929 * 305.25220 * 6 5 4 32 32 H 1.09007 * 109.47020 * 296.05050 * 1 2 3 33 33 H 1.09007 * 109.46861 * 56.04275 * 1 2 3 34 34 H 1.08993 * 109.47380 * 176.04442 * 1 2 3 35 35 H 1.09001 * 109.46948 * 183.95146 * 3 2 1 36 36 H 1.08997 * 109.47077 * 303.95044 * 3 2 1 37 37 H 1.08998 * 109.46995 * 63.95173 * 3 2 1 38 38 H 1.09001 * 109.46675 * 50.00240 * 4 2 1 39 39 H 1.08992 * 109.47406 * 290.00138 * 4 2 1 40 40 H 1.08998 * 109.47188 * 60.00396 * 5 4 2 41 41 H 1.09002 * 109.47626 * 300.00475 * 5 4 2 42 42 H 1.08005 * 126.38990 * 359.94350 * 7 6 5 43 43 H 1.07999 * 127.24641 * 179.97438 * 8 7 6 44 44 H 0.97003 * 120.00429 * 0.02562 * 12 10 9 45 45 H 1.08993 * 109.47196 * 60.00048 * 13 12 10 46 46 H 1.09001 * 109.46776 * 299.99514 * 13 12 10 47 47 H 1.09005 * 110.40063 * 205.97149 * 18 16 14 48 48 H 1.08991 * 110.41105 * 328.40677 * 18 16 14 49 49 H 0.96998 * 120.00080 * 180.02562 * 23 22 20 50 50 H 1.08997 * 110.21952 * 281.99947 * 28 19 18 51 51 H 1.09001 * 112.25708 * 158.41268 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5043 -0.9555 0.9704 6 7 4.0294 -1.7188 2.1053 7 6 4.7431 -2.8606 2.0039 8 6 5.0440 -3.2584 3.2624 9 6 4.4680 -2.2864 4.1141 10 6 4.5175 -2.2711 5.5903 11 8 5.0977 -3.1564 6.1882 12 7 3.9194 -1.2757 6.2743 13 6 3.9690 -1.2602 7.7385 14 6 3.2184 -0.0337 8.2612 15 1 2.3979 0.3165 7.6349 16 6 4.0305 1.0218 9.0145 17 1 5.1115 0.9095 9.0981 18 6 3.4316 2.4380 9.1538 19 7 2.5977 2.3726 10.3765 20 6 2.4552 3.3271 11.3481 21 1 2.9902 4.2619 11.2694 22 6 1.6237 3.0926 12.4346 23 7 0.9720 1.9531 12.5308 24 14 1.4287 4.3949 13.7596 25 1 0.8873 5.6387 13.1553 26 1 0.4926 3.9037 14.8025 27 1 2.7507 4.6778 14.3740 28 6 1.9288 1.0113 10.3097 29 6 3.0556 0.1003 9.7766 30 1 3.4104 -0.6984 10.4280 31 7 3.8731 -1.4008 3.3401 32 1 -0.3633 0.4513 0.9233 33 1 -0.3633 0.5741 -0.8525 34 1 -0.3634 -1.0251 -0.0709 35 1 3.0828 1.3431 -0.0708 36 1 1.5899 1.9163 -0.8524 37 1 1.7044 1.8723 0.9233 38 1 1.5088 -1.7406 1.1756 39 1 1.7974 -0.2248 2.0628 40 1 3.9909 0.0191 0.9324 41 1 3.7023 -1.4967 0.0452 42 1 5.0217 -3.3631 1.0894 43 1 5.6055 -4.1334 3.5546 44 1 3.4561 -0.5695 5.7973 45 1 5.0076 -1.2180 8.0664 46 1 3.5016 -2.1648 8.1274 47 1 4.2249 3.1759 9.2737 48 1 2.8164 2.6775 8.2866 49 1 0.3908 1.7895 13.2899 50 1 1.0953 1.0352 9.6078 51 1 1.5932 0.6677 11.2882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978180870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:03 Heat of formation + Delta-G solvation = 121.065423 kcal Electronic energy + Delta-G solvation = -29482.414227 eV Core-core repulsion = 25421.109989 eV Total energy + Delta-G solvation = -4061.304238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.93004 -39.49745 -38.49332 -38.18546 -34.85330 -34.03941 -33.22396 -31.12301 -30.67148 -29.71803 -28.14668 -27.50471 -26.97521 -25.61683 -24.65842 -22.93331 -21.79167 -21.49085 -21.04984 -20.37962 -19.55914 -19.10012 -18.13166 -17.06833 -16.83223 -16.56340 -15.98529 -15.84355 -15.53162 -15.10499 -14.87124 -14.74528 -14.37857 -14.24326 -13.88349 -13.65710 -13.60072 -13.19646 -13.02759 -12.94903 -12.68264 -12.57315 -12.53796 -12.28988 -12.14062 -11.78878 -11.71339 -11.22887 -11.12754 -10.92125 -10.81449 -10.61199 -10.28988 -10.18269 -10.13801 -9.65249 -9.55202 -9.35167 -9.24668 -9.08748 -9.02282 -8.81571 -8.75687 -6.90231 -5.64405 -3.08638 1.39541 1.90263 2.02681 3.15971 3.37785 3.40763 3.41881 3.44612 3.46158 3.97782 4.16976 4.22295 4.45910 4.48253 4.49316 4.61535 4.65529 4.86180 4.92061 4.96819 5.00134 5.10446 5.16043 5.30388 5.34351 5.37680 5.38970 5.41199 5.44119 5.49385 5.53106 5.59401 5.81897 5.94930 5.98747 6.00839 6.13998 6.27758 6.32306 6.32874 6.42605 6.48708 6.60645 6.68029 6.77607 6.96326 7.35008 7.43665 7.55398 7.72571 7.82356 8.21946 8.30486 9.14191 9.78391 10.50181 11.38778 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.001977 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.450974 B =14162.716035 C =16062.420682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.015 3.985 4 C 0.040 3.960 5 C 0.124 3.876 6 N -0.282 5.282 7 C -0.017 4.017 8 C -0.179 4.179 9 C -0.013 4.013 10 C 0.601 3.399 11 O -0.537 6.537 12 N -0.710 5.710 13 C 0.154 3.846 14 C -0.154 4.154 15 H 0.101 0.899 16 C -0.172 4.172 17 H 0.102 0.898 18 C 0.159 3.841 19 N -0.603 5.603 20 C -0.215 4.215 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.918 3.082 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.154 3.846 29 C -0.153 4.153 30 H 0.103 0.897 31 N -0.260 5.260 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.407 0.593 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.023 0.977 49 H 0.254 0.746 50 H 0.014 0.986 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -8.096 -28.926 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.133 4.133 4 C -0.089 4.089 5 C 0.004 3.996 6 N -0.071 5.071 7 C -0.160 4.160 8 C -0.207 4.207 9 C -0.173 4.173 10 C 0.385 3.615 11 O -0.412 6.412 12 N -0.361 5.361 13 C 0.031 3.969 14 C -0.173 4.173 15 H 0.119 0.881 16 C -0.192 4.192 17 H 0.120 0.880 18 C 0.032 3.968 19 N -0.327 5.327 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.210 4.210 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.030 3.970 29 C -0.174 4.174 30 H 0.121 0.879 31 N -0.096 5.096 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.199 0.801 43 H 0.180 0.820 44 H 0.242 0.758 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.040 0.960 49 H 0.065 0.935 50 H 0.032 0.968 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.380 -7.790 -28.707 29.937 hybrid contribution -0.052 0.637 0.927 1.126 sum 3.328 -7.153 -27.780 28.879 Atomic orbital electron populations 1.22401 0.86178 1.02669 1.01153 1.61944 1.08821 1.14288 1.41922 1.22535 1.00890 0.88548 1.01372 1.22349 0.93308 0.99946 0.93272 1.21983 0.95063 0.97356 0.85233 1.45468 1.38161 1.18671 1.04772 1.22884 1.01677 0.90859 1.00562 1.21790 1.05963 1.02250 0.90664 1.21996 1.04588 0.96352 0.94398 1.16885 0.78754 0.81859 0.83967 1.90794 1.44046 1.37389 1.68980 1.45903 1.55503 1.26903 1.07797 1.20931 1.00368 0.97533 0.78030 1.22565 1.01586 0.96830 0.96315 0.88113 1.23998 0.96568 0.93703 1.04883 0.87952 1.21091 0.93395 0.92236 0.90054 1.46156 1.50152 1.15554 1.20830 1.19068 1.22052 0.94961 0.98229 0.90391 1.24756 0.99622 0.97751 0.98834 1.69480 1.33306 1.23232 1.31204 0.86100 0.77469 0.80410 0.81216 1.21276 1.21536 1.21187 1.22566 0.89273 0.82358 1.02768 1.24182 1.02141 1.00851 0.90210 0.87925 1.73479 1.21091 1.24974 0.90087 0.95010 0.90842 0.91105 0.91122 0.90865 0.94808 0.89902 0.92460 0.88769 0.86974 0.80051 0.81975 0.75815 0.91231 0.90906 0.93257 0.95981 0.93545 0.96754 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.57 60.06 0.57 0.70 16 2 N -0.55 -3.12 5.02 -251.26 -1.26 -4.38 16 3 C 0.01 0.07 9.32 60.06 0.56 0.63 16 4 C 0.04 0.25 5.06 -3.82 -0.02 0.23 16 5 C 0.12 0.66 6.32 -4.04 -0.03 0.64 16 6 N -0.28 -2.35 3.41 -61.33 -0.21 -2.56 16 7 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 8 C -0.18 -1.85 10.81 -39.37 -0.43 -2.27 16 9 C -0.01 -0.16 7.13 -82.77 -0.59 -0.75 16 10 C 0.60 8.92 7.82 -12.39 -0.10 8.82 16 11 O -0.54 -9.50 16.93 5.31 0.09 -9.41 16 12 N -0.71 -9.73 5.55 -61.29 -0.34 -10.07 16 13 C 0.15 2.27 5.95 -4.04 -0.02 2.25 16 14 C -0.15 -2.49 5.38 -90.61 -0.49 -2.98 16 15 H 0.10 1.62 8.04 -51.93 -0.42 1.21 16 16 C -0.17 -3.16 6.74 -89.22 -0.60 -3.76 16 17 H 0.10 1.77 8.12 -51.93 -0.42 1.35 16 18 C 0.16 3.37 7.05 -2.41 -0.02 3.36 16 19 N -0.60 -15.65 3.46 -165.70 -0.57 -16.23 16 20 C -0.21 -6.04 10.42 -15.05 -0.16 -6.19 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.92 -26.90 10.12 55.49 0.56 -26.34 16 24 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C 0.15 3.75 6.43 -0.29 0.00 3.75 16 29 C -0.15 -3.02 6.76 -89.22 -0.60 -3.62 16 30 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 31 N -0.26 -2.92 11.35 33.42 0.38 -2.54 16 32 H 0.03 0.18 8.14 -51.92 -0.42 -0.24 16 33 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.07 0.29 6.47 -51.93 -0.34 -0.05 16 36 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 37 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 39 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 40 H 0.09 0.46 6.55 -51.93 -0.34 0.12 16 41 H 0.11 0.35 8.04 -51.93 -0.42 -0.07 16 42 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.41 5.05 8.13 -40.82 -0.33 4.72 16 45 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 50 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.14 3.68 5.34 -51.93 -0.28 3.40 16 LS Contribution 416.75 15.07 6.28 6.28 Total: -1.00 -33.59 416.75 -10.71 -44.30 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.41 Total: 3.88 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.21 Total: -0.05 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.44 Total: -62.11 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.59 -10.71 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978180870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.362 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds