Wall clock time and date at job start Wed Apr 1 2020 04:39:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46900 * 111.00243 * 2 1
4 4 C 1.46905 * 110.99675 * 123.95176 * 2 1 3
5 5 C 1.52997 * 109.46941 * 169.99551 * 4 2 1
6 6 N 1.46502 * 109.47002 * 179.97438 * 5 4 2
7 7 C 1.35033 * 124.88144 * 125.00127 * 6 5 4
8 8 C 1.35366 * 107.22825 * 179.97438 * 7 6 5
9 9 C 1.41493 * 105.50215 * 359.97438 * 8 7 6
10 10 C 1.47715 * 126.51668 * 179.97438 * 9 8 7
11 11 O 1.21564 * 119.99864 * 0.02562 * 10 9 8
12 12 N 1.34777 * 119.99796 * 180.02562 * 10 9 8
13 13 C 1.46506 * 119.99772 * 180.02562 * 12 10 9
14 14 C 1.53004 * 109.46794 * 180.02562 * 13 12 10
15 15 H 1.08996 * 115.50111 * 29.61255 * 14 13 12
16 16 C 1.53005 * 117.43751 * 244.23808 * 14 13 12
17 17 H 1.09002 * 119.54133 * 4.11706 * 16 14 13
18 18 C 1.54388 * 118.11953 * 160.80919 * 16 14 13
19 19 N 1.48147 * 104.61527 * 87.19121 * 18 16 14
20 20 C 1.36944 * 127.83511 * 140.41382 * 19 18 16
21 21 H 1.07995 * 120.00220 * 359.97438 * 20 19 18
22 22 C 1.38816 * 119.99397 * 180.02562 * 20 19 18
23 23 N 1.31614 * 120.00462 * 359.97438 * 22 20 19
24 24 Si 1.86806 * 119.99395 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47349 * 59.99662 * 24 22 20
26 26 H 1.48501 * 109.46924 * 179.97438 * 24 22 20
27 27 H 1.48498 * 109.46972 * 299.99435 * 24 22 20
28 28 C 1.51827 * 104.55132 * 320.13659 * 19 18 16
29 29 C 1.53001 * 117.43931 * 175.00103 * 14 13 12
30 30 H 1.09002 * 119.53987 * 355.87593 * 29 14 13
31 31 N 1.28462 * 124.88929 * 305.25220 * 6 5 4
32 32 H 1.09007 * 109.47020 * 296.05050 * 1 2 3
33 33 H 1.09007 * 109.46861 * 56.04275 * 1 2 3
34 34 H 1.08993 * 109.47380 * 176.04442 * 1 2 3
35 35 H 1.09001 * 109.46948 * 183.95146 * 3 2 1
36 36 H 1.08997 * 109.47077 * 303.95044 * 3 2 1
37 37 H 1.08998 * 109.46995 * 63.95173 * 3 2 1
38 38 H 1.09001 * 109.46675 * 50.00240 * 4 2 1
39 39 H 1.08992 * 109.47406 * 290.00138 * 4 2 1
40 40 H 1.08998 * 109.47188 * 60.00396 * 5 4 2
41 41 H 1.09002 * 109.47626 * 300.00475 * 5 4 2
42 42 H 1.08005 * 126.38990 * 359.94350 * 7 6 5
43 43 H 1.07999 * 127.24641 * 179.97438 * 8 7 6
44 44 H 0.97003 * 120.00429 * 0.02562 * 12 10 9
45 45 H 1.08993 * 109.47196 * 60.00048 * 13 12 10
46 46 H 1.09001 * 109.46776 * 299.99514 * 13 12 10
47 47 H 1.09005 * 110.40063 * 205.97149 * 18 16 14
48 48 H 1.08991 * 110.41105 * 328.40677 * 18 16 14
49 49 H 0.96998 * 120.00080 * 180.02562 * 23 22 20
50 50 H 1.08997 * 110.21952 * 281.99947 * 28 19 18
51 51 H 1.09001 * 112.25708 * 158.41268 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9954 -0.7660 1.1377
5 6 3.5043 -0.9555 0.9704
6 7 4.0294 -1.7188 2.1053
7 6 4.7431 -2.8606 2.0039
8 6 5.0440 -3.2584 3.2624
9 6 4.4680 -2.2864 4.1141
10 6 4.5175 -2.2711 5.5903
11 8 5.0977 -3.1564 6.1882
12 7 3.9194 -1.2757 6.2743
13 6 3.9690 -1.2602 7.7385
14 6 3.2184 -0.0337 8.2612
15 1 2.3979 0.3165 7.6349
16 6 4.0305 1.0218 9.0145
17 1 5.1115 0.9095 9.0981
18 6 3.4316 2.4380 9.1538
19 7 2.5977 2.3726 10.3765
20 6 2.4552 3.3271 11.3481
21 1 2.9902 4.2619 11.2694
22 6 1.6237 3.0926 12.4346
23 7 0.9720 1.9531 12.5308
24 14 1.4287 4.3949 13.7596
25 1 0.8873 5.6387 13.1553
26 1 0.4926 3.9037 14.8025
27 1 2.7507 4.6778 14.3740
28 6 1.9288 1.0113 10.3097
29 6 3.0556 0.1003 9.7766
30 1 3.4104 -0.6984 10.4280
31 7 3.8731 -1.4008 3.3401
32 1 -0.3633 0.4513 0.9233
33 1 -0.3633 0.5741 -0.8525
34 1 -0.3634 -1.0251 -0.0709
35 1 3.0828 1.3431 -0.0708
36 1 1.5899 1.9163 -0.8524
37 1 1.7044 1.8723 0.9233
38 1 1.5088 -1.7406 1.1756
39 1 1.7974 -0.2248 2.0628
40 1 3.9909 0.0191 0.9324
41 1 3.7023 -1.4967 0.0452
42 1 5.0217 -3.3631 1.0894
43 1 5.6055 -4.1334 3.5546
44 1 3.4561 -0.5695 5.7973
45 1 5.0076 -1.2180 8.0664
46 1 3.5016 -2.1648 8.1274
47 1 4.2249 3.1759 9.2737
48 1 2.8164 2.6775 8.2866
49 1 0.3908 1.7895 13.2899
50 1 1.0953 1.0352 9.6078
51 1 1.5932 0.6677 11.2882
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000978180870.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:01
Heat of formation + Delta-G solvation = 98.024630 kcal
Electronic energy + Delta-G solvation = -29483.413351 eV
Core-core repulsion = 25421.109989 eV
Total energy + Delta-G solvation = -4062.303362 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-43.64495 -40.77293 -39.96205 -38.66195 -36.29780 -35.01907 -34.60026 -32.66730
-31.70270 -30.43757 -28.98777 -28.71078 -28.53528 -26.95494 -25.71229 -23.82207
-22.77154 -22.44338 -22.10546 -21.69089 -20.82858 -20.59250 -18.97283 -18.83519
-17.79720 -17.28584 -17.08492 -16.70660 -16.51375 -16.30457 -15.98384 -15.79335
-15.45469 -15.22484 -15.08525 -14.79957 -14.60126 -14.41942 -14.29960 -14.05523
-13.94055 -13.40616 -13.38092 -13.17919 -12.96490 -12.80404 -12.69447 -12.61294
-12.55670 -12.34149 -12.19032 -12.02959 -11.96048 -11.85364 -11.64322 -11.42872
-10.94737 -10.76959 -10.57040 -10.32903 -10.11507 -9.94793 -9.48909 -8.95687
-7.75669 -5.23092 0.51124 1.20996 1.43576 1.46846 1.50331 1.56598
2.08453 2.35921 2.48743 2.74100 2.93896 3.30712 3.36816 3.57596
3.65235 3.73145 3.80010 3.86962 3.99882 4.12613 4.21474 4.22676
4.25603 4.30362 4.40479 4.45638 4.56302 4.59142 4.62960 4.64769
4.70091 4.73012 4.77135 4.80768 4.83729 4.92231 4.99251 5.00335
5.03298 5.17154 5.32569 5.34213 5.41497 5.44535 5.49635 5.79443
5.79670 5.88332 5.96640 6.27731 6.40500 6.89462 7.02542 7.13115
7.69921 8.45196 9.25409
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.011182 B = 0.001977 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2503.450974 B =14162.716035 C =16062.420682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.544 5.544
3 C 0.013 3.987
4 C 0.045 3.955
5 C 0.122 3.878
6 N -0.276 5.276
7 C 0.007 3.993
8 C -0.201 4.201
9 C -0.043 4.043
10 C 0.600 3.400
11 O -0.573 6.573
12 N -0.704 5.704
13 C 0.163 3.837
14 C -0.114 4.114
15 H 0.106 0.894
16 C -0.163 4.163
17 H 0.121 0.879
18 C 0.153 3.847
19 N -0.628 5.628
20 C -0.232 4.232
21 H 0.083 0.917
22 C -0.072 4.072
23 N -0.950 5.950
24 Si 0.984 3.016
25 H -0.278 1.278
26 H -0.293 1.293
27 H -0.278 1.278
28 C 0.154 3.846
29 C -0.168 4.168
30 H 0.109 0.891
31 N -0.275 5.275
32 H 0.021 0.979
33 H 0.083 0.917
34 H 0.074 0.926
35 H 0.082 0.918
36 H 0.081 0.919
37 H 0.021 0.979
38 H 0.079 0.921
39 H 0.034 0.966
40 H 0.102 0.898
41 H 0.145 0.855
42 H 0.229 0.771
43 H 0.165 0.835
44 H 0.414 0.586
45 H 0.070 0.930
46 H 0.072 0.928
47 H 0.055 0.945
48 H 0.030 0.970
49 H 0.248 0.752
50 H 0.002 0.998
51 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.686 -8.050 -31.849 33.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.269 5.269
3 C -0.135 4.135
4 C -0.084 4.084
5 C 0.003 3.997
6 N -0.065 5.065
7 C -0.136 4.136
8 C -0.230 4.230
9 C -0.202 4.202
10 C 0.386 3.614
11 O -0.451 6.451
12 N -0.355 5.355
13 C 0.040 3.960
14 C -0.133 4.133
15 H 0.124 0.876
16 C -0.183 4.183
17 H 0.139 0.861
18 C 0.028 3.972
19 N -0.353 5.353
20 C -0.361 4.361
21 H 0.101 0.899
22 C -0.263 4.263
23 N -0.600 5.600
24 Si 0.812 3.188
25 H -0.205 1.205
26 H -0.219 1.219
27 H -0.204 1.204
28 C 0.030 3.970
29 C -0.189 4.189
30 H 0.127 0.873
31 N -0.112 5.112
32 H 0.039 0.961
33 H 0.102 0.898
34 H 0.093 0.907
35 H 0.100 0.900
36 H 0.100 0.900
37 H 0.039 0.961
38 H 0.097 0.903
39 H 0.052 0.948
40 H 0.120 0.880
41 H 0.163 0.837
42 H 0.245 0.755
43 H 0.182 0.818
44 H 0.250 0.750
45 H 0.089 0.911
46 H 0.091 0.909
47 H 0.074 0.926
48 H 0.047 0.953
49 H 0.058 0.942
50 H 0.020 0.980
51 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 4.463 -7.718 -31.671 32.902
hybrid contribution -0.426 0.650 1.683 1.854
sum 4.037 -7.068 -29.988 31.073
Atomic orbital electron populations
1.22451 0.86080 1.03027 1.01059 1.62002 1.08991 1.14612 1.41265
1.22596 1.01682 0.88127 1.01102 1.22255 0.94150 0.99485 0.92505
1.22260 0.94132 0.98108 0.85182 1.45808 1.37306 1.18911 1.04436
1.23507 0.99275 0.89673 1.01135 1.22008 1.06886 1.02455 0.91603
1.21806 1.06802 0.98174 0.93431 1.17206 0.77913 0.81190 0.85069
1.90762 1.45669 1.38659 1.70008 1.45797 1.55395 1.27049 1.07250
1.20755 1.00058 0.96448 0.78780 1.22413 1.00714 0.96252 0.93880
0.87572 1.23951 0.97314 0.92004 1.04983 0.86137 1.21241 0.93200
0.94171 0.88567 1.46476 1.51116 1.15815 1.21922 1.19456 1.21938
0.95724 0.98936 0.89931 1.25620 0.99776 0.99886 1.01065 1.69754
1.33862 1.24830 1.31522 0.85068 0.77400 0.78036 0.78310 1.20456
1.21925 1.20371 1.22303 0.90573 0.83068 1.01081 1.23876 1.01179
1.01152 0.92658 0.87338 1.73426 1.21370 1.25091 0.91318 0.96081
0.89819 0.90733 0.89951 0.90003 0.96081 0.90251 0.94788 0.88013
0.83728 0.75479 0.81776 0.74988 0.91135 0.90936 0.92615 0.95266
0.94174 0.97987 0.87877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.20 9.57 127.69 1.22 1.42 16
2 N -0.54 -5.22 5.02 -948.84 -4.76 -9.98 16
3 C 0.01 0.11 9.32 127.69 1.19 1.30 16
4 C 0.05 0.48 5.06 86.30 0.44 0.92 16
5 C 0.12 0.92 6.32 86.38 0.55 1.47 16
6 N -0.28 -3.86 3.41 -347.95 -1.19 -5.05 16
7 C 0.01 0.08 11.40 83.54 0.95 1.03 16
8 C -0.20 -3.86 10.81 22.41 0.24 -3.61 16
9 C -0.04 -1.07 7.13 42.46 0.30 -0.76 16
10 C 0.60 17.66 7.82 86.75 0.68 18.34 16
11 O -0.57 -20.39 16.93 -3.92 -0.07 -20.46 16
12 N -0.70 -18.74 5.55 -466.09 -2.59 -21.32 16
13 C 0.16 4.62 5.95 86.38 0.51 5.13 16
14 C -0.11 -3.55 5.38 -10.79 -0.06 -3.61 16
15 H 0.11 3.28 8.04 -2.39 -0.02 3.26 16
16 C -0.16 -5.80 6.74 -9.88 -0.07 -5.87 16
17 H 0.12 3.91 8.12 -2.39 -0.02 3.89 16
18 C 0.15 6.43 7.05 86.53 0.61 7.05 16
19 N -0.63 -33.08 3.46 -678.17 -2.35 -35.43 16
20 C -0.23 -13.18 10.42 84.03 0.88 -12.30 16
21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16
22 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16
23 N -0.95 -57.00 10.12 21.65 0.22 -56.78 16
24 Si 0.98 46.05 29.55 68.60 2.03 48.08 16
25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16
27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
28 C 0.15 7.70 6.43 85.80 0.55 8.25 16
29 C -0.17 -6.62 6.76 -9.88 -0.07 -6.69 16
30 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16
31 N -0.27 -5.80 11.35 -48.18 -0.55 -6.35 16
32 H 0.02 0.23 8.14 -2.38 -0.02 0.22 16
33 H 0.08 0.59 8.12 -2.38 -0.02 0.57 16
34 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16
35 H 0.08 0.47 6.47 -2.39 -0.02 0.45 16
36 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16
37 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16
38 H 0.08 0.91 8.06 -2.39 -0.02 0.89 16
39 H 0.03 0.53 8.06 -2.39 -0.02 0.51 16
40 H 0.10 0.68 6.55 -2.39 -0.02 0.66 16
41 H 0.14 0.22 8.04 -2.39 -0.02 0.20 16
42 H 0.23 0.36 8.06 -2.91 -0.02 0.33 16
43 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16
44 H 0.41 9.87 8.13 -92.71 -0.75 9.12 16
45 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16
46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
47 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16
48 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16
49 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16
50 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16
51 H 0.10 5.89 5.34 -2.39 -0.01 5.88 16
Total: -1.00 -74.88 416.75 -0.68 -75.56
By element:
Atomic # 1 Polarization: 23.13 SS G_CDS: 0.17 Total: 23.30 kcal
Atomic # 6 Polarization: 0.04 SS G_CDS: 8.40 Total: 8.44 kcal
Atomic # 7 Polarization: -123.71 SS G_CDS: -11.21 Total: -134.92 kcal
Atomic # 8 Polarization: -20.39 SS G_CDS: -0.07 Total: -20.46 kcal
Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal
Total: -74.88 -0.68 -75.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000978180870.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 173.583 kcal
(2) G-P(sol) polarization free energy of solvation -74.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.25 seconds