Wall clock time and date at job start Wed Apr 1 2020 04:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00243 * 2 1 4 4 C 1.46905 * 110.99675 * 123.95176 * 2 1 3 5 5 C 1.52997 * 109.46941 * 169.99551 * 4 2 1 6 6 N 1.46502 * 109.47002 * 179.97438 * 5 4 2 7 7 C 1.35033 * 124.88144 * 125.00127 * 6 5 4 8 8 C 1.35366 * 107.22825 * 179.97438 * 7 6 5 9 9 C 1.41493 * 105.50215 * 359.97438 * 8 7 6 10 10 C 1.47715 * 126.51668 * 179.97438 * 9 8 7 11 11 O 1.21564 * 119.99864 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99772 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46794 * 180.02562 * 13 12 10 15 15 H 1.08996 * 115.50111 * 29.61255 * 14 13 12 16 16 C 1.53005 * 117.43751 * 244.23808 * 14 13 12 17 17 H 1.09002 * 119.54133 * 4.11706 * 16 14 13 18 18 C 1.54388 * 118.11953 * 160.80919 * 16 14 13 19 19 N 1.48147 * 104.61527 * 87.19121 * 18 16 14 20 20 C 1.36944 * 127.83511 * 140.41382 * 19 18 16 21 21 H 1.07995 * 120.00220 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99397 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00462 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99395 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47349 * 59.99662 * 24 22 20 26 26 H 1.48501 * 109.46924 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46972 * 299.99435 * 24 22 20 28 28 C 1.51827 * 104.55132 * 320.13659 * 19 18 16 29 29 C 1.53001 * 117.43931 * 175.00103 * 14 13 12 30 30 H 1.09002 * 119.53987 * 355.87593 * 29 14 13 31 31 N 1.28462 * 124.88929 * 305.25220 * 6 5 4 32 32 H 1.09007 * 109.47020 * 296.05050 * 1 2 3 33 33 H 1.09007 * 109.46861 * 56.04275 * 1 2 3 34 34 H 1.08993 * 109.47380 * 176.04442 * 1 2 3 35 35 H 1.09001 * 109.46948 * 183.95146 * 3 2 1 36 36 H 1.08997 * 109.47077 * 303.95044 * 3 2 1 37 37 H 1.08998 * 109.46995 * 63.95173 * 3 2 1 38 38 H 1.09001 * 109.46675 * 50.00240 * 4 2 1 39 39 H 1.08992 * 109.47406 * 290.00138 * 4 2 1 40 40 H 1.08998 * 109.47188 * 60.00396 * 5 4 2 41 41 H 1.09002 * 109.47626 * 300.00475 * 5 4 2 42 42 H 1.08005 * 126.38990 * 359.94350 * 7 6 5 43 43 H 1.07999 * 127.24641 * 179.97438 * 8 7 6 44 44 H 0.97003 * 120.00429 * 0.02562 * 12 10 9 45 45 H 1.08993 * 109.47196 * 60.00048 * 13 12 10 46 46 H 1.09001 * 109.46776 * 299.99514 * 13 12 10 47 47 H 1.09005 * 110.40063 * 205.97149 * 18 16 14 48 48 H 1.08991 * 110.41105 * 328.40677 * 18 16 14 49 49 H 0.96998 * 120.00080 * 180.02562 * 23 22 20 50 50 H 1.08997 * 110.21952 * 281.99947 * 28 19 18 51 51 H 1.09001 * 112.25708 * 158.41268 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 3.5043 -0.9555 0.9704 6 7 4.0294 -1.7188 2.1053 7 6 4.7431 -2.8606 2.0039 8 6 5.0440 -3.2584 3.2624 9 6 4.4680 -2.2864 4.1141 10 6 4.5175 -2.2711 5.5903 11 8 5.0977 -3.1564 6.1882 12 7 3.9194 -1.2757 6.2743 13 6 3.9690 -1.2602 7.7385 14 6 3.2184 -0.0337 8.2612 15 1 2.3979 0.3165 7.6349 16 6 4.0305 1.0218 9.0145 17 1 5.1115 0.9095 9.0981 18 6 3.4316 2.4380 9.1538 19 7 2.5977 2.3726 10.3765 20 6 2.4552 3.3271 11.3481 21 1 2.9902 4.2619 11.2694 22 6 1.6237 3.0926 12.4346 23 7 0.9720 1.9531 12.5308 24 14 1.4287 4.3949 13.7596 25 1 0.8873 5.6387 13.1553 26 1 0.4926 3.9037 14.8025 27 1 2.7507 4.6778 14.3740 28 6 1.9288 1.0113 10.3097 29 6 3.0556 0.1003 9.7766 30 1 3.4104 -0.6984 10.4280 31 7 3.8731 -1.4008 3.3401 32 1 -0.3633 0.4513 0.9233 33 1 -0.3633 0.5741 -0.8525 34 1 -0.3634 -1.0251 -0.0709 35 1 3.0828 1.3431 -0.0708 36 1 1.5899 1.9163 -0.8524 37 1 1.7044 1.8723 0.9233 38 1 1.5088 -1.7406 1.1756 39 1 1.7974 -0.2248 2.0628 40 1 3.9909 0.0191 0.9324 41 1 3.7023 -1.4967 0.0452 42 1 5.0217 -3.3631 1.0894 43 1 5.6055 -4.1334 3.5546 44 1 3.4561 -0.5695 5.7973 45 1 5.0076 -1.2180 8.0664 46 1 3.5016 -2.1648 8.1274 47 1 4.2249 3.1759 9.2737 48 1 2.8164 2.6775 8.2866 49 1 0.3908 1.7895 13.2899 50 1 1.0953 1.0352 9.6078 51 1 1.5932 0.6677 11.2882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978180870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:01 Heat of formation + Delta-G solvation = 98.024630 kcal Electronic energy + Delta-G solvation = -29483.413351 eV Core-core repulsion = 25421.109989 eV Total energy + Delta-G solvation = -4062.303362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.64495 -40.77293 -39.96205 -38.66195 -36.29780 -35.01907 -34.60026 -32.66730 -31.70270 -30.43757 -28.98777 -28.71078 -28.53528 -26.95494 -25.71229 -23.82207 -22.77154 -22.44338 -22.10546 -21.69089 -20.82858 -20.59250 -18.97283 -18.83519 -17.79720 -17.28584 -17.08492 -16.70660 -16.51375 -16.30457 -15.98384 -15.79335 -15.45469 -15.22484 -15.08525 -14.79957 -14.60126 -14.41942 -14.29960 -14.05523 -13.94055 -13.40616 -13.38092 -13.17919 -12.96490 -12.80404 -12.69447 -12.61294 -12.55670 -12.34149 -12.19032 -12.02959 -11.96048 -11.85364 -11.64322 -11.42872 -10.94737 -10.76959 -10.57040 -10.32903 -10.11507 -9.94793 -9.48909 -8.95687 -7.75669 -5.23092 0.51124 1.20996 1.43576 1.46846 1.50331 1.56598 2.08453 2.35921 2.48743 2.74100 2.93896 3.30712 3.36816 3.57596 3.65235 3.73145 3.80010 3.86962 3.99882 4.12613 4.21474 4.22676 4.25603 4.30362 4.40479 4.45638 4.56302 4.59142 4.62960 4.64769 4.70091 4.73012 4.77135 4.80768 4.83729 4.92231 4.99251 5.00335 5.03298 5.17154 5.32569 5.34213 5.41497 5.44535 5.49635 5.79443 5.79670 5.88332 5.96640 6.27731 6.40500 6.89462 7.02542 7.13115 7.69921 8.45196 9.25409 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.001977 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.450974 B =14162.716035 C =16062.420682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.013 3.987 4 C 0.045 3.955 5 C 0.122 3.878 6 N -0.276 5.276 7 C 0.007 3.993 8 C -0.201 4.201 9 C -0.043 4.043 10 C 0.600 3.400 11 O -0.573 6.573 12 N -0.704 5.704 13 C 0.163 3.837 14 C -0.114 4.114 15 H 0.106 0.894 16 C -0.163 4.163 17 H 0.121 0.879 18 C 0.153 3.847 19 N -0.628 5.628 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.072 4.072 23 N -0.950 5.950 24 Si 0.984 3.016 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.154 3.846 29 C -0.168 4.168 30 H 0.109 0.891 31 N -0.275 5.275 32 H 0.021 0.979 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.229 0.771 43 H 0.165 0.835 44 H 0.414 0.586 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.248 0.752 50 H 0.002 0.998 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.686 -8.050 -31.849 33.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.135 4.135 4 C -0.084 4.084 5 C 0.003 3.997 6 N -0.065 5.065 7 C -0.136 4.136 8 C -0.230 4.230 9 C -0.202 4.202 10 C 0.386 3.614 11 O -0.451 6.451 12 N -0.355 5.355 13 C 0.040 3.960 14 C -0.133 4.133 15 H 0.124 0.876 16 C -0.183 4.183 17 H 0.139 0.861 18 C 0.028 3.972 19 N -0.353 5.353 20 C -0.361 4.361 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.812 3.188 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.204 1.204 28 C 0.030 3.970 29 C -0.189 4.189 30 H 0.127 0.873 31 N -0.112 5.112 32 H 0.039 0.961 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.039 0.961 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.245 0.755 43 H 0.182 0.818 44 H 0.250 0.750 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.058 0.942 50 H 0.020 0.980 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.463 -7.718 -31.671 32.902 hybrid contribution -0.426 0.650 1.683 1.854 sum 4.037 -7.068 -29.988 31.073 Atomic orbital electron populations 1.22451 0.86080 1.03027 1.01059 1.62002 1.08991 1.14612 1.41265 1.22596 1.01682 0.88127 1.01102 1.22255 0.94150 0.99485 0.92505 1.22260 0.94132 0.98108 0.85182 1.45808 1.37306 1.18911 1.04436 1.23507 0.99275 0.89673 1.01135 1.22008 1.06886 1.02455 0.91603 1.21806 1.06802 0.98174 0.93431 1.17206 0.77913 0.81190 0.85069 1.90762 1.45669 1.38659 1.70008 1.45797 1.55395 1.27049 1.07250 1.20755 1.00058 0.96448 0.78780 1.22413 1.00714 0.96252 0.93880 0.87572 1.23951 0.97314 0.92004 1.04983 0.86137 1.21241 0.93200 0.94171 0.88567 1.46476 1.51116 1.15815 1.21922 1.19456 1.21938 0.95724 0.98936 0.89931 1.25620 0.99776 0.99886 1.01065 1.69754 1.33862 1.24830 1.31522 0.85068 0.77400 0.78036 0.78310 1.20456 1.21925 1.20371 1.22303 0.90573 0.83068 1.01081 1.23876 1.01179 1.01152 0.92658 0.87338 1.73426 1.21370 1.25091 0.91318 0.96081 0.89819 0.90733 0.89951 0.90003 0.96081 0.90251 0.94788 0.88013 0.83728 0.75479 0.81776 0.74988 0.91135 0.90936 0.92615 0.95266 0.94174 0.97987 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.57 127.69 1.22 1.42 16 2 N -0.54 -5.22 5.02 -948.84 -4.76 -9.98 16 3 C 0.01 0.11 9.32 127.69 1.19 1.30 16 4 C 0.05 0.48 5.06 86.30 0.44 0.92 16 5 C 0.12 0.92 6.32 86.38 0.55 1.47 16 6 N -0.28 -3.86 3.41 -347.95 -1.19 -5.05 16 7 C 0.01 0.08 11.40 83.54 0.95 1.03 16 8 C -0.20 -3.86 10.81 22.41 0.24 -3.61 16 9 C -0.04 -1.07 7.13 42.46 0.30 -0.76 16 10 C 0.60 17.66 7.82 86.75 0.68 18.34 16 11 O -0.57 -20.39 16.93 -3.92 -0.07 -20.46 16 12 N -0.70 -18.74 5.55 -466.09 -2.59 -21.32 16 13 C 0.16 4.62 5.95 86.38 0.51 5.13 16 14 C -0.11 -3.55 5.38 -10.79 -0.06 -3.61 16 15 H 0.11 3.28 8.04 -2.39 -0.02 3.26 16 16 C -0.16 -5.80 6.74 -9.88 -0.07 -5.87 16 17 H 0.12 3.91 8.12 -2.39 -0.02 3.89 16 18 C 0.15 6.43 7.05 86.53 0.61 7.05 16 19 N -0.63 -33.08 3.46 -678.17 -2.35 -35.43 16 20 C -0.23 -13.18 10.42 84.03 0.88 -12.30 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 22 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 23 N -0.95 -57.00 10.12 21.65 0.22 -56.78 16 24 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 28 C 0.15 7.70 6.43 85.80 0.55 8.25 16 29 C -0.17 -6.62 6.76 -9.88 -0.07 -6.69 16 30 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 31 N -0.27 -5.80 11.35 -48.18 -0.55 -6.35 16 32 H 0.02 0.23 8.14 -2.38 -0.02 0.22 16 33 H 0.08 0.59 8.12 -2.38 -0.02 0.57 16 34 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.08 0.47 6.47 -2.39 -0.02 0.45 16 36 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 37 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.08 0.91 8.06 -2.39 -0.02 0.89 16 39 H 0.03 0.53 8.06 -2.39 -0.02 0.51 16 40 H 0.10 0.68 6.55 -2.39 -0.02 0.66 16 41 H 0.14 0.22 8.04 -2.39 -0.02 0.20 16 42 H 0.23 0.36 8.06 -2.91 -0.02 0.33 16 43 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 44 H 0.41 9.87 8.13 -92.71 -0.75 9.12 16 45 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 48 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 50 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 51 H 0.10 5.89 5.34 -2.39 -0.01 5.88 16 Total: -1.00 -74.88 416.75 -0.68 -75.56 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.17 Total: 23.30 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 8.40 Total: 8.44 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -11.21 Total: -134.92 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.07 Total: -20.46 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -74.88 -0.68 -75.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978180870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.583 kcal (2) G-P(sol) polarization free energy of solvation -74.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds