Wall clock time and date at job start Wed Apr 1 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00320 * 2 1 4 4 H 1.48493 * 109.47426 * 239.99823 * 3 2 1 5 5 H 1.48496 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47152 * 119.99932 * 3 2 1 7 7 C 1.38821 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 164.12476 * 7 2 1 9 9 N 1.36940 * 119.99533 * 344.40113 * 7 2 1 10 10 C 1.46896 * 120.68721 * 152.72623 * 9 7 2 11 11 C 1.53136 * 109.09860 * 124.66364 * 10 9 7 12 12 C 1.53188 * 109.35724 * 56.44431 * 11 10 9 13 13 C 1.52631 * 109.34122 * 300.93622 * 12 11 10 14 14 C 1.53461 * 113.67498 * 286.00151 * 13 12 11 15 15 N 1.47671 * 85.96406 * 222.10232 * 14 13 12 16 16 C 1.34785 * 134.44991 * 204.28818 * 15 14 13 17 17 O 1.21288 * 119.99426 * 179.97438 * 16 15 14 18 18 C 1.50690 * 120.00275 * 359.97438 * 16 15 14 19 19 H 1.09005 * 110.12963 * 336.22451 * 18 16 15 20 20 C 1.54802 * 110.15636 * 97.91702 * 18 16 15 21 21 C 1.55489 * 104.91113 * 115.46206 * 20 18 16 22 22 C 1.53921 * 102.11705 * 337.85410 * 21 20 18 23 23 H 1.09007 * 110.99718 * 281.30969 * 22 21 20 24 24 C 1.52361 * 113.82972 * 155.30357 * 22 21 20 25 25 C 1.53633 * 107.59721 * 184.77919 * 24 22 21 26 26 C 1.52830 * 110.61542 * 56.40918 * 25 24 22 27 27 C 1.52337 * 110.75419 * 306.41645 * 26 25 24 28 28 N 1.45528 * 108.55973 * 56.68614 * 27 26 25 29 29 C 1.47668 * 91.09294 * 24.28372 * 15 14 13 30 30 C 1.47115 * 120.68874 * 332.44104 * 9 7 2 31 31 H 0.97002 * 119.99615 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.53179 * 244.54869 * 10 9 7 33 33 H 1.08997 * 109.53102 * 4.69899 * 10 9 7 34 34 H 1.09005 * 109.49277 * 176.40549 * 11 10 9 35 35 H 1.09002 * 109.49401 * 296.47532 * 11 10 9 36 36 H 1.08999 * 109.49642 * 60.89969 * 12 11 10 37 37 H 1.09003 * 109.49227 * 180.97775 * 12 11 10 38 38 H 1.09001 * 113.79495 * 336.36137 * 14 13 12 39 39 H 1.08999 * 113.79466 * 107.83802 * 14 13 12 40 40 H 1.08995 * 110.33535 * 234.36073 * 20 18 16 41 41 H 1.09001 * 110.33415 * 356.60220 * 20 18 16 42 42 H 1.09001 * 110.91594 * 219.63559 * 21 20 18 43 43 H 1.09002 * 110.90628 * 96.06205 * 21 20 18 44 44 H 1.08996 * 109.83497 * 304.30137 * 24 22 21 45 45 H 1.08999 * 109.83482 * 65.25403 * 24 22 21 46 46 H 1.09003 * 109.24910 * 176.70089 * 25 24 22 47 47 H 1.09000 * 109.24931 * 296.15011 * 25 24 22 48 48 H 1.09000 * 109.23780 * 66.42916 * 26 25 24 49 49 H 1.09000 * 109.24167 * 185.87439 * 26 25 24 50 50 H 1.09004 * 108.98495 * 297.14513 * 27 26 25 51 51 H 1.09000 * 109.88612 * 176.76466 * 27 26 25 52 52 H 1.09003 * 113.79047 * 221.44707 * 29 15 14 53 53 H 1.08999 * 113.89797 * 89.99338 * 29 15 14 54 54 H 1.09003 * 109.64617 * 351.08704 * 30 9 7 55 55 H 1.09010 * 109.63754 * 111.70030 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0594 -1.2200 -0.2564 9 7 1.3633 -2.3664 0.3179 10 6 1.8288 -3.6531 -0.2166 11 6 2.0906 -4.6137 0.9469 12 6 0.8177 -4.7514 1.7879 13 6 0.4089 -3.3784 2.3147 14 6 1.3002 -2.8649 3.4535 15 7 0.0466 -2.4170 4.0927 16 6 -0.2648 -1.4681 4.9978 17 8 -1.4161 -1.3201 5.3495 18 6 0.8174 -0.5912 5.5728 19 1 1.7833 -1.0914 5.5009 20 6 0.8610 0.7628 4.8237 21 6 0.4705 1.8235 5.8914 22 6 -0.2909 0.9755 6.9259 23 1 -1.3082 0.7719 6.5914 24 6 -0.2877 1.5679 8.3297 25 6 -0.9747 0.5580 9.2615 26 6 -0.2774 -0.8001 9.1909 27 6 -0.1793 -1.2822 7.7491 28 7 0.5182 -0.2709 6.9690 29 6 -0.7291 -3.4252 3.3427 30 6 0.1915 -2.3552 1.2073 31 1 -0.4850 0.8401 -0.0004 32 1 1.0654 -4.0733 -0.8714 33 1 2.7494 -3.5019 -0.7802 34 1 2.3750 -5.5904 0.5552 35 1 2.8962 -4.2219 1.5678 36 1 0.0162 -5.1577 1.1710 37 1 1.0067 -5.4213 2.6268 38 1 1.8144 -3.6554 4.0001 39 1 1.9608 -2.0487 3.1611 40 1 1.8656 0.9550 4.4469 41 1 0.1414 0.7660 4.0050 42 1 -0.1775 2.5876 5.4620 43 1 1.3585 2.2738 6.3353 44 1 0.7380 1.7356 8.6580 45 1 -0.8372 2.5092 8.3351 46 1 -0.9352 0.9293 10.2856 47 1 -2.0161 0.4426 8.9612 48 1 0.7276 -0.7097 9.6032 49 1 -0.8423 -1.5250 9.7770 50 1 -1.1850 -1.4246 7.3536 51 1 0.3701 -2.2228 7.7093 52 1 -1.6808 -3.0541 2.9623 53 1 -0.8200 -4.3831 3.8549 54 1 0.0728 -1.3637 1.6444 55 1 -0.7015 -2.6180 0.6400 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981841948.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:17 Heat of formation + Delta-G solvation = 5.513390 kcal Electronic energy + Delta-G solvation = -33644.714919 eV Core-core repulsion = 29681.940312 eV Total energy + Delta-G solvation = -3962.774607 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.20923 -41.12436 -38.93957 -37.31368 -36.01604 -34.70703 -33.29649 -32.20478 -31.49016 -30.31364 -28.93342 -27.46796 -27.19575 -26.85870 -24.12884 -23.95842 -23.25352 -22.24169 -21.97445 -21.01458 -20.04633 -19.41042 -18.57250 -18.16402 -17.34928 -16.77684 -16.69533 -16.56837 -16.30367 -15.73302 -15.53586 -15.26102 -15.20200 -15.13866 -14.69204 -14.51097 -14.27274 -14.17609 -13.95249 -13.68777 -13.60866 -13.36648 -13.31335 -13.15597 -12.94167 -12.76708 -12.66382 -12.56338 -12.38055 -12.28199 -12.03881 -11.99579 -11.88802 -11.77468 -11.58260 -11.52032 -11.36022 -11.32893 -11.24586 -11.04217 -10.93737 -10.52564 -9.68799 -9.30884 -8.66744 -7.86456 -5.30517 1.45011 1.46513 1.46945 1.53041 1.81465 2.50537 2.83471 3.21175 3.31318 3.41907 3.46416 3.61032 3.78451 3.92589 3.96413 4.01001 4.07467 4.07753 4.16197 4.32218 4.33263 4.34053 4.38041 4.40451 4.46819 4.56478 4.59765 4.62143 4.64919 4.71536 4.77435 4.83069 4.84074 4.89653 4.91603 4.96818 5.01709 5.04841 5.07169 5.09775 5.11911 5.19360 5.23120 5.27449 5.28490 5.34847 5.47240 5.47762 5.61089 5.67249 5.75506 5.84549 6.06564 6.38727 6.69180 7.04872 7.15702 7.88623 8.39814 9.19344 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004123 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.296318 B = 6789.057406 C = 8501.711665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.254 4.254 8 H 0.071 0.929 9 N -0.605 5.605 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.089 4.089 13 C -0.103 4.103 14 C 0.125 3.875 15 N -0.638 5.638 16 C 0.508 3.492 17 O -0.586 6.586 18 C 0.073 3.927 19 H 0.112 0.888 20 C -0.114 4.114 21 C -0.107 4.107 22 C 0.061 3.939 23 H 0.034 0.966 24 C -0.097 4.097 25 C -0.119 4.119 26 C -0.105 4.105 27 C 0.044 3.956 28 N -0.500 5.500 29 C 0.112 3.888 30 C 0.214 3.786 31 H 0.244 0.756 32 H 0.009 0.991 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.044 0.956 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.031 0.969 51 H 0.066 0.934 52 H 0.051 0.949 53 H 0.113 0.887 54 H 0.051 0.949 55 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 -5.342 16.452 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.240 4.240 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.328 5.328 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.004 3.996 15 N -0.371 5.371 16 C 0.297 3.703 17 O -0.468 6.468 18 C -0.039 4.039 19 H 0.130 0.870 20 C -0.153 4.153 21 C -0.145 4.145 22 C -0.046 4.046 23 H 0.052 0.948 24 C -0.135 4.135 25 C -0.156 4.156 26 C -0.143 4.143 27 C -0.084 4.084 28 N -0.223 5.223 29 C -0.010 4.010 30 C 0.088 3.912 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.050 0.950 51 H 0.084 0.916 52 H 0.070 0.930 53 H 0.131 0.869 54 H 0.070 0.930 55 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges 3.887 -4.948 17.018 18.144 hybrid contribution -1.122 0.850 -1.375 1.968 sum 2.765 -4.099 15.643 16.405 Atomic orbital electron populations 1.70180 1.06731 1.25382 1.55889 1.25667 0.95708 1.01102 1.01524 0.85568 0.77746 0.79892 0.78781 1.20118 1.22885 1.19560 1.19458 0.92490 0.85547 1.40933 0.91170 1.44256 1.33253 1.02543 1.52783 1.21114 0.96965 0.86151 0.94749 1.21884 0.97413 0.99348 0.97313 1.21314 0.97930 0.93327 1.00120 1.22555 0.95015 0.98453 0.94557 1.23319 0.87564 0.98720 0.90026 1.50272 1.13144 1.33103 1.40592 1.21796 0.90458 0.80562 0.77435 1.90588 1.22942 1.71765 1.61474 1.22246 0.96861 0.95579 0.89261 0.86986 1.22532 1.02505 0.92764 0.97464 1.22412 1.01109 0.96334 0.94629 1.22686 0.94713 0.90172 0.97072 0.94834 1.21492 1.02258 0.98070 0.91662 1.21579 0.98562 0.94998 1.00510 1.21324 1.01921 0.97253 0.93819 1.21937 0.96982 0.94352 0.95080 1.63348 1.44134 1.05770 1.09087 1.23299 0.96060 0.91785 0.89902 1.20002 0.87146 0.95982 0.88107 0.94692 0.97267 0.92867 0.89595 0.91901 0.92057 0.89058 0.86648 0.91315 0.89292 0.94496 0.90849 0.88228 0.89855 0.90359 0.89576 0.93696 0.90506 0.90569 0.95046 0.91569 0.93012 0.86904 0.93049 0.99878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 11.12 21.65 0.24 -55.54 16 2 C -0.04 -2.45 4.96 84.86 0.42 -2.03 16 3 Si 0.95 44.22 29.58 68.60 2.03 46.25 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.25 -13.38 9.60 84.04 0.81 -12.57 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -28.67 3.01 -700.41 -2.11 -30.78 16 10 C 0.14 5.13 6.46 86.35 0.56 5.69 16 11 C -0.12 -3.31 6.01 30.70 0.18 -3.12 16 12 C -0.09 -2.32 5.07 30.53 0.15 -2.17 16 13 C -0.10 -3.47 0.87 -52.19 -0.05 -3.51 16 14 C 0.13 3.84 7.08 86.30 0.61 4.46 16 15 N -0.64 -22.35 3.45 -843.40 -2.91 -25.27 16 16 C 0.51 19.17 6.17 87.65 0.54 19.71 16 17 O -0.59 -25.75 13.94 -3.05 -0.04 -25.80 16 18 C 0.07 2.32 3.49 44.89 0.16 2.48 16 19 H 0.11 3.26 7.72 -2.38 -0.02 3.24 16 20 C -0.11 -3.77 6.63 32.07 0.21 -3.56 16 21 C -0.11 -2.90 6.64 31.76 0.21 -2.69 16 22 C 0.06 1.71 2.33 44.67 0.10 1.82 16 23 H 0.03 1.18 7.09 -2.38 -0.02 1.16 16 24 C -0.10 -2.01 5.71 30.60 0.17 -1.83 16 25 C -0.12 -2.32 5.94 30.75 0.18 -2.13 16 26 C -0.11 -2.16 6.02 30.32 0.18 -1.97 16 27 C 0.04 1.22 4.79 86.34 0.41 1.64 16 28 N -0.50 -14.23 4.62 -847.93 -3.92 -18.14 16 29 C 0.11 3.66 7.97 86.30 0.69 4.35 16 30 C 0.21 9.97 4.30 86.04 0.37 10.34 16 31 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 38 H 0.12 2.64 8.07 -2.39 -0.02 2.62 16 39 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.04 1.49 7.71 -2.39 -0.02 1.47 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.10 2.24 8.12 -2.39 -0.02 2.22 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 49 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.03 1.08 5.74 -2.39 -0.01 1.07 16 51 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.05 1.95 8.09 -2.39 -0.02 1.93 16 53 H 0.11 2.86 8.09 -2.39 -0.02 2.84 16 54 H 0.05 2.83 5.95 -2.39 -0.01 2.81 16 55 H -0.02 -0.89 8.14 -2.38 -0.02 -0.90 16 Total: -1.00 -69.46 407.76 0.05 -69.41 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.84 Total: 24.99 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 5.93 Total: 14.88 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -8.70 Total: -129.73 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.04 Total: -25.80 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.46 0.05 -69.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981841948.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.924 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds