Wall clock time and date at job start Wed Apr 1 2020 06:02:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00109 * 2 1
4 4 H 1.48499 * 109.47075 * 269.69630 * 3 2 1
5 5 H 1.48497 * 109.47012 * 29.69790 * 3 2 1
6 6 H 1.48499 * 109.47150 * 149.69867 * 3 2 1
7 7 C 1.38813 * 119.99893 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00088 * 340.06926 * 7 2 1
9 9 N 1.36935 * 119.99896 * 160.06742 * 7 2 1
10 10 C 1.46893 * 120.70077 * 330.00998 * 9 7 2
11 11 C 1.53149 * 109.11947 * 235.42656 * 10 9 7
12 12 C 1.53217 * 109.34403 * 303.48263 * 11 10 9
13 13 C 1.52506 * 109.34969 * 58.89859 * 12 11 10
14 14 C 1.52915 * 114.17534 * 75.69650 * 13 12 11
15 15 N 1.47170 * 87.84281 * 88.17550 * 14 13 12
16 16 C 1.34774 * 135.99627 * 206.63259 * 15 14 13
17 17 O 1.21281 * 119.99866 * 359.97438 * 16 15 14
18 18 C 1.50699 * 120.00098 * 179.97438 * 16 15 14
19 19 H 1.09005 * 109.83268 * 63.02519 * 18 16 15
20 20 C 1.53626 * 109.79522 * 302.20412 * 18 16 15
21 21 C 1.52820 * 110.69672 * 297.79598 * 20 18 16
22 22 C 1.53666 * 110.61323 * 306.25137 * 21 20 18
23 23 C 1.52254 * 107.57138 * 56.12882 * 22 21 20
24 24 H 1.09001 * 110.78900 * 57.72947 * 23 22 21
25 25 C 1.53262 * 113.90140 * 182.75961 * 23 22 21
26 26 C 1.54987 * 104.19136 * 144.40616 * 25 23 22
27 27 C 1.55190 * 104.93003 * 357.51093 * 26 25 23
28 28 N 1.45664 * 109.79685 * 183.85220 * 18 16 15
29 29 C 1.47173 * 88.00562 * 26.88054 * 15 14 13
30 30 C 1.47144 * 120.69928 * 150.03521 * 9 7 2
31 31 H 0.97002 * 120.00024 * 359.97438 * 1 2 3
32 32 H 1.08996 * 109.53044 * 115.53371 * 10 9 7
33 33 H 1.08999 * 109.58989 * 355.35122 * 10 9 7
34 34 H 1.09003 * 109.48953 * 183.52669 * 11 10 9
35 35 H 1.08992 * 109.49766 * 63.44582 * 11 10 9
36 36 H 1.08994 * 109.48865 * 298.93694 * 12 11 10
37 37 H 1.08997 * 109.48705 * 178.86269 * 12 11 10
38 38 H 1.09000 * 113.49250 * 333.42727 * 14 13 12
39 39 H 1.09001 * 113.54911 * 202.92643 * 14 13 12
40 40 H 1.08998 * 109.23440 * 177.47949 * 20 18 16
41 41 H 1.08994 * 109.20040 * 58.08132 * 20 18 16
42 42 H 1.09004 * 109.24960 * 185.96665 * 21 20 18
43 43 H 1.08997 * 109.22097 * 66.52566 * 21 20 18
44 44 H 1.09000 * 109.84018 * 296.61219 * 22 21 20
45 45 H 1.09004 * 109.83462 * 175.64197 * 22 21 20
46 46 H 1.09003 * 110.48656 * 25.72428 * 25 23 22
47 47 H 1.09006 * 110.59883 * 263.14235 * 25 23 22
48 48 H 1.09001 * 110.34408 * 238.65053 * 26 25 23
49 49 H 1.08997 * 110.43921 * 116.42485 * 26 25 23
50 50 H 1.09002 * 110.61330 * 217.49550 * 27 26 25
51 51 H 1.08995 * 110.74476 * 94.57973 * 27 26 25
52 52 H 1.09008 * 113.49107 * 87.86062 * 29 15 14
53 53 H 1.09001 * 113.49579 * 218.36853 * 29 15 14
54 54 H 1.08995 * 109.64326 * 9.05458 * 30 9 7
55 55 H 1.09001 * 109.64038 * 248.43536 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.5041 2.0427 -1.4000
5 1 1.4445 2.6545 0.6936
6 1 3.5445 1.4420 0.7064
7 6 2.0102 -1.2022 0.0005
8 1 1.5187 -2.1093 0.3198
9 7 3.3180 -1.2379 -0.4037
10 6 3.8195 -0.2878 -1.4056
11 6 4.4472 -1.0665 -2.5654
12 6 5.5479 -1.9844 -2.0236
13 6 4.9484 -2.9425 -0.9997
14 6 4.1342 -4.0833 -1.6112
15 7 5.3845 -4.8547 -1.6983
16 6 5.8585 -5.8482 -2.4758
17 8 5.1695 -6.3049 -3.3633
18 6 7.2445 -6.3918 -2.2425
19 1 7.3028 -6.8435 -1.2522
20 6 8.2744 -5.2578 -2.3583
21 6 8.2628 -4.6592 -3.7644
22 6 8.4521 -5.7579 -4.8218
23 6 7.3587 -6.7955 -4.6074
24 1 6.3720 -6.3375 -4.6760
25 6 7.4522 -8.0001 -5.5503
26 6 6.9895 -9.1984 -4.6830
27 6 6.7242 -8.5959 -3.2776
28 7 7.5616 -7.3868 -3.2580
29 6 5.8879 -4.0695 -0.5598
30 6 4.2505 -2.2291 0.1558
31 1 -0.4850 0.8401 0.0004
32 1 4.5710 0.3579 -0.9513
33 1 2.9947 0.3193 -1.7785
34 1 4.8771 -0.3672 -3.2825
35 1 3.6818 -1.6673 -3.0566
36 1 6.3223 -1.3823 -1.5485
37 1 5.9825 -2.5547 -2.8445
38 1 3.7058 -3.8390 -2.5832
39 1 3.4048 -4.5142 -0.9252
40 1 9.2679 -5.6517 -2.1440
41 1 8.0332 -4.4792 -1.6347
42 1 9.0708 -3.9328 -3.8524
43 1 7.3095 -4.1584 -3.9333
44 1 9.4311 -6.2220 -4.7018
45 1 8.3648 -5.3294 -5.8202
46 1 8.4799 -8.1447 -5.8837
47 1 6.7894 -7.8699 -6.4058
48 1 7.7742 -9.9531 -4.6298
49 1 6.0751 -9.6312 -5.0887
50 1 7.0350 -9.2906 -2.4973
51 1 5.6721 -8.3358 -3.1614
52 1 5.6307 -4.4960 0.4098
53 1 6.9443 -3.8136 -0.6416
54 1 3.6989 -2.9540 0.7544
55 1 4.9917 -1.7254 0.7764
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000982063801.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:02:07
Heat of formation + Delta-G solvation = 25.290421 kcal
Electronic energy + Delta-G solvation = -33408.748379 eV
Core-core repulsion = 29446.831368 eV
Total energy + Delta-G solvation = -3961.917011 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.231 amu
Computer time = 1.42 seconds
Orbital eigenvalues (eV)
-42.48956 -41.23499 -38.79124 -37.65196 -36.01768 -34.52407 -33.43900 -32.68343
-31.84651 -30.19234 -28.71143 -27.48298 -27.16151 -27.02490 -24.55312 -23.73234
-23.00110 -22.59267 -21.93848 -21.52408 -19.98168 -19.29020 -18.69426 -17.73901
-17.32770 -17.22814 -17.04006 -16.44874 -16.32702 -15.79448 -15.78428 -15.49167
-15.29478 -14.95209 -14.91609 -14.75659 -14.34280 -14.23471 -13.95601 -13.73254
-13.63682 -13.40554 -13.32117 -13.24821 -13.10216 -12.95155 -12.57120 -12.44303
-12.39709 -12.20023 -12.08759 -12.00658 -11.79751 -11.67381 -11.48953 -11.38414
-11.35705 -11.30023 -11.25310 -11.10762 -10.98397 -10.60656 -9.73843 -9.20541
-8.82903 -8.14839 -5.48086 1.33154 1.43407 1.50570 1.53163 1.82625
2.44716 2.91556 3.02562 3.21638 3.36901 3.56142 3.62593 3.67490
3.79480 3.94230 3.99657 4.08069 4.11561 4.13781 4.20265 4.25933
4.32418 4.39422 4.40850 4.47931 4.53997 4.56967 4.60199 4.65053
4.70345 4.72448 4.78589 4.84531 4.85104 4.92783 4.97389 5.01719
5.02974 5.03350 5.04115 5.06764 5.12042 5.15688 5.20434 5.21675
5.29214 5.33903 5.37676 5.46216 5.48896 5.90426 5.90877 6.07712
6.15728 6.76663 6.95528 7.06367 7.65177 8.06392 9.05352
Molecular weight = 347.23amu
Principal moments of inertia in cm(-1)
A = 0.022977 B = 0.002798 C = 0.002707
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.331017 B =10005.454699 C =10342.713409
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.961 5.961
2 C -0.037 4.037
3 Si 0.949 3.051
4 H -0.276 1.276
5 H -0.316 1.316
6 H -0.254 1.254
7 C -0.243 4.243
8 H 0.048 0.952
9 N -0.617 5.617
10 C 0.121 3.879
11 C -0.128 4.128
12 C -0.072 4.072
13 C -0.098 4.098
14 C 0.114 3.886
15 N -0.635 5.635
16 C 0.510 3.490
17 O -0.582 6.582
18 C 0.073 3.927
19 H 0.121 0.879
20 C -0.102 4.102
21 C -0.121 4.121
22 C -0.101 4.101
23 C 0.029 3.971
24 H 0.064 0.936
25 C -0.112 4.112
26 C -0.114 4.114
27 C 0.030 3.970
28 N -0.491 5.491
29 C 0.116 3.884
30 C 0.164 3.836
31 H 0.260 0.740
32 H 0.042 0.958
33 H 0.042 0.958
34 H 0.079 0.921
35 H 0.037 0.963
36 H 0.090 0.910
37 H 0.063 0.937
38 H 0.043 0.957
39 H 0.071 0.929
40 H 0.098 0.902
41 H 0.089 0.911
42 H 0.087 0.913
43 H 0.033 0.967
44 H 0.082 0.918
45 H 0.065 0.935
46 H 0.082 0.918
47 H 0.059 0.941
48 H 0.085 0.915
49 H 0.062 0.938
50 H 0.087 0.913
51 H 0.031 0.969
52 H 0.106 0.894
53 H 0.115 0.885
54 H 0.059 0.941
55 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.761 -12.789 -5.525 28.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.608 5.608
2 C -0.231 4.231
3 Si 0.778 3.222
4 H -0.203 1.203
5 H -0.245 1.245
6 H -0.178 1.178
7 C -0.373 4.373
8 H 0.065 0.935
9 N -0.341 5.341
10 C -0.004 4.004
11 C -0.168 4.168
12 C -0.110 4.110
13 C -0.100 4.100
14 C -0.009 4.009
15 N -0.369 5.369
16 C 0.301 3.699
17 O -0.463 6.463
18 C -0.040 4.040
19 H 0.138 0.862
20 C -0.140 4.140
21 C -0.159 4.159
22 C -0.139 4.139
23 C -0.079 4.079
24 H 0.082 0.918
25 C -0.150 4.150
26 C -0.152 4.152
27 C -0.098 4.098
28 N -0.214 5.214
29 C -0.006 4.006
30 C 0.039 3.961
31 H 0.069 0.931
32 H 0.060 0.940
33 H 0.060 0.940
34 H 0.097 0.903
35 H 0.056 0.944
36 H 0.108 0.892
37 H 0.081 0.919
38 H 0.062 0.938
39 H 0.090 0.910
40 H 0.117 0.883
41 H 0.107 0.893
42 H 0.105 0.895
43 H 0.052 0.948
44 H 0.100 0.900
45 H 0.084 0.916
46 H 0.101 0.899
47 H 0.078 0.922
48 H 0.104 0.896
49 H 0.081 0.919
50 H 0.105 0.895
51 H 0.050 0.950
52 H 0.124 0.876
53 H 0.133 0.867
54 H 0.078 0.922
55 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 24.905 -13.296 -5.973 28.857
hybrid contribution -2.209 1.021 -0.150 2.438
sum 22.696 -12.274 -6.123 26.519
Atomic orbital electron populations
1.69983 1.07685 1.27168 1.55928 1.25988 0.95758 1.01244 1.00151
0.85870 0.78824 0.79867 0.77616 1.20312 1.24499 1.17750 1.18783
0.86589 0.93095 1.38814 0.93450 1.44429 1.06974 1.37998 1.44746
1.21382 0.96766 0.92279 0.89988 1.21912 0.98136 0.98973 0.97736
1.21017 0.96949 0.96045 0.96960 1.22222 0.96440 0.93679 0.97684
1.22859 0.88723 0.89553 0.99779 1.49998 1.18544 1.35242 1.33138
1.22237 0.90317 0.76965 0.80407 1.90570 1.61615 1.59938 1.34204
1.21912 0.88780 0.94640 0.98710 0.86175 1.21713 0.98885 0.95565
0.97791 1.21604 1.01421 0.98126 0.94752 1.21503 0.98622 0.95142
0.98608 1.23009 0.99787 0.96049 0.89016 0.91805 1.22101 1.02013
0.93862 0.97055 1.22458 1.01397 0.97798 0.93566 1.22978 0.95582
0.92184 0.99043 1.64400 1.49837 1.04314 1.02823 1.23380 1.00675
0.86781 0.89733 1.20938 0.91638 0.90944 0.92603 0.93127 0.94025
0.93992 0.90255 0.94391 0.89166 0.91886 0.93788 0.91038 0.88338
0.89263 0.89461 0.94785 0.89976 0.91612 0.89908 0.92179 0.89648
0.91944 0.89495 0.95038 0.87557 0.86715 0.92199 0.92713
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -60.48 13.97 21.65 0.30 -60.18 16
2 C -0.04 -2.13 5.23 84.86 0.44 -1.68 16
3 Si 0.95 45.52 24.42 68.60 1.68 47.19 16
4 H -0.28 -12.60 6.51 99.48 0.65 -11.95 16
5 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16
6 H -0.25 -11.27 6.91 99.48 0.69 -10.59 16
7 C -0.24 -13.33 10.03 84.03 0.84 -12.49 16
8 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16
9 N -0.62 -26.87 2.74 -699.70 -1.92 -28.78 16
10 C 0.12 4.76 4.17 86.35 0.36 5.12 16
11 C -0.13 -4.10 6.02 30.72 0.19 -3.91 16
12 C -0.07 -1.80 5.10 30.50 0.16 -1.64 16
13 C -0.10 -2.56 0.95 -52.42 -0.05 -2.61 16
14 C 0.11 3.58 7.65 83.32 0.64 4.22 16
15 N -0.64 -16.13 3.41 -857.51 -2.92 -19.05 16
16 C 0.51 13.88 5.89 87.66 0.52 14.40 16
17 O -0.58 -20.79 12.28 -3.03 -0.04 -20.82 16
18 C 0.07 1.42 2.96 44.61 0.13 1.55 16
19 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16
20 C -0.10 -1.46 5.46 30.74 0.17 -1.29 16
21 C -0.12 -2.02 5.66 30.76 0.17 -1.85 16
22 C -0.10 -1.78 5.64 30.57 0.17 -1.61 16
23 C 0.03 0.65 2.18 44.40 0.10 0.75 16
24 H 0.06 1.97 4.78 -5.65 -0.03 1.94 16
25 C -0.11 -2.17 6.65 31.36 0.21 -1.96 16
26 C -0.11 -2.14 7.05 32.02 0.23 -1.91 16
27 C 0.03 0.66 6.41 87.02 0.56 1.22 16
28 N -0.49 -10.29 4.81 -843.37 -4.06 -14.35 16
29 C 0.12 2.13 7.17 83.41 0.60 2.73 16
30 C 0.16 5.34 5.76 86.15 0.50 5.84 16
31 H 0.26 15.61 8.31 -92.71 -0.77 14.83 16
32 H 0.04 1.52 7.31 -2.39 -0.02 1.50 16
33 H 0.04 1.91 4.55 -2.39 -0.01 1.90 16
34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
35 H 0.04 1.39 7.47 -2.39 -0.02 1.38 16
36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
37 H 0.06 1.51 7.76 -2.39 -0.02 1.49 16
38 H 0.04 1.63 7.46 -2.39 -0.02 1.61 16
39 H 0.07 2.40 7.97 -2.39 -0.02 2.38 16
40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16
41 H 0.09 1.04 4.96 -2.39 -0.01 1.03 16
42 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16
43 H 0.03 0.74 7.42 -2.39 -0.02 0.72 16
44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
46 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16
47 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16
48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
50 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
51 H 0.03 0.90 6.00 -2.39 -0.01 0.89 16
52 H 0.11 1.64 8.10 -2.38 -0.02 1.63 16
53 H 0.12 1.39 5.55 -2.39 -0.01 1.38 16
54 H 0.06 2.02 7.76 -2.39 -0.02 2.00 16
55 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
Total: -1.00 -72.28 391.31 -0.26 -72.55
By element:
Atomic # 1 Polarization: 17.81 SS G_CDS: 0.77 Total: 18.59 kcal
Atomic # 6 Polarization: -1.06 SS G_CDS: 5.92 Total: 4.86 kcal
Atomic # 7 Polarization: -113.77 SS G_CDS: -8.59 Total: -122.37 kcal
Atomic # 8 Polarization: -20.79 SS G_CDS: -0.04 Total: -20.82 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 1.68 Total: 47.19 kcal
Total: -72.28 -0.26 -72.55 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000982063801.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.836 kcal
(2) G-P(sol) polarization free energy of solvation -72.283 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.290 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.42 seconds