Wall clock time and date at job start Wed Apr 1 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.53001 * 109.47121 * 64.30696 * 13 12 11 15 15 C 1.52995 * 109.47213 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47217 * 59.99769 * 15 14 13 17 17 N 1.46502 * 109.46983 * 59.99876 * 16 15 14 18 18 C 1.34777 * 119.99753 * 85.00233 * 17 16 15 19 19 O 1.21619 * 120.00142 * 0.02562 * 18 17 16 20 20 C 1.47100 * 120.00064 * 179.97438 * 18 17 16 21 21 C 1.32994 * 120.00193 * 179.97438 * 20 18 17 22 22 C 1.51403 * 136.31605 * 359.62544 * 21 20 18 23 23 C 1.53370 * 87.51995 * 206.05911 * 22 21 20 24 24 C 1.51402 * 136.31591 * 180.02562 * 21 20 18 25 25 C 1.53001 * 109.47218 * 300.00228 * 16 15 14 26 26 C 1.52995 * 109.47213 * 59.99769 * 25 16 15 27 27 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 28 28 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 29 29 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 31 31 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 32 32 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 33 33 H 1.09005 * 109.44264 * 173.95995 * 11 10 9 34 34 H 1.09007 * 109.46608 * 184.30370 * 13 12 11 35 35 H 1.09005 * 109.46725 * 299.99729 * 14 13 12 36 36 H 1.08998 * 109.47163 * 59.99615 * 14 13 12 37 37 H 1.09005 * 109.47264 * 299.99657 * 15 14 13 38 38 H 1.09005 * 109.47309 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47222 * 180.02562 * 16 15 14 40 40 H 0.96996 * 120.00050 * 265.00067 * 17 16 15 41 41 H 1.08007 * 119.99732 * 0.02562 * 20 18 17 42 42 H 1.08999 * 113.56543 * 320.64796 * 22 21 20 43 43 H 1.09009 * 113.55666 * 91.37513 * 22 21 20 44 44 H 1.08998 * 113.97492 * 220.29442 * 23 22 21 45 45 H 1.09007 * 113.59944 * 88.79831 * 23 22 21 46 46 H 1.08995 * 113.56435 * 268.62603 * 24 21 20 47 47 H 1.09007 * 113.56059 * 39.36320 * 24 21 20 48 48 H 1.09005 * 109.46725 * 299.99782 * 25 16 15 49 49 H 1.08997 * 109.47361 * 180.02562 * 25 16 15 50 50 H 1.09008 * 109.46961 * 180.02562 * 26 25 16 51 51 H 1.08995 * 109.47154 * 60.00400 * 26 25 16 52 52 H 1.09002 * 109.49046 * 303.14169 * 27 12 11 53 53 H 1.08998 * 109.52013 * 183.07630 * 27 12 11 54 54 H 1.08998 * 109.62919 * 350.89226 * 28 9 7 55 55 H 1.09003 * 109.62806 * 111.28045 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 1.9959 -5.3953 -3.7829 15 6 2.0684 -6.4736 -4.8658 16 6 0.7594 -6.4898 -5.6578 17 7 0.5514 -5.1819 -6.2841 18 6 1.1185 -4.9075 -7.4756 19 8 1.8024 -5.7459 -8.0310 20 6 0.9092 -3.5945 -8.1048 21 6 1.4691 -3.3235 -9.2803 22 6 2.3617 -4.0529 -10.2620 23 6 2.8557 -2.6789 -10.7313 24 6 1.5045 -2.1454 -10.2307 25 6 -0.4048 -6.7936 -4.7127 26 6 -0.4773 -5.7153 -3.6297 27 6 2.0050 -4.6199 -1.0153 28 6 1.8270 -3.6607 0.1664 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6890 -2.6165 -0.6952 31 1 0.0878 -1.3412 -1.6703 32 1 1.2904 -3.0196 -2.9943 33 1 -0.4419 -3.4300 -2.9982 34 1 0.9863 -6.6724 -2.3720 35 1 1.8413 -4.4220 -4.2486 36 1 2.9285 -5.3842 -3.2187 37 1 2.2232 -7.4468 -4.3998 38 1 2.8981 -6.2575 -5.5389 39 1 0.8109 -7.2584 -6.4290 40 1 0.0056 -4.5134 -5.8413 41 1 0.3014 -2.8501 -7.6118 42 1 3.1361 -4.6528 -9.7842 43 1 1.8114 -4.6023 -11.0260 44 1 2.9877 -2.6005 -11.8104 45 1 3.7117 -2.3071 -10.1679 46 1 0.7191 -2.1712 -10.9860 47 1 1.5763 -1.1814 -9.7271 48 1 -0.2500 -7.7668 -4.2467 49 1 -1.3373 -6.8056 -5.2769 50 1 -1.3065 -5.9320 -2.9561 51 1 -0.6320 -4.7422 -4.0957 52 1 2.8209 -4.2701 -1.6479 53 1 2.2361 -5.6176 -0.6422 54 1 2.7785 -3.5357 0.6831 55 1 1.0847 -4.0603 0.8574 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996767107.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:39 Heat of formation + Delta-G solvation = 11.531645 kcal Electronic energy + Delta-G solvation = -31972.192512 eV Core-core repulsion = 28009.678876 eV Total energy + Delta-G solvation = -3962.513636 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.49598 -40.38233 -39.32601 -38.21034 -36.10334 -34.15894 -33.00207 -32.06209 -31.72629 -31.34834 -29.75784 -27.51717 -26.70015 -25.03597 -24.61359 -24.45272 -23.43279 -22.50618 -21.94019 -20.81445 -19.79810 -19.27914 -18.56103 -18.04386 -17.23336 -16.90140 -16.65461 -16.46691 -16.10604 -15.81911 -15.55117 -15.43382 -15.30522 -15.28240 -15.12207 -14.79801 -14.71218 -14.30367 -13.93903 -13.37420 -13.35164 -13.26177 -13.16114 -12.96282 -12.91770 -12.83680 -12.67012 -12.59765 -12.38033 -12.23871 -12.03534 -11.98036 -11.93529 -11.80845 -11.51238 -11.48145 -11.42821 -11.20616 -11.00366 -10.68975 -10.57178 -10.29342 -9.88908 -9.12674 -8.64926 -7.87382 -5.31829 0.36968 1.45525 1.47421 1.54528 2.25002 2.32845 2.50268 3.03144 3.27526 3.39335 3.56114 3.69583 3.76666 3.77481 3.80976 3.91205 4.16257 4.17980 4.23073 4.24216 4.35301 4.37725 4.46854 4.50489 4.56639 4.58837 4.61014 4.66407 4.71228 4.73465 4.73831 4.81754 4.85732 4.90381 4.93876 5.00030 5.01314 5.05861 5.10886 5.18671 5.20800 5.23801 5.26923 5.33277 5.37985 5.43573 5.45371 5.59897 5.61088 5.66104 5.71425 6.25406 6.38090 6.38849 6.60037 7.14067 7.28356 7.84991 8.39040 9.18718 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003020 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.821883 B = 9268.517460 C =11498.668995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.266 4.266 8 H 0.063 0.937 9 N -0.614 5.614 10 C 0.185 3.815 11 C 0.052 3.948 12 N -0.532 5.532 13 C 0.088 3.912 14 C -0.140 4.140 15 C -0.116 4.116 16 C 0.148 3.852 17 N -0.711 5.711 18 C 0.546 3.454 19 O -0.583 6.583 20 C -0.220 4.220 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.135 4.135 24 C -0.100 4.100 25 C -0.111 4.111 26 C -0.110 4.110 27 C 0.056 3.944 28 C 0.143 3.857 29 H 0.251 0.749 30 H -0.002 1.002 31 H 0.054 0.946 32 H 0.015 0.985 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.407 0.593 41 H 0.149 0.851 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.121 0.879 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.059 0.941 52 H 0.022 0.978 53 H 0.089 0.911 54 H 0.055 0.945 55 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -12.045 -19.331 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.396 4.396 8 H 0.081 0.919 9 N -0.338 5.338 10 C 0.060 3.940 11 C -0.077 4.077 12 N -0.255 5.255 13 C -0.020 4.020 14 C -0.180 4.180 15 C -0.155 4.155 16 C 0.044 3.956 17 N -0.362 5.362 18 C 0.336 3.664 19 O -0.466 6.466 20 C -0.240 4.240 21 C -0.073 4.073 22 C -0.149 4.149 23 C -0.173 4.173 24 C -0.137 4.137 25 C -0.149 4.149 26 C -0.148 4.148 27 C -0.073 4.073 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.244 0.756 41 H 0.167 0.833 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.139 0.861 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.102 0.898 50 H 0.096 0.904 51 H 0.078 0.922 52 H 0.040 0.960 53 H 0.108 0.892 54 H 0.073 0.927 55 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.397 -12.628 -19.328 23.091 hybrid contribution 0.907 1.710 0.268 1.954 sum 0.510 -10.918 -19.061 21.972 Atomic orbital electron populations 1.70175 1.06513 1.25909 1.55303 1.25747 0.96073 1.01295 1.01282 0.85372 0.77626 0.79409 0.78217 1.20638 1.21693 1.20238 1.19463 0.92761 0.86208 1.41195 0.91923 1.44403 1.34568 1.01996 1.52812 1.20734 0.87638 0.96419 0.89253 1.22667 0.99241 0.89373 0.96431 1.62165 1.33847 1.05468 1.24014 1.21847 0.94555 0.95390 0.90187 1.22074 0.99394 0.99008 0.97476 1.21772 0.97231 0.99796 0.96685 1.20969 0.95230 0.84797 0.94648 1.46026 1.52194 1.17549 1.20462 1.18785 0.78751 0.87914 0.80934 1.90725 1.40982 1.50055 1.64826 1.21763 1.06866 0.97007 0.98378 1.23913 0.90778 0.99240 0.93326 1.22294 0.97995 0.97555 0.97069 1.22716 0.96812 0.95066 1.02673 1.22418 0.98639 0.95815 0.96836 1.21752 0.97499 1.00041 0.95649 1.21610 0.96909 0.99153 0.97145 1.22404 0.90203 0.99497 0.95193 1.21126 0.97200 0.85754 0.94162 0.94018 0.98434 0.92717 0.96666 0.89573 0.89084 0.93417 0.93143 0.89400 0.93956 0.90223 0.75626 0.83306 0.92171 0.87680 0.88310 0.90209 0.86111 0.89580 0.88552 0.89771 0.90421 0.92229 0.96018 0.89244 0.92689 0.96665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 11.16 21.65 0.24 -55.12 16 2 C -0.05 -2.73 4.93 84.86 0.42 -2.31 16 3 Si 0.97 45.14 29.59 68.60 2.03 47.17 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.27 -14.95 9.63 84.03 0.81 -14.14 16 8 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 9 N -0.61 -31.62 3.03 -697.24 -2.11 -33.74 16 10 C 0.19 9.05 5.45 86.50 0.47 9.52 16 11 C 0.05 1.92 4.83 86.54 0.42 2.34 16 12 N -0.53 -17.21 4.65 -869.11 -4.04 -21.26 16 13 C 0.09 2.11 2.29 44.91 0.10 2.21 16 14 C -0.14 -3.48 4.36 30.59 0.13 -3.35 16 15 C -0.12 -2.49 5.60 30.59 0.17 -2.32 16 16 C 0.15 2.87 2.78 44.99 0.13 3.00 16 17 N -0.71 -14.82 4.23 -446.13 -1.89 -16.71 16 18 C 0.55 13.76 7.73 86.57 0.67 14.43 16 19 O -0.58 -18.38 14.82 -4.09 -0.06 -18.44 16 20 C -0.22 -4.64 10.03 23.43 0.23 -4.41 16 21 C -0.07 -1.38 6.93 -17.17 -0.12 -1.50 16 22 C -0.11 -2.10 6.99 30.05 0.21 -1.89 16 23 C -0.14 -1.81 8.17 30.93 0.25 -1.56 16 24 C -0.10 -1.30 7.95 30.15 0.24 -1.06 16 25 C -0.11 -1.67 5.61 30.59 0.17 -1.50 16 26 C -0.11 -2.15 4.68 30.59 0.14 -2.00 16 27 C 0.06 1.93 4.99 86.38 0.43 2.36 16 28 C 0.14 6.13 6.69 86.35 0.58 6.71 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.05 2.99 6.12 -2.39 -0.01 2.98 16 32 H 0.02 0.60 6.79 -2.39 -0.02 0.58 16 33 H 0.09 2.74 5.83 -2.38 -0.01 2.73 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.05 1.36 6.13 -2.38 -0.01 1.34 16 36 H 0.05 1.38 6.57 -2.39 -0.02 1.37 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.08 1.70 7.58 -2.39 -0.02 1.69 16 40 H 0.41 7.46 6.85 -92.71 -0.63 6.83 16 41 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.06 1.44 7.49 -2.39 -0.02 1.42 16 43 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 48 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 51 H 0.06 1.21 4.55 -2.39 -0.01 1.20 16 52 H 0.02 0.79 6.72 -2.39 -0.02 0.77 16 53 H 0.09 2.54 8.11 -2.39 -0.02 2.52 16 54 H 0.05 2.28 7.95 -2.39 -0.02 2.26 16 55 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.21 409.24 -0.13 -70.35 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.24 Total: 23.23 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.46 Total: 4.52 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -7.80 Total: -126.82 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.06 Total: -18.44 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.21 -0.13 -70.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996767107.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.878 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds