Wall clock time and date at job start Wed Apr 1 2020 06:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99708 * 2 1 4 4 H 1.48501 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47374 * 300.00326 * 3 2 1 6 6 H 1.48508 * 109.47173 * 60.00361 * 3 2 1 7 7 C 1.38812 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99732 * 163.07546 * 7 2 1 9 9 N 1.36932 * 120.00339 * 343.07253 * 7 2 1 10 10 C 1.46924 * 120.63058 * 331.83876 * 9 7 2 11 11 C 1.53194 * 108.77296 * 233.58117 * 10 9 7 12 12 C 1.53037 * 109.31413 * 305.36680 * 11 10 9 13 13 C 1.53003 * 109.45811 * 181.38316 * 12 11 10 14 14 N 1.46496 * 115.55167 * 325.55452 * 13 12 11 15 15 C 1.34777 * 120.00142 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99791 * 359.73046 * 15 14 13 17 17 C 1.50696 * 120.00165 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.57667 * 59.47128 * 17 15 14 19 19 C 1.53141 * 109.57973 * 299.07258 * 17 15 14 20 20 N 1.46911 * 109.36883 * 240.18497 * 19 17 15 21 21 C 1.46943 * 111.05349 * 298.00735 * 20 19 17 22 22 C 1.53128 * 109.35547 * 61.96770 * 21 20 19 23 23 C 1.53389 * 109.57907 * 179.72909 * 17 15 14 24 24 C 1.53391 * 108.59741 * 60.84938 * 23 17 15 25 25 C 1.46942 * 111.05885 * 62.00629 * 20 19 17 26 26 C 1.53005 * 117.49537 * 111.22230 * 13 12 11 27 27 C 1.53007 * 117.49703 * 179.88159 * 13 12 11 28 28 C 1.53040 * 109.52881 * 61.37005 * 12 11 10 29 29 C 1.46930 * 120.62884 * 151.81113 * 9 7 2 30 30 H 0.96996 * 120.00252 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.58751 * 113.79692 * 10 9 7 32 32 H 1.08998 * 109.58884 * 353.36756 * 10 9 7 33 33 H 1.09003 * 109.49787 * 185.41154 * 11 10 9 34 34 H 1.09003 * 109.52030 * 65.33791 * 11 10 9 35 35 H 1.08998 * 109.46044 * 301.35422 * 12 11 10 36 36 H 0.96996 * 119.99886 * 0.02562 * 14 13 12 37 37 H 1.08997 * 109.48633 * 0.15379 * 19 17 15 38 38 H 1.09000 * 109.48742 * 120.21539 * 19 17 15 39 39 H 1.08994 * 109.49718 * 301.99657 * 21 20 19 40 40 H 1.09006 * 109.48884 * 181.92643 * 21 20 19 41 41 H 1.08998 * 109.57523 * 240.24240 * 22 21 20 42 42 H 1.08998 * 109.57924 * 119.85590 * 22 21 20 43 43 H 1.09001 * 110.11481 * 299.41536 * 23 17 15 44 44 H 1.09004 * 109.57490 * 178.80961 * 24 23 17 45 45 H 1.08996 * 109.57883 * 299.19910 * 24 23 17 46 46 H 1.09002 * 109.49054 * 58.00459 * 25 20 19 47 47 H 1.08996 * 109.49320 * 178.08539 * 25 20 19 48 48 H 1.08998 * 117.50116 * 214.99941 * 26 13 12 49 49 H 1.09000 * 117.50023 * 0.02999 * 26 13 12 50 50 H 1.08995 * 117.49550 * 359.97438 * 27 13 12 51 51 H 1.08998 * 117.49184 * 144.99919 * 27 13 12 52 52 H 1.09001 * 109.49415 * 58.58069 * 28 12 11 53 53 H 1.08998 * 109.49869 * 178.67773 * 28 12 11 54 54 H 1.08997 * 109.58360 * 246.20246 * 29 9 7 55 55 H 1.08998 * 109.58622 * 6.48420 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0553 -1.2223 -0.2729 9 7 1.3702 -2.3625 0.3442 10 6 0.2263 -2.3410 1.2661 11 6 0.4978 -3.3213 2.4116 12 6 0.8123 -4.7024 1.8321 13 6 1.0502 -5.6922 2.9743 14 7 1.6991 -5.1386 4.1653 15 6 1.9512 -5.9316 5.2256 16 8 1.6362 -7.1025 5.1955 17 6 2.6193 -5.3623 6.4505 18 1 2.0099 -4.5551 6.8570 19 6 4.0041 -4.8256 6.0771 20 7 5.0284 -5.5405 6.8503 21 6 4.8526 -5.3178 8.2921 22 6 3.4919 -5.8681 8.7284 23 6 2.7831 -6.4637 7.5054 24 6 3.6658 -7.5736 6.9207 25 6 5.0218 -6.9758 6.5352 26 6 0.0074 -6.7919 3.1847 27 6 1.3785 -7.1386 2.5988 28 6 2.0677 -4.6179 0.9609 29 6 1.8138 -3.6527 -0.2012 30 1 -0.4850 0.8400 0.0004 31 1 -0.6769 -2.6411 0.7347 32 1 0.0995 -1.3357 1.6677 33 1 -0.3827 -3.3867 3.0508 34 1 1.3474 -2.9704 2.9975 35 1 -0.0279 -5.0419 1.2265 36 1 1.9468 -4.2011 4.1912 37 1 4.1788 -4.9797 5.0123 38 1 4.0546 -3.7607 6.3039 39 1 4.8976 -4.2495 8.5033 40 1 5.6444 -5.8305 8.8385 41 1 2.8879 -5.0614 9.1437 42 1 3.6357 -6.6436 9.4807 43 1 1.8076 -6.8565 7.7919 44 1 3.8102 -8.3560 7.6659 45 1 3.1869 -7.9932 6.0360 46 1 5.1900 -7.1144 5.4672 47 1 5.8120 -7.4749 7.0960 48 1 -0.1957 -7.1036 4.2093 49 1 -0.8478 -6.8105 2.5091 50 1 1.4245 -7.3851 1.5380 51 1 2.0773 -7.6782 3.2379 52 1 2.9025 -4.2546 1.5602 53 1 2.3046 -5.6064 0.5675 54 1 1.0401 -4.0596 -0.8521 55 1 2.7331 -3.5123 -0.7699 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000155519.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:46 Heat of formation + Delta-G solvation = 2.051420 kcal Electronic energy + Delta-G solvation = -32979.657979 eV Core-core repulsion = 29016.733250 eV Total energy + Delta-G solvation = -3962.924729 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.41005 -40.88392 -39.16641 -37.35920 -34.56999 -34.39940 -33.14345 -32.22387 -31.84491 -31.79072 -31.31835 -27.40585 -25.38484 -24.38746 -24.01476 -24.00180 -23.80894 -22.96728 -21.93402 -21.19004 -20.17875 -18.93501 -18.62764 -18.24511 -17.47389 -17.25355 -16.87106 -16.53879 -16.46089 -15.69237 -15.61217 -15.31348 -15.00587 -14.89596 -14.63403 -14.45804 -14.22227 -13.96086 -13.89392 -13.81705 -13.23845 -13.15143 -13.13242 -13.05745 -13.04616 -12.94523 -12.60981 -12.52370 -12.48079 -12.30534 -12.09936 -11.97772 -11.92751 -11.85757 -11.76142 -11.48438 -11.34271 -11.11829 -11.08920 -10.89357 -10.52107 -10.34164 -9.53053 -9.19004 -8.64933 -7.85126 -5.30195 1.47449 1.50196 1.58068 1.60151 2.09962 2.53354 2.97425 3.01611 3.29146 3.43912 3.56366 3.61411 3.73250 3.79558 3.87648 4.01997 4.03368 4.08604 4.21028 4.22357 4.27481 4.34363 4.36210 4.40395 4.48341 4.50170 4.53958 4.62466 4.70651 4.75657 4.81543 4.82138 4.94392 4.95862 4.99154 5.02792 5.07241 5.08329 5.14669 5.18520 5.19816 5.21030 5.24961 5.27180 5.36315 5.39312 5.42219 5.55182 5.66648 5.68325 5.79316 6.06869 6.13518 6.41999 6.57289 7.18078 7.26089 7.89522 8.40967 9.21099 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.003037 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.346636 B = 9218.733119 C =10481.756743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.117 4.117 12 C -0.033 4.033 13 C 0.112 3.888 14 N -0.686 5.686 15 C 0.518 3.482 16 O -0.556 6.556 17 C -0.134 4.134 18 H 0.112 0.888 19 C 0.063 3.937 20 N -0.535 5.535 21 C 0.050 3.950 22 C -0.144 4.144 23 C -0.064 4.064 24 C -0.154 4.154 25 C 0.054 3.946 26 C -0.177 4.177 27 C -0.169 4.169 28 C -0.109 4.109 29 C 0.140 3.860 30 H 0.249 0.751 31 H -0.007 1.007 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.093 0.907 52 H 0.055 0.945 53 H 0.076 0.924 54 H 0.012 0.988 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -13.765 17.211 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.156 4.156 12 C -0.052 4.052 13 C 0.024 3.976 14 N -0.337 5.337 15 C 0.306 3.694 16 O -0.435 6.435 17 C -0.157 4.157 18 H 0.130 0.870 19 C -0.066 4.066 20 N -0.254 5.254 21 C -0.078 4.078 22 C -0.183 4.183 23 C -0.084 4.084 24 C -0.193 4.193 25 C -0.074 4.074 26 C -0.215 4.215 27 C -0.207 4.207 28 C -0.148 4.148 29 C 0.015 3.985 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.111 0.889 52 H 0.074 0.926 53 H 0.094 0.906 54 H 0.030 0.970 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.295 -14.237 17.036 23.369 hybrid contribution -0.883 1.069 -0.220 1.403 sum 6.412 -13.168 16.816 22.300 Atomic orbital electron populations 1.70188 1.06624 1.25680 1.55630 1.25755 0.95974 1.01348 1.01404 0.85265 0.78713 0.80105 0.76712 1.19088 1.22270 1.21567 1.19532 0.92772 0.86000 1.40635 0.91694 1.44323 1.35924 1.02254 1.50758 1.20562 0.87627 0.97585 0.88957 1.21965 1.00653 0.94788 0.98198 1.20611 0.98412 0.93044 0.93113 1.20682 1.00511 0.88875 0.87534 1.45459 1.60290 1.13734 1.14181 1.20916 0.78004 0.86133 0.84374 1.90579 1.52910 1.17547 1.82468 1.22136 0.99432 1.00541 0.93609 0.86965 1.22241 0.86422 0.99468 0.98496 1.62513 1.45892 1.09930 1.07103 1.22318 0.96223 1.02193 0.87058 1.22265 0.97734 1.01457 0.96812 1.20864 0.99199 0.94248 0.94078 1.22376 0.96665 0.98158 1.02141 1.22188 0.96596 0.87628 1.00982 1.23393 0.93217 1.02340 1.02566 1.23286 0.99141 0.97013 1.01250 1.21869 0.96850 0.99064 0.97008 1.21060 0.97168 0.86118 0.94199 0.94196 0.98884 0.92738 0.91811 0.92280 0.90676 0.75208 0.91288 0.88234 0.89582 0.89711 0.90592 0.90556 0.91196 0.91472 0.91183 0.92136 0.89621 0.88920 0.88297 0.87985 0.88880 0.92595 0.90591 0.97010 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 11.20 21.65 0.24 -54.14 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.96 43.96 29.59 68.60 2.03 45.99 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.26 -13.90 9.58 84.03 0.81 -13.10 16 8 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -29.49 2.99 -699.10 -2.09 -31.58 16 10 C 0.18 8.22 5.30 86.36 0.46 8.68 16 11 C -0.12 -3.98 4.83 30.67 0.15 -3.83 16 12 C -0.03 -0.98 2.28 -10.77 -0.02 -1.00 16 13 C 0.11 2.94 2.48 3.61 0.01 2.95 16 14 N -0.69 -16.44 5.16 -422.91 -2.18 -18.62 16 15 C 0.52 12.28 6.29 87.66 0.55 12.83 16 16 O -0.56 -15.82 9.21 -3.04 -0.03 -15.84 16 17 C -0.13 -2.45 2.60 -11.36 -0.03 -2.48 16 18 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 19 C 0.06 1.11 5.63 86.35 0.49 1.60 16 20 N -0.53 -9.31 5.22 -895.16 -4.67 -13.99 16 21 C 0.05 0.66 6.09 86.34 0.53 1.19 16 22 C -0.14 -1.88 5.75 30.77 0.18 -1.70 16 23 C -0.06 -1.15 2.59 -10.40 -0.03 -1.17 16 24 C -0.15 -2.99 5.43 30.77 0.17 -2.82 16 25 C 0.05 0.98 6.09 86.34 0.53 1.51 16 26 C -0.18 -4.67 9.37 30.62 0.29 -4.38 16 27 C -0.17 -4.36 8.91 30.62 0.27 -4.09 16 28 C -0.11 -3.41 5.22 30.67 0.16 -3.25 16 29 C 0.14 5.58 6.52 86.36 0.56 6.14 16 30 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 31 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 32 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.93 6.50 -2.39 -0.02 1.92 16 35 H 0.07 2.33 7.90 -2.39 -0.02 2.31 16 36 H 0.41 9.25 6.59 -92.71 -0.61 8.64 16 37 H 0.07 1.42 7.48 -2.39 -0.02 1.40 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.74 5.56 -2.39 -0.01 1.73 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.09 2.71 6.37 -2.39 -0.02 2.69 16 49 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 50 H 0.10 2.40 7.60 -2.39 -0.02 2.39 16 51 H 0.09 2.66 6.39 -2.39 -0.02 2.65 16 52 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.08 2.05 7.25 -2.39 -0.02 2.03 16 54 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 55 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 Total: -1.00 -62.97 398.41 -0.97 -63.94 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.26 Total: 29.45 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.47 Total: -5.21 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -8.71 Total: -118.33 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.03 Total: -15.84 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.97 -0.97 -63.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000155519.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.989 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds