Wall clock time and date at job start Wed Apr 1 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00063 * 2 1 4 4 H 1.48497 * 109.47238 * 269.99980 * 3 2 1 5 5 H 1.48507 * 109.47168 * 30.00185 * 3 2 1 6 6 H 1.48508 * 109.46943 * 149.99546 * 3 2 1 7 7 C 1.38813 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99413 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00047 * 359.72435 * 7 2 1 10 10 C 1.47426 * 125.64827 * 345.66206 * 9 7 2 11 11 C 1.54690 * 104.93942 * 204.06830 * 10 9 7 12 12 C 1.55157 * 101.67740 * 323.27638 * 11 10 9 13 13 C 1.47022 * 125.64951 * 165.96075 * 9 7 2 14 14 H 1.08995 * 109.88223 * 59.33342 * 13 9 7 15 15 C 1.53007 * 109.88386 * 298.32829 * 13 9 7 16 16 C 1.53048 * 109.45536 * 302.25387 * 15 13 9 17 17 C 1.53190 * 109.30881 * 178.61490 * 16 15 13 18 18 N 1.46923 * 108.77770 * 54.63576 * 17 16 15 19 19 C 1.34776 * 120.63251 * 126.40943 * 18 17 16 20 20 O 1.21278 * 119.99919 * 4.98049 * 19 18 17 21 21 C 1.50702 * 119.99931 * 184.97711 * 19 18 17 22 22 C 1.56242 * 116.69116 * 59.91376 * 21 19 18 23 23 C 1.56952 * 102.16211 * 159.28538 * 22 21 19 24 24 N 1.49517 * 105.47148 * 1.12716 * 23 22 21 25 25 C 1.49516 * 105.92388 * 70.93892 * 24 23 22 26 26 C 1.54661 * 105.28520 * 288.73474 * 25 24 23 27 27 C 1.50466 * 102.03104 * 324.52630 * 24 23 22 28 28 C 1.46933 * 118.73807 * 306.39166 * 18 17 16 29 29 C 1.53035 * 109.45877 * 182.18995 * 15 13 9 30 30 H 0.97001 * 119.99548 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36597 * 322.99287 * 10 9 7 32 32 H 1.09001 * 110.37262 * 85.32361 * 10 9 7 33 33 H 1.08998 * 111.10491 * 205.10513 * 11 10 9 34 34 H 1.09006 * 110.81604 * 81.31938 * 11 10 9 35 35 H 1.08999 * 110.71732 * 276.96815 * 12 11 10 36 36 H 1.09004 * 110.87318 * 153.76990 * 12 11 10 37 37 H 1.08996 * 109.45988 * 62.20929 * 15 13 9 38 38 H 1.08994 * 109.49650 * 298.56452 * 16 15 13 39 39 H 1.09000 * 109.49289 * 58.66575 * 16 15 13 40 40 H 1.09003 * 109.59224 * 294.84674 * 17 16 15 41 41 H 1.08999 * 109.70305 * 174.49280 * 17 16 15 42 42 H 1.08999 * 110.66567 * 277.38505 * 22 21 19 43 43 H 1.08999 * 110.67122 * 40.51718 * 22 21 19 44 44 H 1.08994 * 110.45970 * 241.96468 * 23 22 21 45 45 H 1.09004 * 109.91845 * 119.99696 * 23 22 21 46 46 H 1.09006 * 110.27636 * 169.78863 * 25 24 23 47 47 H 1.08993 * 110.36086 * 47.73254 * 25 24 23 48 48 H 1.08995 * 110.67240 * 240.91039 * 26 25 24 49 49 H 1.09003 * 110.65976 * 117.77441 * 26 25 24 50 50 H 1.08998 * 112.70041 * 297.53993 * 27 24 23 51 51 H 1.09009 * 111.11809 * 171.34130 * 27 24 23 52 52 H 1.08997 * 109.58330 * 293.81535 * 28 18 17 53 53 H 1.09004 * 109.58299 * 173.39672 * 28 18 17 54 54 H 1.09003 * 109.49568 * 301.33109 * 29 15 13 55 55 H 1.08998 * 109.50310 * 61.42829 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0068 10 6 -0.1080 -2.5509 0.3099 11 6 -0.2506 -4.0149 0.7885 12 6 0.7654 -4.7456 -0.1288 13 6 1.8996 -3.7105 -0.2817 14 1 2.7012 -3.9285 0.4239 15 6 2.4429 -3.7412 -1.7117 16 6 1.3172 -3.4037 -2.6921 17 6 1.8726 -3.4015 -4.1198 18 7 2.5278 -4.6917 -4.3743 19 6 2.1862 -5.4359 -5.4448 20 8 1.3970 -5.0029 -6.2575 21 6 2.7850 -6.8062 -5.6318 22 6 2.5176 -7.8494 -4.4999 23 6 2.7723 -9.2109 -5.2382 24 7 3.1670 -8.8410 -6.6321 25 6 4.5349 -8.2466 -6.5270 26 6 4.3313 -6.8730 -5.8459 27 6 2.3159 -7.6267 -6.8873 28 6 3.5627 -5.1550 -3.4399 29 6 2.9884 -5.1375 -2.0198 30 1 -0.4849 0.8401 -0.0004 31 1 -0.4094 -1.8623 1.0992 32 1 -0.7063 -2.3873 -0.5864 33 1 -1.2624 -4.3850 0.6235 34 1 0.0319 -4.1089 1.8371 35 1 0.3174 -4.9727 -1.0962 36 1 1.1342 -5.6544 0.3467 37 1 3.2434 -3.0083 -1.8119 38 1 0.5274 -4.1502 -2.6101 39 1 0.9135 -2.4188 -2.4572 40 1 2.5983 -2.5954 -4.2284 41 1 1.0587 -3.2585 -4.8305 42 1 3.2217 -7.7151 -3.6788 43 1 1.4903 -7.7753 -4.1433 44 1 1.8643 -9.8136 -5.2498 45 1 3.5806 -9.7536 -4.7480 46 1 4.9672 -8.1159 -7.5191 47 1 5.1777 -8.8799 -5.9157 48 1 4.6646 -6.0665 -6.4990 49 1 4.8540 -6.8365 -4.8901 50 1 1.2488 -7.8465 -6.8540 51 1 2.5974 -7.1389 -7.8206 52 1 4.4262 -4.4920 -3.4931 53 1 3.8623 -6.1701 -3.7005 54 1 3.7741 -5.3867 -1.3066 55 1 2.1828 -5.8678 -1.9442 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004603833.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:08 Heat of formation + Delta-G solvation = 0.791681 kcal Electronic energy + Delta-G solvation = -33308.988794 eV Core-core repulsion = 29346.009439 eV Total energy + Delta-G solvation = -3962.979356 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.36232 -40.70642 -39.59684 -37.74464 -34.75132 -33.84170 -32.67608 -31.50373 -31.30691 -30.96870 -29.25751 -28.93577 -26.57584 -25.58928 -24.37371 -23.49784 -23.16339 -22.23501 -21.79563 -21.31816 -20.39245 -19.38384 -18.54671 -17.69047 -17.29784 -17.10381 -16.84099 -16.47978 -16.33492 -15.92134 -15.72437 -15.49711 -15.26426 -14.65587 -14.49709 -14.24781 -13.98741 -13.89046 -13.73733 -13.69705 -13.47313 -13.28781 -13.14517 -12.99357 -12.82758 -12.78784 -12.69003 -12.61351 -12.38616 -12.24382 -12.15593 -12.03022 -11.88433 -11.76022 -11.61148 -11.48873 -11.24932 -11.20732 -11.14639 -10.91810 -10.77944 -10.61780 -10.00369 -9.69222 -8.71238 -7.81493 -5.15642 1.44995 1.45638 1.46458 1.53609 1.90938 2.51449 2.80891 3.34469 3.38205 3.46496 3.61360 3.66079 3.84908 3.89480 3.95821 4.02025 4.04568 4.14619 4.21090 4.23127 4.27996 4.34076 4.34780 4.38374 4.44320 4.52200 4.53257 4.63595 4.67477 4.72159 4.76454 4.80906 4.85655 4.88272 4.89814 4.97245 5.01351 5.05045 5.07351 5.10501 5.16393 5.18103 5.22868 5.26229 5.29272 5.49432 5.54143 5.57164 5.66250 5.70115 5.71430 5.73078 5.82793 6.30380 6.40094 7.08073 7.16407 7.86829 8.54498 9.29834 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.002956 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.066309 B = 9470.874411 C =10066.628656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.964 3.036 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.158 3.842 14 H 0.036 0.964 15 C -0.083 4.083 16 C -0.100 4.100 17 C 0.119 3.881 18 N -0.597 5.597 19 C 0.544 3.456 20 O -0.589 6.589 21 C -0.133 4.133 22 C -0.131 4.131 23 C 0.016 3.984 24 N -0.475 5.475 25 C 0.016 3.984 26 C -0.133 4.133 27 C 0.039 3.961 28 C 0.097 3.903 29 C -0.120 4.120 30 H 0.243 0.757 31 H 0.027 0.973 32 H -0.010 1.010 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.066 0.934 49 H 0.103 0.897 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.074 0.926 53 H 0.120 0.880 54 H 0.097 0.903 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.752 -21.495 -7.538 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.793 3.207 4 H -0.218 1.218 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.178 4.178 12 C -0.151 4.151 13 C 0.052 3.948 14 H 0.054 0.946 15 C -0.103 4.103 16 C -0.138 4.138 17 C -0.004 4.004 18 N -0.328 5.328 19 C 0.333 3.667 20 O -0.469 6.469 21 C -0.137 4.137 22 C -0.169 4.169 23 C -0.113 4.113 24 N -0.195 5.195 25 C -0.113 4.113 26 C -0.172 4.172 27 C -0.090 4.090 28 C -0.024 4.024 29 C -0.158 4.158 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.008 0.992 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.122 0.878 48 H 0.085 0.915 49 H 0.121 0.879 50 H 0.098 0.902 51 H 0.097 0.903 52 H 0.093 0.907 53 H 0.137 0.863 54 H 0.115 0.885 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.293 -21.651 -8.427 25.411 hybrid contribution -0.284 2.874 0.540 2.938 sum 10.009 -18.777 -7.887 22.693 Atomic orbital electron populations 1.70150 1.06225 1.24815 1.58510 1.25555 0.96301 1.00576 1.03152 0.85292 0.77938 0.80247 0.77191 1.21821 1.22666 1.19318 1.19215 0.90546 0.83550 1.41719 0.90616 1.44695 1.06081 1.02164 1.80358 1.21086 0.84998 0.92645 0.95824 1.22849 0.99452 0.96218 0.99259 1.22613 0.95496 0.97446 0.99524 1.21195 0.94812 0.85250 0.93550 0.94634 1.21407 0.96500 0.96955 0.95473 1.21608 0.98173 1.01063 0.93003 1.21447 0.97128 0.84829 0.96967 1.48135 1.39267 1.19996 1.25395 1.20119 0.80460 0.86028 0.80103 1.90669 1.37777 1.73710 1.44760 1.23659 0.98577 0.91469 1.00038 1.23766 1.03196 0.93427 0.96559 1.24083 1.03125 0.95909 0.88197 1.69975 1.03202 1.24265 1.22035 1.23681 0.92140 0.93442 1.02029 1.23407 0.91210 0.99529 1.03067 1.24229 0.98841 0.89684 0.96250 1.22348 0.89425 1.02251 0.88418 1.21955 1.01783 0.96049 0.96062 0.94799 0.95491 0.99239 0.90745 0.91876 0.91358 0.88921 0.93388 0.92666 0.93640 0.92073 0.91649 0.87806 0.91518 0.89639 0.87881 0.89648 0.87796 0.91539 0.87875 0.90160 0.90319 0.90744 0.86279 0.88481 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.57 21.65 0.23 -56.58 16 2 C -0.06 -3.51 5.47 84.86 0.46 -3.05 16 3 Si 0.96 45.64 29.55 68.60 2.03 47.67 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.22 -11.80 9.85 84.03 0.83 -10.97 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.61 -29.18 2.27 -668.70 -1.52 -30.69 16 10 C 0.18 8.69 5.40 86.78 0.47 9.15 16 11 C -0.14 -4.94 7.07 31.91 0.23 -4.71 16 12 C -0.11 -3.40 5.22 31.78 0.17 -3.24 16 13 C 0.16 5.68 2.95 45.34 0.13 5.82 16 14 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 15 C -0.08 -2.60 1.91 -10.76 -0.02 -2.62 16 16 C -0.10 -3.58 4.93 30.67 0.15 -3.43 16 17 C 0.12 3.90 6.42 86.36 0.55 4.45 16 18 N -0.60 -15.46 2.97 -818.90 -2.43 -17.89 16 19 C 0.54 14.95 7.19 87.66 0.63 15.58 16 20 O -0.59 -21.58 16.00 -3.02 -0.05 -21.63 16 21 C -0.13 -2.45 0.92 -49.21 -0.05 -2.49 16 22 C -0.13 -1.74 5.55 33.11 0.18 -1.56 16 23 C 0.02 0.18 6.67 87.18 0.58 0.76 16 24 N -0.48 -7.31 6.94 -851.63 -5.91 -13.22 16 25 C 0.02 0.18 6.60 86.36 0.57 0.75 16 26 C -0.13 -1.72 5.30 32.29 0.17 -1.54 16 27 C 0.04 0.78 6.08 87.06 0.53 1.31 16 28 C 0.10 1.77 5.65 86.36 0.49 2.25 16 29 C -0.12 -2.44 5.09 30.67 0.16 -2.28 16 30 H 0.24 14.37 8.31 -92.71 -0.77 13.59 16 31 H 0.03 1.49 6.92 -2.39 -0.02 1.48 16 32 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.07 2.04 5.49 -2.39 -0.01 2.02 16 36 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.05 1.70 8.04 -2.39 -0.02 1.69 16 38 H 0.05 1.95 6.14 -2.39 -0.01 1.94 16 39 H 0.04 2.10 7.52 -2.39 -0.02 2.08 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 2.39 7.03 -2.39 -0.02 2.38 16 42 H 0.10 0.93 6.07 -2.39 -0.01 0.92 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 0.75 7.69 -2.38 -0.02 0.73 16 46 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.10 0.72 7.70 -2.39 -0.02 0.70 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 0.87 6.06 -2.39 -0.01 0.86 16 50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.08 1.70 8.13 -2.38 -0.02 1.68 16 52 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.12 1.45 2.18 -2.39 -0.01 1.45 16 54 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 55 H 0.07 1.45 7.10 -2.39 -0.02 1.43 16 Total: -1.00 -71.01 395.90 -0.55 -71.56 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.87 Total: 16.59 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.24 Total: 4.19 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -9.63 Total: -118.38 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.01 -0.55 -71.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004603833.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.353 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds