Wall clock time and date at job start Wed Apr 1 2020 06:13:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86800 * 120.00063 * 2 1
4 4 H 1.48497 * 109.47238 * 269.99980 * 3 2 1
5 5 H 1.48507 * 109.47168 * 30.00185 * 3 2 1
6 6 H 1.48508 * 109.46943 * 149.99546 * 3 2 1
7 7 C 1.38813 * 119.99790 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99413 * 179.97438 * 7 2 1
9 9 N 1.36933 * 120.00047 * 359.72435 * 7 2 1
10 10 C 1.47426 * 125.64827 * 345.66206 * 9 7 2
11 11 C 1.54690 * 104.93942 * 204.06830 * 10 9 7
12 12 C 1.55157 * 101.67740 * 323.27638 * 11 10 9
13 13 C 1.47022 * 125.64951 * 165.96075 * 9 7 2
14 14 H 1.08995 * 109.88223 * 59.33342 * 13 9 7
15 15 C 1.53007 * 109.88386 * 298.32829 * 13 9 7
16 16 C 1.53048 * 109.45536 * 302.25387 * 15 13 9
17 17 C 1.53190 * 109.30881 * 178.61490 * 16 15 13
18 18 N 1.46923 * 108.77770 * 54.63576 * 17 16 15
19 19 C 1.34776 * 120.63251 * 126.40943 * 18 17 16
20 20 O 1.21278 * 119.99919 * 4.98049 * 19 18 17
21 21 C 1.50702 * 119.99931 * 184.97711 * 19 18 17
22 22 C 1.56242 * 116.69116 * 59.91376 * 21 19 18
23 23 C 1.56952 * 102.16211 * 159.28538 * 22 21 19
24 24 N 1.49517 * 105.47148 * 1.12716 * 23 22 21
25 25 C 1.49516 * 105.92388 * 70.93892 * 24 23 22
26 26 C 1.54661 * 105.28520 * 288.73474 * 25 24 23
27 27 C 1.50466 * 102.03104 * 324.52630 * 24 23 22
28 28 C 1.46933 * 118.73807 * 306.39166 * 18 17 16
29 29 C 1.53035 * 109.45877 * 182.18995 * 15 13 9
30 30 H 0.97001 * 119.99548 * 0.02562 * 1 2 3
31 31 H 1.08997 * 110.36597 * 322.99287 * 10 9 7
32 32 H 1.09001 * 110.37262 * 85.32361 * 10 9 7
33 33 H 1.08998 * 111.10491 * 205.10513 * 11 10 9
34 34 H 1.09006 * 110.81604 * 81.31938 * 11 10 9
35 35 H 1.08999 * 110.71732 * 276.96815 * 12 11 10
36 36 H 1.09004 * 110.87318 * 153.76990 * 12 11 10
37 37 H 1.08996 * 109.45988 * 62.20929 * 15 13 9
38 38 H 1.08994 * 109.49650 * 298.56452 * 16 15 13
39 39 H 1.09000 * 109.49289 * 58.66575 * 16 15 13
40 40 H 1.09003 * 109.59224 * 294.84674 * 17 16 15
41 41 H 1.08999 * 109.70305 * 174.49280 * 17 16 15
42 42 H 1.08999 * 110.66567 * 277.38505 * 22 21 19
43 43 H 1.08999 * 110.67122 * 40.51718 * 22 21 19
44 44 H 1.08994 * 110.45970 * 241.96468 * 23 22 21
45 45 H 1.09004 * 109.91845 * 119.99696 * 23 22 21
46 46 H 1.09006 * 110.27636 * 169.78863 * 25 24 23
47 47 H 1.08993 * 110.36086 * 47.73254 * 25 24 23
48 48 H 1.08995 * 110.67240 * 240.91039 * 26 25 24
49 49 H 1.09003 * 110.65976 * 117.77441 * 26 25 24
50 50 H 1.08998 * 112.70041 * 297.53993 * 27 24 23
51 51 H 1.09009 * 111.11809 * 171.34130 * 27 24 23
52 52 H 1.08997 * 109.58330 * 293.81535 * 28 18 17
53 53 H 1.09004 * 109.58299 * 173.39672 * 28 18 17
54 54 H 1.09003 * 109.49568 * 301.33109 * 29 15 13
55 55 H 1.08998 * 109.50310 * 61.42829 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0464 -1.4000
5 1 1.4477 2.6527 0.7001
6 1 3.5478 1.4401 0.7002
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2021 0.0001
9 7 1.3256 -2.3880 0.0068
10 6 -0.1080 -2.5509 0.3099
11 6 -0.2506 -4.0149 0.7885
12 6 0.7654 -4.7456 -0.1288
13 6 1.8996 -3.7105 -0.2817
14 1 2.7012 -3.9285 0.4239
15 6 2.4429 -3.7412 -1.7117
16 6 1.3172 -3.4037 -2.6921
17 6 1.8726 -3.4015 -4.1198
18 7 2.5278 -4.6917 -4.3743
19 6 2.1862 -5.4359 -5.4448
20 8 1.3970 -5.0029 -6.2575
21 6 2.7850 -6.8062 -5.6318
22 6 2.5176 -7.8494 -4.4999
23 6 2.7723 -9.2109 -5.2382
24 7 3.1670 -8.8410 -6.6321
25 6 4.5349 -8.2466 -6.5270
26 6 4.3313 -6.8730 -5.8459
27 6 2.3159 -7.6267 -6.8873
28 6 3.5627 -5.1550 -3.4399
29 6 2.9884 -5.1375 -2.0198
30 1 -0.4849 0.8401 -0.0004
31 1 -0.4094 -1.8623 1.0992
32 1 -0.7063 -2.3873 -0.5864
33 1 -1.2624 -4.3850 0.6235
34 1 0.0319 -4.1089 1.8371
35 1 0.3174 -4.9727 -1.0962
36 1 1.1342 -5.6544 0.3467
37 1 3.2434 -3.0083 -1.8119
38 1 0.5274 -4.1502 -2.6101
39 1 0.9135 -2.4188 -2.4572
40 1 2.5983 -2.5954 -4.2284
41 1 1.0587 -3.2585 -4.8305
42 1 3.2217 -7.7151 -3.6788
43 1 1.4903 -7.7753 -4.1433
44 1 1.8643 -9.8136 -5.2498
45 1 3.5806 -9.7536 -4.7480
46 1 4.9672 -8.1159 -7.5191
47 1 5.1777 -8.8799 -5.9157
48 1 4.6646 -6.0665 -6.4990
49 1 4.8540 -6.8365 -4.8901
50 1 1.2488 -7.8465 -6.8540
51 1 2.5974 -7.1389 -7.8206
52 1 4.4262 -4.4920 -3.4931
53 1 3.8623 -6.1701 -3.7005
54 1 3.7741 -5.3867 -1.3066
55 1 2.1828 -5.8678 -1.9442
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001004603833.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:13:08
Heat of formation + Delta-G solvation = 0.791681 kcal
Electronic energy + Delta-G solvation = -33308.988794 eV
Core-core repulsion = 29346.009439 eV
Total energy + Delta-G solvation = -3962.979356 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.231 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-42.36232 -40.70642 -39.59684 -37.74464 -34.75132 -33.84170 -32.67608 -31.50373
-31.30691 -30.96870 -29.25751 -28.93577 -26.57584 -25.58928 -24.37371 -23.49784
-23.16339 -22.23501 -21.79563 -21.31816 -20.39245 -19.38384 -18.54671 -17.69047
-17.29784 -17.10381 -16.84099 -16.47978 -16.33492 -15.92134 -15.72437 -15.49711
-15.26426 -14.65587 -14.49709 -14.24781 -13.98741 -13.89046 -13.73733 -13.69705
-13.47313 -13.28781 -13.14517 -12.99357 -12.82758 -12.78784 -12.69003 -12.61351
-12.38616 -12.24382 -12.15593 -12.03022 -11.88433 -11.76022 -11.61148 -11.48873
-11.24932 -11.20732 -11.14639 -10.91810 -10.77944 -10.61780 -10.00369 -9.69222
-8.71238 -7.81493 -5.15642 1.44995 1.45638 1.46458 1.53609 1.90938
2.51449 2.80891 3.34469 3.38205 3.46496 3.61360 3.66079 3.84908
3.89480 3.95821 4.02025 4.04568 4.14619 4.21090 4.23127 4.27996
4.34076 4.34780 4.38374 4.44320 4.52200 4.53257 4.63595 4.67477
4.72159 4.76454 4.80906 4.85655 4.88272 4.89814 4.97245 5.01351
5.05045 5.07351 5.10501 5.16393 5.18103 5.22868 5.26229 5.29272
5.49432 5.54143 5.57164 5.66250 5.70115 5.71430 5.73078 5.82793
6.30380 6.40094 7.08073 7.16407 7.86829 8.54498 9.29834
Molecular weight = 347.23amu
Principal moments of inertia in cm(-1)
A = 0.017773 B = 0.002956 C = 0.002781
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.066309 B = 9470.874411 C =10066.628656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.948 5.948
2 C -0.063 4.063
3 Si 0.964 3.036
4 H -0.291 1.291
5 H -0.300 1.300
6 H -0.268 1.268
7 C -0.221 4.221
8 H 0.076 0.924
9 N -0.609 5.609
10 C 0.180 3.820
11 C -0.139 4.139
12 C -0.113 4.113
13 C 0.158 3.842
14 H 0.036 0.964
15 C -0.083 4.083
16 C -0.100 4.100
17 C 0.119 3.881
18 N -0.597 5.597
19 C 0.544 3.456
20 O -0.589 6.589
21 C -0.133 4.133
22 C -0.131 4.131
23 C 0.016 3.984
24 N -0.475 5.475
25 C 0.016 3.984
26 C -0.133 4.133
27 C 0.039 3.961
28 C 0.097 3.903
29 C -0.120 4.120
30 H 0.243 0.757
31 H 0.027 0.973
32 H -0.010 1.010
33 H 0.074 0.926
34 H 0.062 0.938
35 H 0.068 0.932
36 H 0.092 0.908
37 H 0.048 0.952
38 H 0.055 0.945
39 H 0.045 0.955
40 H 0.061 0.939
41 H 0.065 0.935
42 H 0.104 0.896
43 H 0.066 0.934
44 H 0.085 0.915
45 H 0.103 0.897
46 H 0.085 0.915
47 H 0.104 0.896
48 H 0.066 0.934
49 H 0.103 0.897
50 H 0.080 0.920
51 H 0.078 0.922
52 H 0.074 0.926
53 H 0.120 0.880
54 H 0.097 0.903
55 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.752 -21.495 -7.538 25.188
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.597 5.597
2 C -0.256 4.256
3 Si 0.793 3.207
4 H -0.218 1.218
5 H -0.227 1.227
6 H -0.193 1.193
7 C -0.350 4.350
8 H 0.094 0.906
9 N -0.333 5.333
10 C 0.054 3.946
11 C -0.178 4.178
12 C -0.151 4.151
13 C 0.052 3.948
14 H 0.054 0.946
15 C -0.103 4.103
16 C -0.138 4.138
17 C -0.004 4.004
18 N -0.328 5.328
19 C 0.333 3.667
20 O -0.469 6.469
21 C -0.137 4.137
22 C -0.169 4.169
23 C -0.113 4.113
24 N -0.195 5.195
25 C -0.113 4.113
26 C -0.172 4.172
27 C -0.090 4.090
28 C -0.024 4.024
29 C -0.158 4.158
30 H 0.052 0.948
31 H 0.045 0.955
32 H 0.008 0.992
33 H 0.093 0.907
34 H 0.081 0.919
35 H 0.086 0.914
36 H 0.111 0.889
37 H 0.066 0.934
38 H 0.073 0.927
39 H 0.064 0.936
40 H 0.079 0.921
41 H 0.084 0.916
42 H 0.122 0.878
43 H 0.085 0.915
44 H 0.104 0.896
45 H 0.121 0.879
46 H 0.104 0.896
47 H 0.122 0.878
48 H 0.085 0.915
49 H 0.121 0.879
50 H 0.098 0.902
51 H 0.097 0.903
52 H 0.093 0.907
53 H 0.137 0.863
54 H 0.115 0.885
55 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 10.293 -21.651 -8.427 25.411
hybrid contribution -0.284 2.874 0.540 2.938
sum 10.009 -18.777 -7.887 22.693
Atomic orbital electron populations
1.70150 1.06225 1.24815 1.58510 1.25555 0.96301 1.00576 1.03152
0.85292 0.77938 0.80247 0.77191 1.21821 1.22666 1.19318 1.19215
0.90546 0.83550 1.41719 0.90616 1.44695 1.06081 1.02164 1.80358
1.21086 0.84998 0.92645 0.95824 1.22849 0.99452 0.96218 0.99259
1.22613 0.95496 0.97446 0.99524 1.21195 0.94812 0.85250 0.93550
0.94634 1.21407 0.96500 0.96955 0.95473 1.21608 0.98173 1.01063
0.93003 1.21447 0.97128 0.84829 0.96967 1.48135 1.39267 1.19996
1.25395 1.20119 0.80460 0.86028 0.80103 1.90669 1.37777 1.73710
1.44760 1.23659 0.98577 0.91469 1.00038 1.23766 1.03196 0.93427
0.96559 1.24083 1.03125 0.95909 0.88197 1.69975 1.03202 1.24265
1.22035 1.23681 0.92140 0.93442 1.02029 1.23407 0.91210 0.99529
1.03067 1.24229 0.98841 0.89684 0.96250 1.22348 0.89425 1.02251
0.88418 1.21955 1.01783 0.96049 0.96062 0.94799 0.95491 0.99239
0.90745 0.91876 0.91358 0.88921 0.93388 0.92666 0.93640 0.92073
0.91649 0.87806 0.91518 0.89639 0.87881 0.89648 0.87796 0.91539
0.87875 0.90160 0.90319 0.90744 0.86279 0.88481 0.90661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -56.80 10.57 21.65 0.23 -56.58 16
2 C -0.06 -3.51 5.47 84.86 0.46 -3.05 16
3 Si 0.96 45.64 29.55 68.60 2.03 47.67 16
4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16
6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16
7 C -0.22 -11.80 9.85 84.03 0.83 -10.97 16
8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16
9 N -0.61 -29.18 2.27 -668.70 -1.52 -30.69 16
10 C 0.18 8.69 5.40 86.78 0.47 9.15 16
11 C -0.14 -4.94 7.07 31.91 0.23 -4.71 16
12 C -0.11 -3.40 5.22 31.78 0.17 -3.24 16
13 C 0.16 5.68 2.95 45.34 0.13 5.82 16
14 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16
15 C -0.08 -2.60 1.91 -10.76 -0.02 -2.62 16
16 C -0.10 -3.58 4.93 30.67 0.15 -3.43 16
17 C 0.12 3.90 6.42 86.36 0.55 4.45 16
18 N -0.60 -15.46 2.97 -818.90 -2.43 -17.89 16
19 C 0.54 14.95 7.19 87.66 0.63 15.58 16
20 O -0.59 -21.58 16.00 -3.02 -0.05 -21.63 16
21 C -0.13 -2.45 0.92 -49.21 -0.05 -2.49 16
22 C -0.13 -1.74 5.55 33.11 0.18 -1.56 16
23 C 0.02 0.18 6.67 87.18 0.58 0.76 16
24 N -0.48 -7.31 6.94 -851.63 -5.91 -13.22 16
25 C 0.02 0.18 6.60 86.36 0.57 0.75 16
26 C -0.13 -1.72 5.30 32.29 0.17 -1.54 16
27 C 0.04 0.78 6.08 87.06 0.53 1.31 16
28 C 0.10 1.77 5.65 86.36 0.49 2.25 16
29 C -0.12 -2.44 5.09 30.67 0.16 -2.28 16
30 H 0.24 14.37 8.31 -92.71 -0.77 13.59 16
31 H 0.03 1.49 6.92 -2.39 -0.02 1.48 16
32 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16
33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16
34 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16
35 H 0.07 2.04 5.49 -2.39 -0.01 2.02 16
36 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16
37 H 0.05 1.70 8.04 -2.39 -0.02 1.69 16
38 H 0.05 1.95 6.14 -2.39 -0.01 1.94 16
39 H 0.04 2.10 7.52 -2.39 -0.02 2.08 16
40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
41 H 0.06 2.39 7.03 -2.39 -0.02 2.38 16
42 H 0.10 0.93 6.07 -2.39 -0.01 0.92 16
43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
45 H 0.10 0.75 7.69 -2.38 -0.02 0.73 16
46 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16
47 H 0.10 0.72 7.70 -2.39 -0.02 0.70 16
48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
49 H 0.10 0.87 6.06 -2.39 -0.01 0.86 16
50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
51 H 0.08 1.70 8.13 -2.38 -0.02 1.68 16
52 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
53 H 0.12 1.45 2.18 -2.39 -0.01 1.45 16
54 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
55 H 0.07 1.45 7.10 -2.39 -0.02 1.43 16
Total: -1.00 -71.01 395.90 -0.55 -71.56
By element:
Atomic # 1 Polarization: 15.72 SS G_CDS: 0.87 Total: 16.59 kcal
Atomic # 6 Polarization: -2.05 SS G_CDS: 6.24 Total: 4.19 kcal
Atomic # 7 Polarization: -108.75 SS G_CDS: -9.63 Total: -118.38 kcal
Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal
Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal
Total: -71.01 -0.55 -71.56 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001004603833.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.353 kcal
(2) G-P(sol) polarization free energy of solvation -71.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds