Wall clock time and date at job start Wed Apr 1 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99677 * 2 1 4 4 C 1.46897 * 111.00095 * 123.95099 * 2 1 3 5 5 C 1.53000 * 109.47012 * 170.00220 * 4 2 1 6 6 N 1.46504 * 109.47305 * 180.02562 * 5 4 2 7 7 C 1.35033 * 124.88677 * 124.99899 * 6 5 4 8 8 C 1.35357 * 107.22792 * 180.02562 * 7 6 5 9 9 C 1.41501 * 105.50465 * 0.02562 * 8 7 6 10 10 C 1.47710 * 126.51794 * 179.97438 * 9 8 7 11 11 O 1.21571 * 119.99946 * 353.37020 * 10 9 8 12 12 N 1.34779 * 120.00315 * 173.36969 * 10 9 8 13 13 C 1.47617 * 120.90598 * 182.83831 * 12 10 9 14 14 C 1.53884 * 107.50436 * 132.48771 * 13 12 10 15 15 H 1.08999 * 112.09909 * 182.65959 * 14 13 12 16 16 C 1.54550 * 108.36870 * 307.00753 * 14 13 12 17 17 C 1.54285 * 104.84540 * 89.29624 * 16 14 13 18 18 C 1.54959 * 104.81053 * 359.81355 * 17 16 14 19 19 H 1.08996 * 112.25650 * 146.61020 * 18 17 16 20 20 C 1.47164 * 120.70449 * 3.51729 * 12 10 9 21 21 N 1.48306 * 104.15061 * 24.99087 * 18 17 16 22 22 C 1.36940 * 128.07226 * 139.04436 * 21 18 17 23 23 H 1.08005 * 120.00024 * 194.96668 * 22 21 18 24 24 C 1.38811 * 120.00403 * 14.97066 * 22 21 18 25 25 N 1.31620 * 119.99655 * 9.64640 * 24 22 21 26 26 Si 1.86794 * 120.00297 * 189.64477 * 24 22 21 27 27 H 1.48495 * 109.47299 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.47379 * 300.00128 * 26 24 22 29 29 H 1.48507 * 109.46734 * 60.00266 * 26 24 22 30 30 N 1.28473 * 124.88239 * 305.33376 * 6 5 4 31 31 H 1.08998 * 109.47139 * 296.03983 * 1 2 3 32 32 H 1.08997 * 109.47215 * 56.05062 * 1 2 3 33 33 H 1.09002 * 109.46461 * 176.04632 * 1 2 3 34 34 H 1.08996 * 109.47254 * 183.95601 * 3 2 1 35 35 H 1.09001 * 109.47348 * 303.95244 * 3 2 1 36 36 H 1.09001 * 109.47104 * 63.95204 * 3 2 1 37 37 H 1.09003 * 109.46977 * 50.00514 * 4 2 1 38 38 H 1.09000 * 109.47598 * 290.00475 * 4 2 1 39 39 H 1.09003 * 109.47010 * 60.00314 * 5 4 2 40 40 H 1.09001 * 109.47527 * 300.00146 * 5 4 2 41 41 H 1.08003 * 126.38405 * 0.06494 * 7 6 5 42 42 H 1.08004 * 127.25011 * 179.97438 * 8 7 6 43 43 H 1.09001 * 109.38348 * 13.37245 * 13 12 10 44 44 H 1.08998 * 110.63899 * 252.31797 * 13 12 10 45 45 H 1.09006 * 110.35948 * 208.13674 * 16 14 13 46 46 H 1.08994 * 110.36398 * 330.45517 * 16 14 13 47 47 H 1.09008 * 110.36040 * 118.84487 * 17 16 14 48 48 H 1.08998 * 110.36059 * 241.04741 * 17 16 14 49 49 H 1.09001 * 109.74474 * 107.61496 * 20 12 10 50 50 H 1.08995 * 109.75561 * 346.88250 * 20 12 10 51 51 H 0.97005 * 120.00339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9552 0.9703 6 7 4.0295 -1.7196 2.1045 7 6 4.7433 -2.8612 2.0023 8 6 5.0430 -3.2607 3.2604 9 6 4.4653 -2.2904 4.1131 10 6 4.5132 -2.2773 5.5893 11 8 4.9865 -3.2220 6.1906 12 7 4.0322 -1.2180 6.2699 13 6 4.1262 -1.1562 7.7417 14 6 4.6673 0.2357 8.1129 15 1 4.8108 0.3467 9.1877 16 6 5.9728 0.4776 7.3218 17 6 5.5183 1.1259 5.9977 18 6 3.9750 1.2123 6.1082 19 1 3.5737 2.0919 5.6049 20 6 3.3864 -0.1007 5.5625 21 7 3.7168 1.2355 7.5684 22 6 2.8085 1.9978 8.2533 23 1 2.8858 2.0960 9.3261 24 6 1.7885 2.6443 7.5689 25 7 1.5769 2.3774 6.2976 26 14 0.7162 3.8930 8.4522 27 1 -0.2915 4.4368 7.5067 28 1 0.0241 3.2348 9.5894 29 1 1.5639 5.0004 8.9624 30 7 3.8718 -1.4033 3.3397 31 1 -0.3633 0.4511 0.9233 32 1 -0.3633 0.5739 -0.8524 33 1 -0.3632 -1.0253 -0.0709 34 1 3.0827 1.3433 -0.0709 35 1 1.5898 1.9164 -0.8524 36 1 1.7043 1.8724 0.9233 37 1 1.5091 -1.7406 1.1756 38 1 1.7975 -0.2247 2.0628 39 1 3.9909 0.0195 0.9323 40 1 3.7025 -1.4964 0.0451 41 1 5.0234 -3.3619 1.0873 42 1 5.6042 -4.1361 3.5522 43 1 4.8148 -1.9247 8.0928 44 1 3.1463 -1.3036 8.1958 45 1 6.6286 1.1541 7.8700 46 1 6.4790 -0.4679 7.1271 47 1 5.9507 2.1212 5.8947 48 1 5.8027 0.5001 5.1518 49 1 2.3113 -0.1243 5.7405 50 1 3.5852 -0.1772 4.4936 51 1 0.8638 2.8288 5.8193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029312425.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:15 Heat of formation + Delta-G solvation = 93.477637 kcal Electronic energy + Delta-G solvation = -32690.279092 eV Core-core repulsion = 28627.778557 eV Total energy + Delta-G solvation = -4062.500534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.65069 -41.34500 -39.25678 -38.62811 -35.43015 -34.66640 -34.15377 -32.38589 -31.54139 -31.06140 -30.23427 -28.53973 -28.04241 -26.32356 -25.38621 -25.28046 -23.57402 -22.41302 -21.98865 -21.26198 -20.99519 -20.33507 -18.85821 -18.08886 -17.55351 -17.34956 -16.93035 -16.76741 -16.40535 -16.35241 -15.90285 -15.60199 -15.44284 -15.01694 -14.76254 -14.68796 -14.53892 -14.47734 -14.19506 -13.94402 -13.57895 -13.40501 -13.30184 -13.21826 -12.96799 -12.93226 -12.75043 -12.68750 -12.58748 -12.53539 -12.15025 -12.04339 -11.98413 -11.64786 -11.47206 -11.24047 -11.17155 -11.04012 -10.53539 -10.20104 -10.01889 -9.67321 -9.51002 -8.69307 -7.84738 -5.20086 0.57969 1.27198 1.47314 1.47687 1.48932 1.54678 2.15447 2.42079 2.50631 2.94056 3.33271 3.40099 3.51555 3.73917 3.76500 4.01753 4.07197 4.08638 4.17854 4.20481 4.22838 4.30789 4.36544 4.46998 4.49768 4.56736 4.61044 4.66842 4.72768 4.76101 4.79378 4.81236 4.86107 4.88535 4.96871 4.98880 5.02837 5.03861 5.09095 5.14171 5.25800 5.34193 5.52916 5.58396 5.63668 5.81949 5.83033 5.89440 6.06232 6.22749 6.53345 6.94195 7.06812 7.23919 7.71920 8.52539 9.26176 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008343 B = 0.004629 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.442534 B = 6047.367085 C = 8626.288530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.537 5.537 3 C 0.013 3.987 4 C 0.044 3.956 5 C 0.124 3.876 6 N -0.281 5.281 7 C 0.013 3.987 8 C -0.199 4.199 9 C -0.038 4.038 10 C 0.588 3.412 11 O -0.583 6.583 12 N -0.581 5.581 13 C 0.106 3.894 14 C 0.130 3.870 15 H 0.088 0.912 16 C -0.111 4.111 17 C -0.123 4.123 18 C 0.169 3.831 19 H 0.082 0.918 20 C 0.102 3.898 21 N -0.606 5.606 22 C -0.237 4.237 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.932 5.932 26 Si 0.971 3.029 27 H -0.296 1.296 28 H -0.282 1.282 29 H -0.280 1.280 30 N -0.276 5.276 31 H 0.013 0.987 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.012 0.988 37 H 0.080 0.920 38 H 0.022 0.978 39 H 0.098 0.902 40 H 0.151 0.849 41 H 0.234 0.766 42 H 0.168 0.832 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.028 0.972 50 H 0.129 0.871 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.004 -6.567 -17.051 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.135 4.135 4 C -0.085 4.085 5 C 0.005 3.995 6 N -0.069 5.069 7 C -0.130 4.130 8 C -0.227 4.227 9 C -0.196 4.196 10 C 0.376 3.624 11 O -0.464 6.464 12 N -0.311 5.311 13 C -0.019 4.019 14 C 0.022 3.978 15 H 0.106 0.894 16 C -0.150 4.150 17 C -0.162 4.162 18 C 0.062 3.938 19 H 0.100 0.900 20 C -0.023 4.023 21 N -0.328 5.328 22 C -0.365 4.365 23 H 0.094 0.906 24 C -0.247 4.247 25 N -0.580 5.580 26 Si 0.800 3.200 27 H -0.222 1.222 28 H -0.209 1.209 29 H -0.207 1.207 30 N -0.113 5.113 31 H 0.031 0.969 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.030 0.970 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.117 0.883 40 H 0.169 0.831 41 H 0.250 0.750 42 H 0.185 0.815 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.046 0.954 50 H 0.146 0.854 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.501 -6.042 -17.248 18.822 hybrid contribution -1.064 0.486 1.662 2.032 sum 3.437 -5.556 -15.586 16.900 Atomic orbital electron populations 1.22463 0.86257 1.03093 1.00849 1.62070 1.08877 1.14386 1.40748 1.22598 1.01805 0.88262 1.00848 1.22248 0.94642 0.99319 0.92276 1.22232 0.93725 0.98144 0.85434 1.46067 1.37268 1.19021 1.04558 1.23530 0.98954 0.89441 1.01047 1.21956 1.07143 1.02265 0.91382 1.21888 1.06389 0.97948 0.93349 1.17465 0.77769 0.81700 0.85491 1.90671 1.49835 1.36053 1.69800 1.48210 1.56038 1.19440 1.07429 1.22371 1.00377 0.99606 0.79506 1.22150 0.90336 0.87491 0.97778 0.89438 1.22358 0.96558 0.99880 0.96184 1.22551 0.97108 0.99464 0.97116 1.21824 0.91140 0.95604 0.85263 0.89971 1.22984 0.94856 0.85660 0.98776 1.45414 1.40857 1.43176 1.03323 1.19263 1.03961 1.21487 0.91826 0.90583 1.25513 0.98924 1.02969 0.97318 1.70043 1.33399 1.44948 1.09578 0.85273 0.78171 0.79290 0.77216 1.22184 1.20870 1.20661 1.73365 1.22131 1.24439 0.91327 0.96875 0.89354 0.90485 0.89794 0.89509 0.96963 0.90184 0.95994 0.88338 0.83073 0.75010 0.81483 0.89647 0.93762 0.91059 0.91963 0.92424 0.92641 0.95353 0.85411 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.57 127.69 1.22 1.59 16 2 N -0.54 -9.53 5.02 -948.85 -4.76 -14.29 16 3 C 0.01 0.22 9.32 127.69 1.19 1.41 16 4 C 0.04 0.91 5.06 86.30 0.44 1.35 16 5 C 0.12 1.97 6.32 86.38 0.55 2.52 16 6 N -0.28 -6.38 3.41 -347.94 -1.19 -7.57 16 7 C 0.01 0.24 11.40 83.53 0.95 1.19 16 8 C -0.20 -5.27 10.81 22.41 0.24 -5.02 16 9 C -0.04 -1.32 6.89 42.46 0.29 -1.03 16 10 C 0.59 24.47 7.71 86.75 0.67 25.14 16 11 O -0.58 -26.10 16.43 -3.94 -0.06 -26.16 16 12 N -0.58 -25.08 2.24 -817.39 -1.83 -26.91 16 13 C 0.11 4.50 5.98 86.46 0.52 5.02 16 14 C 0.13 5.48 4.27 45.47 0.19 5.68 16 15 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 16 C -0.11 -4.14 6.18 31.56 0.20 -3.95 16 17 C -0.12 -4.91 6.21 31.70 0.20 -4.71 16 18 C 0.17 8.02 3.14 45.61 0.14 8.16 16 19 H 0.08 4.45 6.37 -2.39 -0.02 4.43 16 20 C 0.10 4.66 5.61 86.55 0.49 5.14 16 21 N -0.61 -30.43 2.80 -635.93 -1.78 -32.21 16 22 C -0.24 -12.92 10.37 84.03 0.87 -12.05 16 23 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 24 C -0.05 -2.90 5.41 84.86 0.46 -2.44 16 25 N -0.93 -53.17 10.42 21.65 0.23 -52.95 16 26 Si 0.97 44.95 29.56 68.60 2.03 46.98 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 30 N -0.28 -8.99 8.01 -48.18 -0.39 -9.38 16 31 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 33 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.08 1.18 6.47 -2.39 -0.02 1.16 16 35 H 0.09 1.19 8.12 -2.39 -0.02 1.17 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.08 1.63 8.06 -2.39 -0.02 1.62 16 38 H 0.02 0.63 8.06 -2.39 -0.02 0.61 16 39 H 0.10 1.54 6.55 -2.39 -0.02 1.52 16 40 H 0.15 1.19 8.04 -2.39 -0.02 1.17 16 41 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.09 3.41 7.14 -2.39 -0.02 3.39 16 44 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 46 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 47 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.05 2.12 7.85 -2.39 -0.02 2.10 16 49 H 0.03 1.54 7.82 -2.39 -0.02 1.52 16 50 H 0.13 5.48 3.99 -56.81 -0.23 5.25 16 51 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 Total: -1.00 -71.58 397.19 1.56 -70.02 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.70 Total: 24.47 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 8.61 Total: 28.00 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -9.72 Total: -143.31 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.58 1.56 -70.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029312425.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.498 kcal (2) G-P(sol) polarization free energy of solvation -71.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds