Wall clock time and date at job start Wed Apr 1 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48502 * 109.47104 * 240.00385 * 3 2 1 5 5 H 1.48507 * 109.46706 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47206 * 120.00002 * 3 2 1 7 7 C 1.38815 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.47665 * 134.45279 * 179.97438 * 9 7 2 11 11 C 1.53518 * 85.97945 * 204.33645 * 10 9 7 12 12 C 1.47660 * 134.45923 * 0.03103 * 9 7 2 13 13 C 1.52675 * 113.57146 * 91.01749 * 11 10 9 14 14 C 1.53338 * 109.11008 * 73.81352 * 13 11 10 15 15 N 1.46880 * 108.76115 * 52.40024 * 14 13 11 16 16 C 1.34780 * 120.46148 * 124.47717 * 15 14 13 17 17 O 1.21284 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99943 * 180.02562 * 16 15 14 19 19 H 1.09000 * 110.29494 * 299.29206 * 18 16 15 20 20 C 1.55330 * 110.33547 * 177.01913 * 18 16 15 21 21 C 1.53918 * 102.08399 * 218.92251 * 20 18 16 22 22 H 1.09007 * 111.00218 * 281.33913 * 21 20 18 23 23 C 1.52365 * 113.27061 * 155.08547 * 21 20 18 24 24 C 1.53969 * 107.58242 * 185.22867 * 23 21 20 25 25 C 1.52826 * 110.68303 * 56.29969 * 24 23 21 26 26 C 1.53635 * 110.64483 * 306.20437 * 25 24 23 27 27 N 1.45529 * 107.86426 * 57.13404 * 26 25 24 28 28 C 1.46336 * 117.22079 * 174.45203 * 27 26 25 29 29 C 1.46878 * 119.07430 * 304.74911 * 15 14 13 30 30 C 1.52664 * 113.56434 * 222.23848 * 11 10 9 31 31 H 0.96997 * 119.99986 * 0.02562 * 1 2 3 32 32 H 1.09004 * 113.79093 * 90.07299 * 10 9 7 33 33 H 1.09005 * 113.90199 * 318.61323 * 10 9 7 34 34 H 1.09004 * 113.79424 * 41.38942 * 12 9 7 35 35 H 1.09002 * 113.79221 * 269.92562 * 12 9 7 36 36 H 1.09000 * 109.52938 * 313.92640 * 13 11 10 37 37 H 1.08993 * 109.59137 * 193.73789 * 13 11 10 38 38 H 1.09000 * 109.58602 * 292.62541 * 14 13 11 39 39 H 1.08994 * 109.71097 * 172.26006 * 14 13 11 40 40 H 1.09000 * 110.91057 * 337.12130 * 20 18 16 41 41 H 1.08999 * 110.90872 * 100.68824 * 20 18 16 42 42 H 1.08997 * 109.83414 * 304.58799 * 23 21 20 43 43 H 1.09004 * 109.83134 * 65.54383 * 23 21 20 44 44 H 1.09003 * 109.15125 * 296.02621 * 24 23 21 45 45 H 1.09001 * 109.24146 * 176.63437 * 24 23 21 46 46 H 1.09003 * 109.24096 * 185.90627 * 25 24 23 47 47 H 1.08996 * 109.20904 * 66.49029 * 25 24 23 48 48 H 1.08997 * 109.78567 * 297.53527 * 26 25 24 49 49 H 1.09006 * 109.77850 * 176.72316 * 26 25 24 50 50 H 1.09002 * 110.15320 * 32.81216 * 28 27 26 51 51 H 1.09000 * 110.15425 * 271.13255 * 28 27 26 52 52 H 1.08994 * 109.59247 * 175.04109 * 29 15 14 53 53 H 1.09006 * 109.58758 * 295.47390 * 29 15 14 54 54 H 1.08999 * 109.53395 * 46.07644 * 30 11 10 55 55 H 1.09001 * 109.53331 * 166.22696 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7212 -3.8107 -0.0015 11 6 0.3476 -4.0807 -0.6316 12 6 -0.1044 -2.7567 -0.0006 13 6 0.3609 -4.0572 -2.1581 14 6 1.0376 -5.3329 -2.6739 15 7 0.3920 -6.4954 -2.0501 16 6 -0.1303 -7.4773 -2.8116 17 8 -0.0693 -7.4043 -4.0207 18 6 -0.7909 -8.6651 -2.1606 19 1 -0.0770 -9.1973 -1.5319 20 6 -1.3766 -9.6159 -3.2403 21 6 -2.7010 -10.0602 -2.5940 22 1 -2.5299 -10.8320 -1.8434 23 6 -3.7507 -10.4940 -3.6097 24 6 -5.0525 -10.7812 -2.8393 25 6 -5.4811 -9.5585 -2.0289 26 6 -4.3363 -9.0813 -1.1220 27 7 -3.1851 -8.8004 -1.9667 28 6 -2.0108 -8.2103 -1.3232 29 6 0.3181 -6.5701 -0.5851 30 6 -0.3581 -5.3056 -0.0554 31 1 -0.4850 0.8400 -0.0004 32 1 1.8386 -4.2351 0.9956 33 1 2.5594 -4.0355 -0.6611 34 1 -0.7170 -2.1420 -0.6602 35 1 -0.5299 -2.8677 0.9967 36 1 0.9155 -3.1851 -2.5043 37 1 -0.6618 -4.0107 -2.5319 38 1 2.0953 -5.3175 -2.4107 39 1 0.9314 -5.3933 -3.7569 40 1 -1.5588 -9.0808 -4.1723 41 1 -0.7185 -10.4688 -3.4059 42 1 -3.9194 -9.6949 -4.3314 43 1 -3.4166 -11.3946 -4.1250 44 1 -4.8905 -11.6212 -2.1639 45 1 -5.8403 -11.0367 -3.5480 46 1 -6.3421 -9.8192 -1.4134 47 1 -5.7576 -8.7548 -2.7113 48 1 -4.0852 -9.8615 -0.4035 49 1 -4.6366 -8.1759 -0.5945 50 1 -1.9206 -8.5745 -0.2998 51 1 -2.0860 -7.1229 -1.3290 52 1 -0.2642 -7.4438 -0.2926 53 1 1.3240 -6.6436 -0.1717 54 1 -0.2941 -5.2850 1.0325 55 1 -1.4049 -5.2996 -0.3590 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035705749.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:00 Heat of formation + Delta-G solvation = 4.069152 kcal Electronic energy + Delta-G solvation = -32472.468790 eV Core-core repulsion = 28509.631556 eV Total energy + Delta-G solvation = -3962.837234 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.95064 -40.81654 -39.71209 -37.10298 -35.88155 -34.39994 -33.13896 -32.49359 -32.04022 -30.32414 -28.63657 -28.17290 -26.73881 -25.42979 -24.71144 -23.85914 -23.14568 -22.63245 -22.08189 -20.74471 -20.37472 -18.69230 -18.66436 -17.98080 -17.17287 -16.93118 -16.80483 -16.53023 -16.11396 -15.85444 -15.62348 -15.34289 -15.17868 -15.10548 -14.70292 -14.63269 -14.23000 -14.02089 -13.77787 -13.69833 -13.59820 -13.34645 -13.19149 -13.04501 -12.93745 -12.81234 -12.75833 -12.54572 -12.44864 -12.23415 -12.12761 -12.01438 -11.77797 -11.64796 -11.54812 -11.51236 -11.23808 -11.20215 -11.11409 -11.01168 -10.79811 -10.68501 -9.57809 -9.18624 -8.86586 -7.88286 -5.20172 1.43663 1.46766 1.52740 1.63296 2.03773 2.48235 2.99271 3.32086 3.42295 3.44340 3.46078 3.63654 3.75629 3.95842 3.98684 4.03407 4.08581 4.11191 4.17997 4.30434 4.30540 4.37413 4.43018 4.45858 4.54269 4.57569 4.63547 4.68500 4.70887 4.76924 4.80532 4.84958 4.87583 4.90341 4.93556 4.96741 5.02376 5.05944 5.07539 5.13841 5.15366 5.22167 5.24867 5.29431 5.30367 5.36226 5.38443 5.54615 5.57067 5.60854 5.77269 5.98069 6.07903 6.36200 6.48778 6.94807 7.20390 7.64224 8.61437 9.28272 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.002386 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.794099 B =11731.567263 C =12325.535448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.640 5.640 10 C 0.130 3.870 11 C -0.080 4.080 12 C 0.168 3.832 13 C -0.088 4.088 14 C 0.125 3.875 15 N -0.604 5.604 16 C 0.521 3.479 17 O -0.585 6.585 18 C -0.111 4.111 19 H 0.132 0.868 20 C -0.100 4.100 21 C 0.072 3.928 22 H 0.071 0.929 23 C -0.106 4.106 24 C -0.116 4.116 25 C -0.115 4.115 26 C 0.061 3.939 27 N -0.557 5.557 28 C 0.061 3.939 29 C 0.109 3.891 30 C -0.112 4.112 31 H 0.246 0.754 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.017 0.983 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.068 0.932 52 H 0.114 0.886 53 H 0.086 0.914 54 H 0.091 0.909 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -27.588 -0.651 28.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.366 5.366 10 C 0.006 3.994 11 C -0.081 4.081 12 C 0.043 3.957 13 C -0.126 4.126 14 C 0.002 3.998 15 N -0.335 5.335 16 C 0.310 3.690 17 O -0.465 6.465 18 C -0.133 4.133 19 H 0.150 0.850 20 C -0.138 4.138 21 C -0.036 4.036 22 H 0.089 0.911 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.067 4.067 27 N -0.283 5.283 28 C -0.067 4.067 29 C -0.012 4.012 30 C -0.151 4.151 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.087 0.913 52 H 0.132 0.868 53 H 0.104 0.896 54 H 0.109 0.891 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.030 -26.841 -1.590 27.792 hybrid contribution 0.573 1.566 0.627 1.781 sum -6.458 -25.275 -0.963 26.104 Atomic orbital electron populations 1.70007 1.06387 1.25402 1.58560 1.25579 0.96495 1.00738 1.03442 0.85212 0.77167 0.79132 0.78203 1.20414 1.22254 1.20306 1.19360 0.90710 0.83605 1.42132 0.90112 1.46318 1.03568 1.00621 1.86110 1.22773 0.95573 0.83442 0.97610 1.22066 0.96574 0.94771 0.94702 1.22162 0.86882 0.90963 0.95716 1.21326 1.00059 0.97040 0.94208 1.21413 0.96483 0.83843 0.98061 1.48146 1.57025 1.20465 1.07898 1.20996 0.77066 0.84236 0.86688 1.90647 1.60034 1.79652 1.16200 1.22481 0.97987 0.93967 0.98828 0.84975 1.22325 0.95867 0.98140 0.97488 1.22638 0.93573 0.90861 0.96495 0.91071 1.21564 0.94608 1.01022 0.97187 1.21607 0.97092 0.97658 0.99007 1.21592 0.97290 0.97923 0.98449 1.21984 0.90520 1.00060 0.94151 1.62769 1.06659 1.24561 1.34330 1.22574 0.87672 1.00097 0.96325 1.21946 1.02733 0.98878 0.77687 1.21718 0.99354 0.92812 1.01227 0.94502 0.93026 0.93260 0.95126 0.96524 0.92907 0.93179 0.90558 0.90701 0.91828 0.89138 0.92886 0.90284 0.91319 0.91377 0.90283 0.92887 0.93652 0.91062 0.90724 0.91336 0.86824 0.89553 0.89089 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.71 11.39 21.65 0.25 -58.46 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 46.59 29.55 68.60 2.03 48.62 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.64 -32.46 3.53 -722.62 -2.55 -35.01 16 10 C 0.13 4.90 7.73 86.32 0.67 5.57 16 11 C -0.08 -2.76 0.77 -52.04 -0.04 -2.80 16 12 C 0.17 7.92 6.64 86.31 0.57 8.49 16 13 C -0.09 -3.11 5.21 30.60 0.16 -2.95 16 14 C 0.12 3.69 6.30 86.42 0.54 4.23 16 15 N -0.60 -14.92 2.91 -819.49 -2.39 -17.30 16 16 C 0.52 13.58 6.93 87.66 0.61 14.19 16 17 O -0.59 -20.31 14.86 -3.04 -0.05 -20.36 16 18 C -0.11 -1.94 2.51 -10.12 -0.03 -1.97 16 19 H 0.13 1.50 7.96 -2.39 -0.02 1.48 16 20 C -0.10 -1.81 5.93 31.70 0.19 -1.62 16 21 C 0.07 1.08 2.64 44.64 0.12 1.20 16 22 H 0.07 0.86 8.06 -2.38 -0.02 0.84 16 23 C -0.11 -1.54 5.69 30.71 0.17 -1.36 16 24 C -0.12 -1.38 5.95 30.86 0.18 -1.19 16 25 C -0.11 -1.54 6.07 30.75 0.19 -1.36 16 26 C 0.06 0.88 5.85 86.78 0.51 1.39 16 27 N -0.56 -9.98 4.65 -865.53 -4.03 -14.01 16 28 C 0.06 1.01 4.68 87.02 0.41 1.42 16 29 C 0.11 2.03 5.36 86.26 0.46 2.50 16 30 C -0.11 -2.74 5.19 30.44 0.16 -2.58 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.05 1.77 8.07 -2.38 -0.02 1.75 16 33 H 0.05 1.77 7.41 -2.38 -0.02 1.75 16 34 H 0.03 1.67 7.12 -2.38 -0.02 1.66 16 35 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.05 2.21 8.01 -2.39 -0.02 2.19 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.11 7.49 -2.39 -0.02 2.10 16 39 H 0.07 2.43 6.97 -2.39 -0.02 2.42 16 40 H 0.06 1.60 6.92 -2.39 -0.02 1.59 16 41 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.05 0.54 8.05 -2.39 -0.02 0.52 16 49 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 50 H 0.07 0.86 7.64 -2.39 -0.02 0.84 16 51 H 0.07 1.43 6.11 -2.39 -0.01 1.42 16 52 H 0.11 1.43 4.42 -2.39 -0.01 1.42 16 53 H 0.09 1.42 8.08 -2.38 -0.02 1.40 16 54 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 55 H 0.06 1.62 7.35 -2.39 -0.02 1.61 16 Total: -1.00 -73.85 403.16 0.35 -73.50 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.85 Total: 15.50 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.24 Total: 7.52 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -8.72 Total: -124.78 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -73.85 0.35 -73.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035705749.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.570 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds