Wall clock time and date at job start Wed Apr 1 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99705 * 2 1 4 4 H 1.48503 * 109.47409 * 269.99997 * 3 2 1 5 5 H 1.48502 * 109.46916 * 30.00047 * 3 2 1 6 6 H 1.48495 * 109.47193 * 149.99759 * 3 2 1 7 7 C 1.38810 * 120.00720 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00621 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99366 * 0.02562 * 7 2 1 10 10 C 1.47162 * 136.00177 * 359.63074 * 9 7 2 11 11 C 1.52946 * 87.85853 * 206.92769 * 10 9 7 12 12 C 1.47160 * 135.99831 * 180.02562 * 9 7 2 13 13 C 1.52547 * 114.12023 * 87.94828 * 11 10 9 14 14 C 1.53357 * 109.13378 * 190.32018 * 13 11 10 15 15 N 1.46890 * 108.74557 * 307.75895 * 14 13 11 16 16 C 1.34779 * 120.45683 * 235.60305 * 15 14 13 17 17 O 1.21280 * 119.99761 * 174.73672 * 16 15 14 18 18 C 1.50696 * 120.00265 * 354.73244 * 16 15 14 19 19 H 1.08998 * 109.47136 * 29.48848 * 18 16 15 20 20 C 1.53001 * 109.47144 * 269.48946 * 18 16 15 21 21 C 1.52998 * 117.49931 * 131.99128 * 20 18 16 22 22 C 1.52995 * 117.50157 * 63.36726 * 20 18 16 23 23 N 1.46904 * 109.47223 * 149.48845 * 18 16 15 24 24 C 1.48536 * 110.99971 * 177.60420 * 23 18 16 25 25 C 1.54940 * 103.22482 * 159.72036 * 24 23 18 26 26 C 1.54593 * 102.92155 * 322.58730 * 25 24 23 27 27 C 1.47901 * 110.99728 * 294.99730 * 23 18 16 28 28 C 1.46885 * 119.07583 * 55.62370 * 15 14 13 29 29 C 1.52558 * 114.11944 * 220.62064 * 11 10 9 30 30 H 0.96997 * 120.00441 * 0.02562 * 1 2 3 31 31 H 1.08999 * 113.49129 * 321.66811 * 10 9 7 32 32 H 1.08993 * 113.49092 * 92.17942 * 10 9 7 33 33 H 1.08995 * 113.48928 * 267.82752 * 12 9 7 34 34 H 1.09004 * 113.49262 * 38.32736 * 12 9 7 35 35 H 1.09004 * 109.52726 * 310.21592 * 13 11 10 36 36 H 1.08998 * 109.52995 * 70.41883 * 13 11 10 37 37 H 1.09000 * 109.59178 * 187.97836 * 14 13 11 38 38 H 1.08999 * 109.59218 * 67.53179 * 14 13 11 39 39 H 1.09003 * 115.54590 * 277.69997 * 20 18 16 40 40 H 1.08994 * 117.50021 * 0.02562 * 21 20 18 41 41 H 1.09009 * 117.49755 * 145.02157 * 21 20 18 42 42 H 1.09002 * 117.50136 * 214.98288 * 22 20 18 43 43 H 1.09006 * 117.49865 * 0.02562 * 22 20 18 44 44 H 1.08997 * 110.66584 * 278.15142 * 24 23 18 45 45 H 1.08995 * 110.66406 * 41.28735 * 24 23 18 46 46 H 1.09000 * 110.72036 * 204.22609 * 25 24 23 47 47 H 1.09001 * 110.72402 * 80.94276 * 25 24 23 48 48 H 1.09005 * 110.30390 * 263.04265 * 26 25 24 49 49 H 1.08993 * 110.31097 * 140.87663 * 26 25 24 50 50 H 1.08994 * 109.91748 * 333.51314 * 27 23 18 51 51 H 1.09001 * 109.91296 * 94.60559 * 27 23 18 52 52 H 1.09000 * 109.59055 * 184.58887 * 28 15 14 53 53 H 1.08997 * 109.71716 * 64.21964 * 28 15 14 54 54 H 1.08998 * 109.52590 * 289.56646 * 29 11 10 55 55 H 1.09006 * 109.52680 * 49.70038 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.0889 -2.7937 0.0042 11 6 0.3453 -4.0905 0.6890 12 6 1.6817 -3.8159 -0.0020 13 6 0.4024 -4.0029 2.2109 14 6 1.0885 -5.2591 2.7613 15 7 0.4230 -6.4436 2.2030 16 6 -0.0838 -7.3901 3.0178 17 8 -0.7146 -8.3158 2.5530 18 6 0.1336 -7.2983 4.5062 19 1 0.2221 -6.2514 4.7965 20 6 1.4172 -8.0418 4.8810 21 6 2.4089 -7.3217 5.7968 22 6 2.7340 -7.5083 4.3135 23 7 -1.0063 -7.9058 5.2059 24 6 -0.8004 -7.8851 6.6768 25 6 -2.2355 -8.0472 7.2379 26 6 -3.0888 -7.2201 6.2491 27 6 -2.2476 -7.1395 4.9618 28 6 0.3178 -6.5822 0.7445 29 6 -0.3742 -5.3356 0.1797 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7195 -2.1621 0.6299 32 1 -0.5012 -2.9461 -0.9932 33 1 1.7509 -4.2461 -1.0010 34 1 2.5473 -4.0480 0.6186 35 1 0.9700 -3.1196 2.5040 36 1 -0.6096 -3.9358 2.6103 37 1 1.0081 -5.2729 3.8483 38 1 2.1390 -5.2590 2.4704 39 1 1.3189 -9.1214 4.9948 40 1 2.1467 -6.3185 6.1327 41 1 2.9633 -7.9276 6.5136 42 1 3.5023 -8.2368 4.0543 43 1 2.6860 -6.6272 3.6734 44 1 -0.1692 -8.7173 6.9885 45 1 -0.3693 -6.9348 6.9915 46 1 -2.3046 -7.6357 8.2449 47 1 -2.5382 -9.0943 7.2263 48 1 -3.2675 -6.2213 6.6474 49 1 -4.0347 -7.7245 6.0520 50 1 -2.0049 -6.1001 4.7411 51 1 -2.7964 -7.5775 4.1280 52 1 -0.2702 -7.4676 0.5030 53 1 1.3136 -6.6754 0.3112 54 1 -1.4135 -5.3156 0.5076 55 1 -0.3362 -5.3585 -0.9095 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035761954.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:31 Heat of formation + Delta-G solvation = 48.610822 kcal Electronic energy + Delta-G solvation = -32919.071116 eV Core-core repulsion = 28958.165354 eV Total energy + Delta-G solvation = -3960.905762 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.97329 -40.76134 -39.24238 -37.86234 -37.04468 -34.43922 -33.17631 -32.27604 -31.88170 -29.81782 -28.94775 -27.73273 -26.55512 -25.04624 -24.60659 -23.31261 -23.17545 -22.53151 -22.02559 -21.34407 -20.23275 -19.01418 -18.67674 -18.28357 -17.33814 -16.95342 -16.90837 -16.73375 -16.28657 -16.09403 -15.64230 -15.49579 -15.11561 -15.07037 -14.87323 -14.51173 -14.31306 -14.17505 -13.80688 -13.72920 -13.44376 -13.30108 -13.22310 -13.01693 -12.91347 -12.83340 -12.64878 -12.41955 -12.23698 -12.17472 -12.13365 -12.08076 -12.03961 -11.66926 -11.64687 -11.50140 -11.40997 -11.22679 -11.15531 -10.91554 -10.81138 -10.45791 -9.59431 -9.37667 -8.88961 -7.88805 -5.21519 1.45666 1.47255 1.55768 1.58210 1.90395 2.47988 2.73799 2.99600 3.32484 3.43359 3.49109 3.55242 3.64656 3.73694 3.76232 3.94124 3.98214 3.98902 4.07507 4.09876 4.13297 4.25381 4.29199 4.34654 4.35867 4.51380 4.55729 4.62108 4.64539 4.71943 4.73116 4.80658 4.83509 4.85194 4.89518 4.92617 4.98069 5.02621 5.04546 5.07811 5.12579 5.17951 5.18957 5.22873 5.26368 5.27719 5.30341 5.32133 5.50955 5.56882 5.72463 5.86966 5.94511 5.95029 6.42842 6.92261 7.20555 7.62387 8.64316 9.28667 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.002811 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.260142 B = 9957.474804 C =10074.530434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.223 4.223 8 H 0.086 0.914 9 N -0.636 5.636 10 C 0.161 3.839 11 C -0.086 4.086 12 C 0.132 3.868 13 C -0.090 4.090 14 C 0.116 3.884 15 N -0.603 5.603 16 C 0.523 3.477 17 O -0.565 6.565 18 C 0.096 3.904 19 H 0.072 0.928 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.185 4.185 23 N -0.511 5.511 24 C 0.040 3.960 25 C -0.118 4.118 26 C -0.127 4.127 27 C 0.034 3.966 28 C 0.121 3.879 29 C -0.105 4.105 30 H 0.246 0.754 31 H 0.033 0.967 32 H 0.009 0.991 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.035 0.965 51 H 0.057 0.943 52 H 0.082 0.918 53 H 0.083 0.917 54 H 0.057 0.943 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -17.538 15.726 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.351 4.351 8 H 0.103 0.897 9 N -0.361 5.361 10 C 0.035 3.965 11 C -0.087 4.087 12 C 0.007 3.993 13 C -0.128 4.128 14 C -0.006 4.006 15 N -0.336 5.336 16 C 0.311 3.689 17 O -0.443 6.443 18 C -0.016 4.016 19 H 0.089 0.911 20 C -0.171 4.171 21 C -0.189 4.189 22 C -0.222 4.222 23 N -0.236 5.236 24 C -0.087 4.087 25 C -0.156 4.156 26 C -0.165 4.165 27 C -0.094 4.094 28 C -0.001 4.001 29 C -0.144 4.144 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.053 0.947 51 H 0.075 0.925 52 H 0.101 0.899 53 H 0.101 0.899 54 H 0.076 0.924 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.081 -18.205 15.273 23.788 hybrid contribution 0.019 2.253 -0.703 2.361 sum 1.100 -15.952 14.570 21.632 Atomic orbital electron populations 1.70026 1.06490 1.25394 1.58366 1.25590 0.96453 1.00737 1.03269 0.85115 0.77855 0.79303 0.77304 1.21759 1.22261 1.18934 1.19323 0.90661 0.82827 1.42322 0.89655 1.45899 1.03676 1.00634 1.85934 1.22006 0.87768 0.91249 0.95444 1.21829 0.97166 0.94198 0.95541 1.22518 0.95837 0.83757 0.97230 1.21338 1.00606 0.97685 0.93175 1.21957 0.96861 0.82821 0.98933 1.48139 1.57365 1.21335 1.06779 1.20731 0.77609 0.81299 0.89253 1.90641 1.41029 1.35037 1.77593 1.21396 0.92360 0.97705 0.90100 0.91069 1.21919 0.88049 0.99565 1.07566 1.23147 1.00739 1.01912 0.93091 1.23256 0.97450 1.03883 0.97650 1.64550 1.00926 1.49754 1.08388 1.23289 0.98208 1.01641 0.85515 1.22493 0.93402 1.00840 0.98887 1.22380 0.98875 1.01314 0.93912 1.22836 0.91810 0.95399 0.99381 1.21537 1.01600 0.97943 0.79056 1.21643 0.98898 0.92945 1.00878 0.94494 0.94856 0.97322 0.94160 0.92831 0.91619 0.92591 0.88321 0.89596 0.87389 0.87999 0.86762 0.87779 0.88337 0.89065 0.92791 0.88925 0.90836 0.90431 0.90680 0.94699 0.92467 0.89945 0.89901 0.92445 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.53 11.51 21.65 0.25 -57.28 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.22 -12.25 10.74 84.03 0.90 -11.35 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.64 -31.67 3.55 -738.28 -2.62 -34.29 16 10 C 0.16 7.58 6.54 83.31 0.55 8.12 16 11 C -0.09 -2.98 0.84 -52.52 -0.04 -3.02 16 12 C 0.13 4.96 7.62 83.31 0.64 5.59 16 13 C -0.09 -2.80 5.27 30.56 0.16 -2.64 16 14 C 0.12 2.72 4.37 86.42 0.38 3.09 16 15 N -0.60 -15.39 2.94 -818.48 -2.41 -17.79 16 16 C 0.52 14.52 5.89 87.66 0.52 15.04 16 17 O -0.57 -20.00 15.91 -3.03 -0.05 -20.04 16 18 C 0.10 2.09 1.21 44.17 0.05 2.14 16 19 H 0.07 1.43 5.34 -2.39 -0.01 1.42 16 20 C -0.15 -2.71 4.25 -10.80 -0.05 -2.76 16 21 C -0.15 -1.91 10.17 30.59 0.31 -1.60 16 22 C -0.19 -2.91 9.87 30.59 0.30 -2.61 16 23 N -0.51 -11.39 4.81 -862.25 -4.15 -15.53 16 24 C 0.04 0.63 5.72 86.65 0.50 1.13 16 25 C -0.12 -1.61 7.06 31.80 0.22 -1.39 16 26 C -0.13 -2.09 6.93 31.47 0.22 -1.87 16 27 C 0.03 0.77 5.88 86.45 0.51 1.28 16 28 C 0.12 3.14 6.35 86.42 0.55 3.69 16 29 C -0.10 -3.05 5.30 30.57 0.16 -2.89 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.03 1.79 7.11 -2.39 -0.02 1.77 16 32 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 33 H 0.04 1.48 8.06 -2.39 -0.02 1.46 16 34 H 0.05 1.84 7.53 -2.38 -0.02 1.82 16 35 H 0.07 2.39 7.95 -2.38 -0.02 2.38 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 1.92 5.04 -2.39 -0.01 1.91 16 38 H 0.09 1.85 6.66 -2.39 -0.02 1.84 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 41 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 1.66 4.78 -2.38 -0.01 1.64 16 44 H 0.09 1.29 7.95 -2.39 -0.02 1.27 16 45 H 0.05 0.76 8.02 -2.39 -0.02 0.74 16 46 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.03 0.82 7.65 -2.39 -0.02 0.80 16 51 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 52 H 0.08 2.29 6.97 -2.39 -0.02 2.28 16 53 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 54 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 55 H 0.08 2.27 8.10 -2.38 -0.02 2.25 16 Total: -1.00 -70.76 412.10 0.25 -70.51 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.86 Total: 20.57 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.34 Total: 6.62 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -8.92 Total: -124.90 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.76 0.25 -70.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035761954.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.122 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds