Wall clock time and date at job start Wed Apr 1 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99854 * 2 1 4 4 H 1.48505 * 109.47339 * 270.00055 * 3 2 1 5 5 H 1.48502 * 109.47294 * 30.00023 * 3 2 1 6 6 H 1.48506 * 109.47059 * 150.00285 * 3 2 1 7 7 C 1.38816 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.47750 * 120.00059 * 180.02562 * 9 7 2 11 11 C 1.52179 * 108.14683 * 205.00550 * 10 9 7 12 12 C 1.52565 * 112.69219 * 192.23954 * 11 10 9 13 13 H 1.10179 * 109.58943 * 171.12905 * 12 11 10 14 14 C 1.52521 * 111.18800 * 292.45892 * 12 11 10 15 15 C 1.51860 * 113.12510 * 68.82096 * 14 12 11 16 16 C 1.51867 * 114.19856 * 45.40258 * 15 14 12 17 17 C 1.52522 * 113.10588 * 314.60026 * 16 15 14 18 18 H 1.10175 * 109.60320 * 169.87219 * 17 16 15 19 19 C 1.52173 * 108.14594 * 82.09675 * 10 9 7 20 20 N 1.47247 * 108.63601 * 50.66874 * 17 16 15 21 21 C 1.34583 * 122.44047 * 119.24317 * 20 17 16 22 22 O 1.21283 * 119.99659 * 355.13608 * 21 20 17 23 23 C 1.50699 * 120.00240 * 175.14072 * 21 20 17 24 24 C 1.54996 * 113.19881 * 62.63839 * 23 21 20 25 25 C 1.54062 * 104.76148 * 146.46957 * 24 23 21 26 26 N 1.48243 * 106.69810 * 1.02188 * 25 24 23 27 27 C 1.48808 * 105.17455 * 332.51078 * 26 25 24 28 28 C 1.47673 * 108.91321 * 88.16181 * 26 25 24 29 29 C 1.52990 * 109.28890 * 312.91418 * 28 26 25 30 30 C 1.54015 * 113.03337 * 299.64914 * 23 21 20 31 31 H 0.96996 * 120.00183 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99697 * 0.02562 * 9 7 2 33 33 H 1.08957 * 106.62039 * 323.54628 * 10 9 7 34 34 H 1.09708 * 109.11894 * 70.81539 * 11 10 9 35 35 H 1.09710 * 109.11832 * 313.67030 * 11 10 9 36 36 H 1.09836 * 108.99490 * 307.21059 * 14 12 11 37 37 H 1.09805 * 109.07567 * 190.53798 * 14 12 11 38 38 H 1.08696 * 111.08720 * 278.81789 * 15 14 12 39 39 H 1.11036 * 107.38077 * 164.32780 * 15 14 12 40 40 H 1.09838 * 109.14439 * 193.09469 * 16 15 14 41 41 H 1.09809 * 109.18902 * 76.26179 * 16 15 14 42 42 H 1.09716 * 109.12117 * 46.31081 * 19 10 9 43 43 H 1.09712 * 109.11596 * 289.17351 * 19 10 9 44 44 H 1.09000 * 110.38384 * 265.28754 * 24 23 21 45 45 H 1.08996 * 110.37834 * 27.65696 * 24 23 21 46 46 H 1.08996 * 110.01899 * 241.70897 * 25 24 23 47 47 H 1.08997 * 110.01328 * 120.32826 * 25 24 23 48 48 H 1.09005 * 110.92858 * 284.56243 * 27 26 25 49 49 H 1.08993 * 110.93116 * 160.90066 * 27 26 25 50 50 H 1.09001 * 109.50259 * 72.86096 * 28 26 25 51 51 H 1.09008 * 109.49992 * 192.93106 * 28 26 25 52 52 H 1.08999 * 109.36886 * 64.97884 * 29 28 26 53 53 H 1.09000 * 109.36476 * 184.72649 * 29 28 26 54 54 H 1.08998 * 109.62945 * 291.83772 * 30 23 21 55 55 H 1.09003 * 109.63101 * 52.42360 * 30 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0644 -3.6676 -0.0005 11 6 1.1664 -4.7334 -0.6118 12 6 1.6997 -6.1465 -0.3967 13 1 0.9412 -6.8799 -0.7143 14 6 2.9899 -6.3737 -1.1777 15 6 4.1625 -5.5738 -0.6379 16 6 4.3017 -5.6162 0.8738 17 6 2.9783 -5.4081 1.6028 18 1 3.1081 -5.6283 2.6745 19 6 2.4735 -3.9787 1.4318 20 7 1.9795 -6.3304 1.0373 21 6 1.3669 -7.2732 1.7770 22 8 1.6941 -7.4450 2.9322 23 6 0.2746 -8.1155 1.1701 24 6 0.7631 -8.9883 -0.0139 25 6 -0.0811 -10.2742 0.0718 26 7 -0.9998 -10.1046 1.2228 27 6 -0.2962 -9.1768 2.1494 28 6 -2.2331 -9.4393 0.7569 29 6 -1.8610 -8.2353 -0.1104 30 6 -0.9255 -7.2839 0.6797 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.9475 -3.5176 -0.6209 34 1 1.0676 -4.5459 -1.6882 35 1 0.1648 -4.6555 -0.1709 36 1 2.8234 -6.1038 -2.2293 37 1 3.2406 -7.4424 -1.1536 38 1 4.1365 -4.5491 -0.9996 39 1 5.0881 -6.0105 -1.0685 40 1 5.0110 -4.8403 1.1921 41 1 4.7265 -6.5845 1.1700 42 1 1.6135 -3.8187 2.0940 43 1 3.2609 -3.2797 1.7403 44 1 0.5836 -8.4788 -0.9606 45 1 1.8220 -9.2214 0.0980 46 1 0.5666 -11.1355 0.2351 47 1 -0.6537 -10.4063 -0.8462 48 1 0.5067 -9.6899 2.6788 49 1 -0.9956 -8.7229 2.8512 50 1 -2.8258 -10.1412 0.1702 51 1 -2.8126 -9.1038 1.6170 52 1 -1.3583 -8.5817 -1.0134 53 1 -2.7665 -7.6945 -0.3857 54 1 -1.4459 -6.8526 1.5348 55 1 -0.5755 -6.4888 0.0213 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039310675.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:37 Heat of formation + Delta-G solvation = -27.811673 kcal Electronic energy + Delta-G solvation = -34136.879478 eV Core-core repulsion = 30172.659788 eV Total energy + Delta-G solvation = -3964.219690 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.72106 -41.10396 -39.09909 -36.57927 -34.74080 -33.82040 -33.64216 -32.96674 -32.56676 -30.69656 -30.25259 -27.23218 -26.92229 -25.60802 -25.11999 -24.30376 -23.00772 -22.53620 -21.55749 -21.45179 -20.47388 -19.45183 -18.42197 -17.83968 -17.36040 -17.18065 -16.81701 -16.21388 -15.98792 -15.71669 -15.41109 -15.15360 -15.09601 -14.83202 -14.73770 -14.59168 -14.44070 -14.09065 -14.01565 -13.84167 -13.70413 -13.56066 -13.49207 -12.94842 -12.81346 -12.75623 -12.61277 -12.58608 -12.33230 -12.23860 -12.00057 -11.95696 -11.90450 -11.83156 -11.75657 -11.69678 -11.57420 -11.47614 -11.09139 -11.00050 -10.73559 -10.59071 -9.59448 -9.50115 -9.00226 -7.93508 -5.20974 1.46077 1.47157 1.53240 1.55149 1.92503 2.55550 2.93468 3.33896 3.40382 3.48213 3.56515 3.66828 3.76319 3.83148 3.92109 3.96688 4.01140 4.07469 4.09638 4.12333 4.13146 4.28203 4.28693 4.35731 4.40024 4.44757 4.48997 4.54597 4.64139 4.66134 4.70501 4.77983 4.90200 4.91087 4.92807 4.93960 4.97109 5.00632 5.04254 5.06132 5.09358 5.13120 5.15757 5.18361 5.25000 5.27334 5.33840 5.42931 5.52058 5.61553 5.66518 5.77257 6.00105 6.27924 6.50507 7.12848 7.34658 8.08874 8.33895 9.30124 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003359 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.646820 B = 8334.553776 C = 9103.525049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.231 4.231 8 H 0.075 0.925 9 N -0.743 5.743 10 C 0.181 3.819 11 C -0.123 4.123 12 C 0.137 3.863 13 H 0.123 0.877 14 C -0.120 4.120 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.148 3.852 18 H 0.072 0.928 19 C -0.123 4.123 20 N -0.589 5.589 21 C 0.537 3.463 22 O -0.588 6.588 23 C -0.113 4.113 24 C -0.130 4.130 25 C 0.032 3.968 26 N -0.502 5.502 27 C 0.060 3.940 28 C 0.030 3.970 29 C -0.145 4.145 30 C -0.116 4.116 31 H 0.249 0.751 32 H 0.368 0.632 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.068 0.932 52 H 0.090 0.910 53 H 0.080 0.920 54 H 0.053 0.947 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -23.303 -5.811 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.383 5.383 10 C 0.074 3.926 11 C -0.162 4.162 12 C 0.034 3.966 13 H 0.141 0.859 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.152 4.152 17 C 0.044 3.956 18 H 0.090 0.910 19 C -0.164 4.164 20 N -0.319 5.319 21 C 0.326 3.674 22 O -0.469 6.469 23 C -0.118 4.118 24 C -0.169 4.169 25 C -0.096 4.096 26 N -0.222 5.222 27 C -0.069 4.069 28 C -0.098 4.098 29 C -0.184 4.184 30 C -0.154 4.154 31 H 0.057 0.943 32 H 0.199 0.801 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.117 0.883 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.116 0.884 51 H 0.087 0.913 52 H 0.109 0.891 53 H 0.099 0.901 54 H 0.071 0.929 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.776 -23.866 -4.951 24.439 hybrid contribution 0.099 2.672 0.466 2.714 sum 1.875 -21.194 -4.485 21.745 Atomic orbital electron populations 1.69811 1.06563 1.25775 1.60081 1.25474 0.96258 1.00816 1.04286 0.85243 0.77695 0.80022 0.77461 1.21240 1.22703 1.19634 1.19589 0.91343 0.85233 1.40170 0.90694 1.43179 1.05220 1.01098 1.88831 1.20363 0.94626 0.84729 0.92912 1.21928 0.98573 0.93819 1.01882 1.21835 0.98913 0.96498 0.79323 0.85939 1.21635 0.92889 1.01287 1.00022 1.21174 0.99137 1.01212 0.94035 1.21518 0.94966 1.02517 0.96163 1.21131 0.88678 0.87880 0.97879 0.91026 1.22235 0.99775 0.94717 0.99641 1.48304 1.40428 1.32351 1.10862 1.20414 0.82008 0.79765 0.85232 1.90646 1.66730 1.70207 1.19337 1.22528 0.93927 0.96649 0.98647 1.23082 1.01073 0.95974 0.96759 1.23168 0.94923 0.96886 0.94669 1.66440 1.04733 1.38940 1.12102 1.23229 0.97815 0.91118 0.94781 1.22691 0.92772 0.95040 0.99293 1.22559 1.00010 0.96542 0.99281 1.22398 0.94596 0.98031 1.00376 0.94257 0.80055 0.92073 0.89858 0.93291 0.88871 0.90182 0.92061 0.90742 0.90905 0.91591 0.95619 0.92785 0.88136 0.90893 0.89656 0.88345 0.90757 0.91147 0.88384 0.91302 0.89118 0.90120 0.92864 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.98 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.23 -12.56 9.84 84.03 0.83 -11.73 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.43 5.09 -323.01 -1.64 -38.07 16 10 C 0.18 6.66 2.26 44.21 0.10 6.76 16 11 C -0.12 -3.56 4.66 30.18 0.14 -3.42 16 12 C 0.14 2.97 2.00 44.54 0.09 3.05 16 13 H 0.12 2.10 2.81 -1.76 0.00 2.09 16 14 C -0.12 -2.10 5.44 30.06 0.16 -1.93 16 15 C -0.12 -2.43 4.92 29.85 0.15 -2.28 16 16 C -0.11 -2.73 5.44 30.06 0.16 -2.56 16 17 C 0.15 4.51 3.21 44.54 0.14 4.65 16 18 H 0.07 2.46 7.21 -1.76 -0.01 2.45 16 19 C -0.12 -4.53 4.91 30.18 0.15 -4.38 16 20 N -0.59 -15.90 2.51 -771.01 -1.94 -17.83 16 21 C 0.54 15.68 6.79 87.69 0.60 16.28 16 22 O -0.59 -21.93 15.72 -3.04 -0.05 -21.98 16 23 C -0.11 -2.41 0.66 -51.12 -0.03 -2.44 16 24 C -0.13 -1.90 4.42 31.64 0.14 -1.76 16 25 C 0.03 0.41 6.20 86.40 0.54 0.95 16 26 N -0.50 -8.80 6.07 -878.38 -5.33 -14.13 16 27 C 0.06 1.35 5.45 86.72 0.47 1.82 16 28 C 0.03 0.44 5.84 86.15 0.50 0.94 16 29 C -0.15 -2.00 5.56 31.30 0.17 -1.83 16 30 C -0.12 -2.33 4.83 31.64 0.15 -2.18 16 31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.37 19.68 7.65 -92.71 -0.71 18.97 16 33 H 0.06 2.24 5.35 -2.41 -0.01 2.23 16 34 H 0.08 2.25 8.20 -2.01 -0.02 2.23 16 35 H 0.05 1.57 6.91 -2.01 -0.01 1.55 16 36 H 0.09 1.34 8.21 -1.94 -0.02 1.32 16 37 H 0.08 1.12 8.21 -1.96 -0.02 1.11 16 38 H 0.06 1.46 5.70 -2.55 -0.01 1.45 16 39 H 0.07 1.22 8.30 -1.29 -0.01 1.21 16 40 H 0.07 1.73 8.21 -1.94 -0.02 1.71 16 41 H 0.07 1.48 8.21 -1.96 -0.02 1.47 16 42 H 0.02 1.09 8.20 -2.01 -0.02 1.07 16 43 H 0.05 2.10 8.20 -2.01 -0.02 2.08 16 44 H 0.10 1.09 5.25 -2.39 -0.01 1.07 16 45 H 0.07 1.12 8.00 -2.39 -0.02 1.10 16 46 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.10 0.88 6.94 -2.39 -0.02 0.86 16 48 H 0.07 1.91 7.93 -2.38 -0.02 1.89 16 49 H 0.07 1.73 7.68 -2.39 -0.02 1.71 16 50 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.07 1.11 7.87 -2.38 -0.02 1.09 16 52 H 0.09 0.94 5.37 -2.39 -0.01 0.93 16 53 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 55 H 0.08 1.63 4.22 -2.39 -0.01 1.62 16 Total: -1.00 -69.88 384.51 -1.49 -71.36 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.23 Total: 35.61 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.93 Total: -3.96 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -8.62 Total: -129.02 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -69.88 -1.49 -71.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039310675.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.550 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds