Wall clock time and date at job start Wed Apr 1 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86789 * 120.00252 * 2 1 4 4 H 1.48503 * 109.47111 * 269.99792 * 3 2 1 5 5 H 1.48497 * 109.47550 * 29.99611 * 3 2 1 6 6 H 1.48501 * 109.47054 * 149.99960 * 3 2 1 7 7 C 1.38817 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99866 * 163.22125 * 7 2 1 9 9 N 1.36941 * 119.99749 * 343.20958 * 7 2 1 10 10 C 1.46940 * 120.67730 * 152.06187 * 9 7 2 11 11 C 1.53190 * 108.88699 * 125.99074 * 10 9 7 12 12 C 1.53127 * 109.29712 * 55.06567 * 11 10 9 13 13 C 1.52490 * 109.61380 * 299.50225 * 12 11 10 14 14 C 1.54179 * 110.02324 * 298.40474 * 13 12 11 15 15 C 1.55040 * 102.72346 * 219.28988 * 14 13 12 16 16 N 1.48157 * 103.31033 * 37.01338 * 15 14 13 17 17 C 1.34776 * 127.02432 * 141.02131 * 16 15 14 18 18 O 1.21277 * 120.00686 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99492 * 359.95510 * 17 16 15 20 20 H 1.08997 * 109.57699 * 59.74065 * 19 17 16 21 21 C 1.53135 * 109.58176 * 299.33592 * 19 17 16 22 22 N 1.46900 * 109.37474 * 240.21206 * 21 19 17 23 23 C 1.46948 * 111.05531 * 61.99325 * 22 21 19 24 24 C 1.53130 * 109.34974 * 298.03296 * 23 22 21 25 25 C 1.53390 * 108.84583 * 359.95238 * 24 23 22 26 26 C 1.53395 * 109.26475 * 300.69270 * 25 24 23 27 27 C 1.46937 * 111.05741 * 297.99670 * 22 21 19 28 28 C 1.47609 * 105.95396 * 320.98589 * 16 15 14 29 29 C 1.47029 * 120.69020 * 332.08480 * 9 7 2 30 30 H 0.97001 * 119.99939 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.56761 * 245.80808 * 10 9 7 32 32 H 1.08995 * 109.57235 * 6.05038 * 10 9 7 33 33 H 1.08995 * 109.49929 * 175.01109 * 11 10 9 34 34 H 1.09001 * 109.49685 * 295.08662 * 11 10 9 35 35 H 1.08997 * 109.44883 * 179.46059 * 12 11 10 36 36 H 1.09007 * 109.44668 * 59.54285 * 12 11 10 37 37 H 1.09001 * 110.75413 * 337.60078 * 14 13 12 38 38 H 1.08997 * 110.76439 * 100.97691 * 14 13 12 39 39 H 1.08991 * 110.65125 * 278.55674 * 15 14 13 40 40 H 1.09004 * 110.78872 * 155.53003 * 15 14 13 41 41 H 1.08999 * 109.48927 * 0.18485 * 21 19 17 42 42 H 1.09006 * 109.48719 * 120.24249 * 21 19 17 43 43 H 1.08998 * 109.48768 * 178.07305 * 23 22 21 44 44 H 1.08995 * 109.51451 * 58.01047 * 23 22 21 45 45 H 1.09001 * 109.57628 * 240.13826 * 24 23 22 46 46 H 1.09004 * 109.67714 * 119.82044 * 24 23 22 47 47 H 1.08994 * 110.11446 * 179.63402 * 25 24 23 48 48 H 1.08991 * 109.57585 * 179.10065 * 26 25 24 49 49 H 1.09001 * 109.57786 * 299.49205 * 26 25 24 50 50 H 1.09008 * 109.49427 * 181.92097 * 27 22 21 51 51 H 1.09003 * 109.49062 * 301.98732 * 27 22 21 52 52 H 1.09008 * 109.97218 * 265.96029 * 28 16 15 53 53 H 1.09005 * 109.97442 * 144.69101 * 28 16 15 54 54 H 1.08998 * 109.58284 * 112.97836 * 29 9 7 55 55 H 1.09006 * 109.69256 * 352.64263 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0557 -1.2221 -0.2706 9 7 1.3691 -2.3630 0.3415 10 6 1.8162 -3.6539 -0.1996 11 6 2.0746 -4.6165 0.9637 12 6 0.8164 -4.7111 1.8313 13 6 0.4752 -3.3339 2.3902 14 6 1.6260 -2.8261 3.2818 15 6 0.8745 -2.1398 4.4514 16 7 -0.3044 -3.0129 4.6583 17 6 -0.8572 -3.3644 5.8362 18 8 -1.8281 -4.0908 5.8578 19 6 -0.2684 -2.8552 7.1266 20 1 -0.2951 -1.7655 7.1353 21 6 1.1796 -3.3368 7.2554 22 7 1.3142 -4.1576 8.4662 23 6 0.4655 -5.3548 8.3895 24 6 -1.0026 -4.9306 8.2927 25 6 -1.0780 -3.3986 8.3107 26 6 -0.4537 -2.8764 9.6109 27 6 1.0106 -3.3742 9.6716 28 6 -0.7505 -3.4184 3.3110 29 6 0.2190 -2.3433 1.2573 30 1 -0.4850 0.8401 -0.0004 31 1 1.0432 -4.0650 -0.8488 32 1 2.7345 -3.5125 -0.7695 33 1 2.3213 -5.6031 0.5717 34 1 2.9048 -4.2459 1.5651 35 1 0.9943 -5.4029 2.6545 36 1 -0.0150 -5.0734 1.2265 37 1 2.2291 -3.6582 3.6452 38 1 2.2430 -2.1065 2.7437 39 1 0.5633 -1.1337 4.1705 40 1 1.4950 -2.1130 5.3472 41 1 1.4440 -3.9320 6.3814 42 1 1.8445 -2.4757 7.3240 43 1 0.6107 -5.9613 9.2835 44 1 0.7350 -5.9362 7.5079 45 1 -1.5559 -5.3335 9.1411 46 1 -1.4329 -5.3065 7.3644 47 1 -2.1156 -3.0735 8.2361 48 1 -0.4902 -1.7872 9.6218 49 1 -1.0048 -3.2708 10.4647 50 1 1.1512 -3.9969 10.5552 51 1 1.6772 -2.5133 9.7233 52 1 -1.5291 -2.7423 2.9574 53 1 -1.1279 -4.4408 3.3357 54 1 -0.6830 -2.6309 0.7173 55 1 0.0945 -1.3417 1.6690 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040209491.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:47 Heat of formation + Delta-G solvation = -19.938738 kcal Electronic energy + Delta-G solvation = -33536.444963 eV Core-core repulsion = 29572.566669 eV Total energy + Delta-G solvation = -3963.878294 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36676 -40.95847 -39.31063 -37.29037 -34.92186 -33.39182 -33.12963 -32.01218 -31.76316 -31.58571 -30.45495 -27.35768 -27.09115 -24.95612 -24.03415 -23.98196 -23.85268 -23.70548 -22.15545 -20.46737 -19.65853 -18.63236 -18.34071 -18.14635 -17.51813 -17.38726 -16.87489 -16.76397 -16.39013 -15.76966 -15.63780 -15.30633 -15.17891 -14.86015 -14.53302 -14.25674 -14.01464 -13.92291 -13.80942 -13.62068 -13.27243 -13.23499 -13.12206 -13.10925 -12.97936 -12.90329 -12.88512 -12.62522 -12.50932 -12.47891 -12.36522 -12.12675 -11.99648 -11.82301 -11.63544 -11.38246 -11.32774 -11.17655 -11.11378 -11.00505 -10.57964 -10.49179 -9.72944 -9.20916 -8.62871 -7.83352 -5.27836 1.48768 1.51473 1.56314 1.60119 1.92067 2.54578 3.00527 3.29540 3.33808 3.51215 3.60753 3.74332 3.78798 3.84326 3.95594 3.99368 4.05561 4.20331 4.25347 4.27185 4.30782 4.32320 4.38079 4.39948 4.46202 4.50627 4.58301 4.61739 4.63528 4.75373 4.78644 4.80572 4.92991 4.94563 4.96401 5.02315 5.03812 5.07940 5.14146 5.14889 5.17970 5.19803 5.20689 5.29567 5.36339 5.41240 5.43069 5.51738 5.63783 5.69798 5.77169 6.06074 6.13762 6.42524 6.56421 7.10636 7.18800 7.90027 8.43282 9.22930 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.003202 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.951542 B = 8743.722731 C = 9442.012377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.959 3.041 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.603 5.603 10 C 0.137 3.863 11 C -0.120 4.120 12 C -0.091 4.091 13 C -0.084 4.084 14 C -0.103 4.103 15 C 0.099 3.901 16 N -0.613 5.613 17 C 0.531 3.469 18 O -0.579 6.579 19 C -0.128 4.128 20 H 0.110 0.890 21 C 0.065 3.935 22 N -0.529 5.529 23 C 0.055 3.945 24 C -0.157 4.157 25 C -0.070 4.070 26 C -0.141 4.141 27 C 0.050 3.950 28 C 0.123 3.877 29 C 0.204 3.796 30 H 0.247 0.753 31 H 0.006 0.994 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.044 0.956 53 H 0.066 0.934 54 H -0.018 1.018 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -7.773 19.734 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.241 4.241 3 Si 0.788 3.212 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.326 5.326 10 C 0.012 3.988 11 C -0.158 4.158 12 C -0.128 4.128 13 C -0.086 4.086 14 C -0.141 4.141 15 C -0.023 4.023 16 N -0.345 5.345 17 C 0.322 3.678 18 O -0.460 6.460 19 C -0.151 4.151 20 H 0.128 0.872 21 C -0.064 4.064 22 N -0.249 5.249 23 C -0.073 4.073 24 C -0.196 4.196 25 C -0.090 4.090 26 C -0.180 4.180 27 C -0.078 4.078 28 C 0.000 4.000 29 C 0.078 3.922 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.129 0.871 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.108 0.892 52 H 0.063 0.937 53 H 0.085 0.915 54 H 0.000 1.000 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.130 -8.216 19.850 21.876 hybrid contribution -1.447 1.399 -1.074 2.281 sum 2.682 -6.818 18.776 20.154 Atomic orbital electron populations 1.70191 1.06698 1.25592 1.55725 1.25698 0.95795 1.01174 1.01456 0.85403 0.78431 0.80035 0.77364 1.21820 1.22238 1.18897 1.19455 0.92713 0.85628 1.40542 0.91411 1.44258 1.35346 1.02248 1.50733 1.21087 0.97015 0.86329 0.94366 1.21886 0.97420 0.99202 0.97334 1.21358 0.97986 0.94585 0.98895 1.21600 0.94177 0.97414 0.95437 1.22540 0.96494 1.00515 0.94544 1.22801 0.86085 0.93301 1.00077 1.48952 1.31731 1.48807 1.05041 1.20820 0.82657 0.79754 0.84602 1.90600 1.28731 1.39375 1.87288 1.22102 0.99195 1.02757 0.91022 0.87178 1.22326 0.91922 0.98507 0.93655 1.62592 1.52362 1.07298 1.02645 1.22186 0.89827 0.92662 1.02637 1.22386 0.98678 0.95570 1.02922 1.20922 0.98478 0.95829 0.93740 1.22550 0.97842 1.01597 0.96045 1.22630 0.94372 0.98234 0.92535 1.21872 0.96707 0.99647 0.81821 1.20397 0.87162 0.96650 0.87989 0.94373 0.97636 0.92729 0.90345 0.91637 0.91371 0.93341 0.89962 0.90486 0.92004 0.87125 0.91052 0.87528 0.89131 0.92141 0.91208 0.91920 0.91913 0.90356 0.90464 0.89308 0.89236 0.93736 0.91505 1.00029 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.89 11.19 21.65 0.24 -53.65 16 2 C -0.05 -2.45 4.92 84.86 0.42 -2.04 16 3 Si 0.96 42.99 29.59 68.60 2.03 45.02 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.25 -13.13 9.59 84.03 0.81 -12.33 16 8 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 9 N -0.60 -28.53 2.50 -699.82 -1.75 -30.28 16 10 C 0.14 5.43 6.50 86.36 0.56 5.99 16 11 C -0.12 -3.68 5.88 30.70 0.18 -3.50 16 12 C -0.09 -2.82 4.33 30.47 0.13 -2.69 16 13 C -0.08 -2.92 0.63 -51.88 -0.03 -2.96 16 14 C -0.10 -3.12 5.00 31.69 0.16 -2.97 16 15 C 0.10 2.67 6.52 86.76 0.57 3.24 16 16 N -0.61 -18.52 3.20 -809.67 -2.59 -21.11 16 17 C 0.53 15.90 6.69 87.66 0.59 16.48 16 18 O -0.58 -21.34 14.06 -3.02 -0.04 -21.38 16 19 C -0.13 -2.76 2.10 -11.36 -0.02 -2.79 16 20 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 21 C 0.06 1.19 3.99 86.35 0.34 1.54 16 22 N -0.53 -9.24 5.22 -891.75 -4.65 -13.89 16 23 C 0.06 1.04 6.09 86.34 0.53 1.57 16 24 C -0.16 -3.43 5.44 30.77 0.17 -3.26 16 25 C -0.07 -1.45 2.54 -10.40 -0.03 -1.48 16 26 C -0.14 -2.00 5.90 31.33 0.18 -1.81 16 27 C 0.05 0.66 6.13 86.90 0.53 1.19 16 28 C 0.12 4.27 6.28 86.35 0.54 4.81 16 29 C 0.20 9.35 3.64 86.16 0.31 9.67 16 30 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.98 7.14 -2.39 -0.02 1.96 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 37 H 0.08 2.16 7.63 -2.39 -0.02 2.14 16 38 H 0.08 2.76 7.48 -2.39 -0.02 2.74 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 2.21 5.21 -2.38 -0.01 2.20 16 41 H 0.07 1.52 6.93 -2.39 -0.02 1.50 16 42 H 0.11 1.53 7.66 -2.38 -0.02 1.51 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.82 5.56 -2.39 -0.01 1.80 16 47 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 51 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.04 1.73 7.67 -2.38 -0.02 1.71 16 53 H 0.07 2.33 7.60 -2.38 -0.02 2.31 16 54 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 55 H 0.06 3.03 6.09 -2.38 -0.01 3.01 16 Total: -1.00 -64.72 394.46 0.02 -64.70 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.85 Total: 21.91 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.94 Total: 8.68 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -8.75 Total: -118.92 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.04 Total: -21.38 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -64.72 0.02 -64.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209491.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.759 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds