Wall clock time and date at job start Wed Apr 1 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48504 * 109.46951 * 270.00357 * 3 2 1 5 5 H 1.48498 * 109.47029 * 30.00082 * 3 2 1 6 6 H 1.48501 * 109.47136 * 150.00319 * 3 2 1 7 7 C 1.38809 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00012 * 197.45552 * 7 2 1 9 9 N 1.36935 * 119.99948 * 17.46313 * 7 2 1 10 10 C 1.46930 * 120.55457 * 27.96229 * 9 7 2 11 11 C 1.53344 * 108.68688 * 125.67603 * 10 9 7 12 12 C 1.52105 * 109.44436 * 53.30247 * 11 10 9 13 13 C 1.54387 * 110.51115 * 64.09234 * 12 11 10 14 14 C 1.54458 * 102.87020 * 83.33246 * 13 12 11 15 15 N 1.47084 * 107.29413 * 21.50815 * 14 13 12 16 16 C 1.34775 * 125.62827 * 180.99213 * 15 14 13 17 17 O 1.21283 * 120.00316 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00060 * 0.02562 * 16 15 14 19 19 H 1.09000 * 109.57422 * 60.00127 * 18 16 15 20 20 C 1.53143 * 109.57879 * 299.74297 * 18 16 15 21 21 N 1.46906 * 109.37047 * 240.06994 * 20 18 16 22 22 C 1.46947 * 111.05822 * 297.99706 * 21 20 18 23 23 C 1.53130 * 109.35125 * 61.95509 * 22 21 20 24 24 C 1.53381 * 109.68847 * 180.33358 * 18 16 15 25 25 C 1.53392 * 108.59833 * 60.90209 * 24 18 16 26 26 C 1.46946 * 111.05503 * 61.99136 * 21 20 18 27 27 C 1.47571 * 108.74518 * 1.25161 * 15 14 13 28 28 C 1.52110 * 111.60080 * 300.69998 * 12 11 10 29 29 C 1.46934 * 120.54917 * 207.98696 * 9 7 2 30 30 H 0.97005 * 120.00074 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.60592 * 5.91680 * 10 9 7 32 32 H 1.09000 * 109.73317 * 245.50794 * 10 9 7 33 33 H 1.09002 * 109.47279 * 293.31336 * 11 10 9 34 34 H 1.08993 * 109.48430 * 173.30309 * 11 10 9 35 35 H 1.09003 * 110.73032 * 324.99072 * 13 12 11 36 36 H 1.09000 * 110.89455 * 201.75117 * 13 12 11 37 37 H 1.09002 * 109.87980 * 262.08381 * 14 13 12 38 38 H 1.08991 * 109.87932 * 140.93090 * 14 13 12 39 39 H 1.08993 * 109.48906 * 0.04065 * 20 18 16 40 40 H 1.08998 * 109.48650 * 120.08387 * 20 18 16 41 41 H 1.08995 * 109.49199 * 181.91592 * 22 21 20 42 42 H 1.08996 * 109.48775 * 301.99260 * 22 21 20 43 43 H 1.09004 * 109.57389 * 240.26128 * 23 22 21 44 44 H 1.08994 * 109.68611 * 119.94121 * 23 22 21 45 45 H 1.08999 * 110.11784 * 300.26094 * 24 18 16 46 46 H 1.08996 * 109.57169 * 299.19227 * 25 24 18 47 47 H 1.09001 * 109.67907 * 178.86827 * 25 24 18 48 48 H 1.09002 * 109.48938 * 58.00148 * 26 21 20 49 49 H 1.09004 * 109.48918 * 178.05176 * 26 21 20 50 50 H 1.08997 * 110.38093 * 95.23870 * 27 15 14 51 51 H 1.08998 * 110.37735 * 217.59125 * 27 15 14 52 52 H 1.08999 * 109.47642 * 179.29432 * 28 12 11 53 53 H 1.09011 * 109.47264 * 299.30539 * 28 12 11 54 54 H 1.09003 * 109.60426 * 354.08658 * 29 9 7 55 55 H 1.09002 * 109.59751 * 114.40180 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2238 0.2800 9 7 1.3729 -2.3605 -0.3569 10 6 0.2339 -2.3314 -1.2847 11 6 0.5218 -3.2900 -2.4464 12 6 0.8752 -4.6626 -1.8945 13 6 -0.3289 -5.2700 -1.1430 14 6 -1.1650 -5.8951 -2.2813 15 7 -0.2609 -6.1084 -3.4217 16 6 -0.6131 -6.6197 -4.6179 17 8 0.2196 -6.7520 -5.4898 18 6 -2.0415 -7.0271 -4.8722 19 1 -2.6944 -6.1623 -4.7544 20 6 -2.4492 -8.1172 -3.8769 21 7 -2.8320 -9.3300 -4.6122 22 6 -3.9929 -9.0786 -5.4773 23 6 -3.6296 -8.0154 -6.5178 24 6 -2.1750 -7.5818 -6.2960 25 6 -1.2716 -8.8145 -6.4275 26 6 -1.7009 -9.8552 -5.3895 27 6 1.0968 -5.6759 -3.0378 28 6 2.0950 -4.6044 -0.9876 29 6 1.8163 -3.6533 0.1825 30 1 -0.4850 0.8401 0.0004 31 1 0.1013 -1.3202 -1.6693 32 1 -0.6714 -2.6470 -0.7660 33 1 1.3569 -2.9084 -3.0339 34 1 -0.3617 -3.3694 -3.0797 35 1 -0.8955 -4.4928 -0.6301 36 1 -0.0020 -6.0354 -0.4392 37 1 -1.9683 -5.2160 -2.5672 38 1 -1.5812 -6.8481 -1.9551 39 1 -1.6098 -8.3408 -3.2185 40 1 -3.2946 -7.7696 -3.2831 41 1 -4.2756 -10.0013 -5.9839 42 1 -4.8276 -8.7250 -4.8721 43 1 -4.2885 -7.1543 -6.4054 44 1 -3.7384 -8.4300 -7.5199 45 1 -1.8828 -6.8237 -7.0226 46 1 -0.2350 -8.5280 -6.2503 47 1 -1.3684 -9.2354 -7.4283 48 1 -0.8669 -10.0669 -4.7203 49 1 -2.0024 -10.7719 -5.8963 50 1 1.6810 -6.5264 -2.6868 51 1 1.5940 -5.1944 -3.8798 52 1 2.3095 -5.6013 -0.6025 53 1 2.9524 -4.2415 -1.5546 54 1 2.7270 -3.5135 0.7651 55 1 1.0359 -4.0712 0.8185 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040699896.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:25 Heat of formation + Delta-G solvation = -22.581504 kcal Electronic energy + Delta-G solvation = -33005.889537 eV Core-core repulsion = 29041.896644 eV Total energy + Delta-G solvation = -3963.992893 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.40892 -41.08250 -39.33042 -37.39449 -34.87594 -33.24874 -32.99751 -31.94462 -31.84216 -31.62292 -30.63399 -28.53092 -26.10091 -24.98939 -24.06791 -23.95090 -23.81839 -23.52244 -22.47720 -20.51410 -19.66675 -18.73388 -18.32356 -18.04316 -17.52646 -17.27729 -16.91160 -16.77326 -16.56432 -15.89299 -15.52457 -15.27529 -15.03870 -15.01281 -14.50978 -14.37749 -14.07260 -13.92545 -13.87908 -13.66585 -13.43515 -13.24579 -13.15635 -13.11065 -13.03988 -13.00802 -12.90743 -12.60100 -12.51537 -12.49488 -12.22280 -12.16302 -11.99365 -11.83067 -11.74698 -11.43885 -11.36063 -11.13916 -11.10733 -11.07755 -10.55252 -10.49536 -9.64813 -9.21137 -8.63714 -7.86718 -5.30265 1.44876 1.47246 1.54861 1.58015 1.95939 2.51030 3.00818 3.24839 3.33021 3.50869 3.61564 3.65067 3.75474 3.81538 3.87702 4.00379 4.06100 4.21326 4.25623 4.26737 4.28918 4.33484 4.37820 4.38454 4.47115 4.53222 4.59908 4.62858 4.71087 4.73176 4.76770 4.81424 4.89881 4.94005 4.96999 5.01572 5.03700 5.07263 5.08087 5.12952 5.17815 5.18699 5.24512 5.27644 5.35092 5.39492 5.41974 5.42890 5.55966 5.66844 5.81034 6.06466 6.12959 6.41004 6.53609 7.12772 7.17208 7.90003 8.39745 9.18816 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.002464 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.623433 B =11361.102754 C =11556.414064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.960 3.040 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.610 5.610 10 C 0.184 3.816 11 C -0.108 4.108 12 C -0.052 4.052 13 C -0.118 4.118 14 C 0.102 3.898 15 N -0.612 5.612 16 C 0.528 3.472 17 O -0.580 6.580 18 C -0.129 4.129 19 H 0.109 0.891 20 C 0.066 3.934 21 N -0.531 5.531 22 C 0.051 3.949 23 C -0.143 4.143 24 C -0.069 4.069 25 C -0.157 4.157 26 C 0.056 3.944 27 C 0.121 3.879 28 C -0.107 4.107 29 C 0.145 3.855 30 H 0.249 0.751 31 H 0.045 0.955 32 H 0.011 0.989 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.051 0.949 52 H 0.088 0.912 53 H 0.048 0.952 54 H 0.050 0.950 55 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -21.047 -8.853 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.789 3.211 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.333 5.333 10 C 0.058 3.942 11 C -0.148 4.148 12 C -0.053 4.053 13 C -0.156 4.156 14 C -0.020 4.020 15 N -0.345 5.345 16 C 0.318 3.682 17 O -0.461 6.461 18 C -0.152 4.152 19 H 0.127 0.873 20 C -0.063 4.063 21 N -0.250 5.250 22 C -0.077 4.077 23 C -0.182 4.182 24 C -0.089 4.089 25 C -0.196 4.196 26 C -0.073 4.073 27 C -0.001 4.001 28 C -0.147 4.147 29 C 0.019 3.981 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.096 0.904 51 H 0.070 0.930 52 H 0.107 0.893 53 H 0.067 0.933 54 H 0.068 0.932 55 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.811 -21.415 -8.972 24.834 hybrid contribution 1.006 2.343 -0.754 2.659 sum -7.805 -19.073 -9.727 22.788 Atomic orbital electron populations 1.70158 1.06410 1.25664 1.55484 1.25694 0.96023 1.01173 1.01555 0.85376 0.78297 0.80133 0.77328 1.21718 1.22058 1.19410 1.19489 0.92919 0.86372 1.40283 0.91933 1.44294 1.36390 1.02278 1.50378 1.20553 0.88212 0.96965 0.88445 1.21745 0.99570 0.95383 0.98058 1.20904 0.96535 0.93396 0.94468 1.22663 0.95704 1.00350 0.96876 1.22326 0.92787 1.01708 0.85171 1.48623 1.10905 1.61757 1.13194 1.20756 0.91284 0.76132 0.79978 1.90616 1.54323 1.56388 1.44747 1.22091 0.92260 1.01853 0.99014 0.87308 1.22326 1.02108 0.87220 0.94611 1.62582 1.06463 1.28208 1.27788 1.22324 0.92917 0.98703 0.93711 1.22253 0.94297 1.00556 1.01067 1.20899 0.96523 0.97281 0.94209 1.22388 1.00638 0.96126 1.00444 1.22187 0.93185 0.97333 0.94580 1.22210 0.84363 0.96920 0.96642 1.21722 0.96081 1.00055 0.96805 1.21057 0.97420 0.85636 0.93950 0.94202 0.93658 0.97064 0.94607 0.92723 0.90623 0.88783 0.90868 0.88431 0.90740 0.87505 0.89521 0.89126 0.90635 0.90614 0.92001 0.91912 0.91418 0.91903 0.89313 0.90417 0.93004 0.89310 0.93283 0.93184 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 11.20 21.65 0.24 -54.03 16 2 C -0.05 -2.72 4.90 84.86 0.42 -2.30 16 3 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.26 -14.17 9.57 84.03 0.80 -13.37 16 8 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -29.57 2.98 -698.49 -2.08 -31.65 16 10 C 0.18 8.51 5.01 86.41 0.43 8.95 16 11 C -0.11 -4.03 4.87 30.41 0.15 -3.88 16 12 C -0.05 -1.53 0.55 -51.84 -0.03 -1.56 16 13 C -0.12 -2.86 4.92 31.56 0.16 -2.71 16 14 C 0.10 2.04 5.57 86.76 0.48 2.52 16 15 N -0.61 -15.26 3.23 -812.09 -2.62 -17.88 16 16 C 0.53 14.09 6.66 87.66 0.58 14.67 16 17 O -0.58 -19.90 14.02 -3.04 -0.04 -19.94 16 18 C -0.13 -2.50 2.12 -11.36 -0.02 -2.52 16 19 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 20 C 0.07 1.03 4.23 86.35 0.37 1.40 16 21 N -0.53 -8.23 5.22 -895.17 -4.67 -12.90 16 22 C 0.05 0.61 6.09 86.34 0.53 1.14 16 23 C -0.14 -1.90 5.75 30.77 0.18 -1.72 16 24 C -0.07 -1.35 2.60 -10.40 -0.03 -1.38 16 25 C -0.16 -3.21 5.43 30.77 0.17 -3.04 16 26 C 0.06 0.95 6.09 86.34 0.53 1.48 16 27 C 0.12 3.36 5.83 86.64 0.50 3.86 16 28 C -0.11 -3.28 4.84 30.41 0.15 -3.13 16 29 C 0.14 5.55 6.24 86.41 0.54 6.09 16 30 H 0.25 14.12 8.31 -92.70 -0.77 13.34 16 31 H 0.04 2.46 6.02 -2.39 -0.01 2.45 16 32 H 0.01 0.54 6.56 -2.39 -0.02 0.52 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16 35 H 0.08 2.16 6.18 -2.39 -0.01 2.15 16 36 H 0.09 1.91 7.99 -2.39 -0.02 1.89 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.43 6.16 -2.39 -0.01 1.41 16 39 H 0.07 1.29 6.39 -2.39 -0.02 1.27 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 1.45 8.11 -2.39 -0.02 1.43 16 46 H 0.06 1.71 5.59 -2.39 -0.01 1.69 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 50 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 51 H 0.05 1.68 7.94 -2.39 -0.02 1.66 16 52 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 53 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 54 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 55 H 0.03 1.00 7.63 -2.39 -0.02 0.98 16 Total: -1.00 -67.20 393.13 -0.39 -67.59 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.85 Total: 17.31 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.90 Total: 4.49 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -9.13 Total: -116.47 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.04 Total: -19.94 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.20 -0.39 -67.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040699896.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.013 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds