Wall clock time and date at job start Wed Apr 1 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48496 * 109.46953 * 274.96007 * 3 2 1 5 5 H 1.48496 * 109.46986 * 34.96175 * 3 2 1 6 6 H 1.48498 * 109.47301 * 154.96104 * 3 2 1 7 7 C 1.38813 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99784 * 170.37847 * 7 2 1 9 9 N 1.36931 * 120.00212 * 350.38230 * 7 2 1 10 10 C 1.47570 * 125.67169 * 346.25955 * 9 7 2 11 11 C 1.55175 * 105.00695 * 203.82996 * 10 9 7 12 12 C 1.53656 * 101.41965 * 324.50590 * 11 10 9 13 13 C 1.53659 * 111.41399 * 155.02385 * 12 11 10 14 14 C 1.55436 * 101.30765 * 87.06856 * 13 12 11 15 15 N 1.47555 * 104.88282 * 35.82894 * 14 13 12 16 16 C 1.34779 * 125.67834 * 156.03674 * 15 14 13 17 17 O 1.21276 * 120.00165 * 184.62679 * 16 15 14 18 18 C 1.51499 * 119.99590 * 4.61760 * 16 15 14 19 19 C 1.52466 * 108.85280 * 50.32503 * 18 16 15 20 20 C 1.52164 * 112.58574 * 171.22844 * 19 18 16 21 21 C 1.52268 * 112.56794 * 314.59700 * 20 19 18 22 22 N 1.45876 * 112.26984 * 47.09575 * 21 20 19 23 23 C 1.45827 * 113.92030 * 70.45560 * 22 21 20 24 24 C 1.52223 * 112.47242 * 289.02575 * 23 22 21 25 25 C 1.52137 * 112.73862 * 313.61175 * 24 23 22 26 26 C 1.46480 * 111.99560 * 301.94997 * 22 21 20 27 27 C 1.47405 * 108.65216 * 335.76955 * 15 14 13 28 28 C 1.47399 * 125.68131 * 166.21823 * 9 7 2 29 29 H 0.97001 * 119.99605 * 0.02562 * 1 2 3 30 30 H 1.09002 * 110.33283 * 322.71749 * 10 9 7 31 31 H 1.09000 * 110.32971 * 84.84150 * 10 9 7 32 32 H 1.08999 * 111.03789 * 206.47247 * 11 10 9 33 33 H 1.09000 * 111.03893 * 82.54360 * 11 10 9 34 34 H 1.09007 * 111.03443 * 205.29687 * 13 12 11 35 35 H 1.09000 * 111.03703 * 329.18690 * 13 12 11 36 36 H 1.08997 * 110.48550 * 276.93437 * 14 13 12 37 37 H 1.09006 * 110.29938 * 154.62283 * 14 13 12 38 38 H 1.09702 * 109.06477 * 49.81827 * 19 18 16 39 39 H 1.09698 * 109.07593 * 292.65192 * 19 18 16 40 40 H 1.08705 * 110.89806 * 79.33544 * 20 19 18 41 41 H 1.10534 * 108.06459 * 195.50741 * 20 19 18 42 42 H 1.09602 * 109.17769 * 168.46079 * 21 20 19 43 43 H 1.09645 * 109.10764 * 285.87799 * 21 20 19 44 44 H 1.09669 * 109.22675 * 50.30696 * 23 22 21 45 45 H 1.09659 * 109.23527 * 167.69479 * 23 22 21 46 46 H 1.08730 * 110.82127 * 78.56452 * 24 23 22 47 47 H 1.10593 * 107.88618 * 194.46312 * 24 23 22 48 48 H 1.09705 * 109.24396 * 166.30922 * 25 24 23 49 49 H 1.09704 * 109.24923 * 283.64260 * 25 24 23 50 50 H 1.08883 * 109.92166 * 184.24941 * 26 22 21 51 51 H 1.08883 * 109.93305 * 305.26531 * 26 22 21 52 52 H 1.08996 * 109.98671 * 121.72258 * 27 15 14 53 53 H 1.09001 * 109.98383 * 243.02816 * 27 15 14 54 54 H 1.09011 * 109.98191 * 58.56879 * 28 9 7 55 55 H 1.08996 * 109.98440 * 297.27034 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3928 2.1069 -1.3948 5 1 1.5040 2.6201 0.8023 6 1 3.5962 1.4123 0.5925 7 6 2.0102 -1.2021 0.0005 8 1 3.0788 -1.2087 -0.1558 9 7 1.3401 -2.3796 0.1992 10 6 -0.0413 -2.5093 0.7018 11 6 -0.1133 -3.9324 1.3162 12 6 0.7945 -4.7226 0.3609 13 6 1.3866 -5.9633 1.0474 14 6 0.2699 -7.0142 0.7933 15 7 -0.2533 -6.6944 -0.5488 16 6 -0.8822 -7.5556 -1.3731 17 8 -1.1969 -7.2051 -2.4906 18 6 -1.1956 -8.9614 -0.9036 19 6 -1.8930 -8.8848 0.4501 20 6 -2.4370 -10.2314 0.9042 21 6 -3.1720 -10.9694 -0.2065 22 7 -2.4212 -10.9753 -1.4572 23 6 -1.2303 -11.8163 -1.4279 24 6 -0.1277 -11.2335 -0.5551 25 6 0.1048 -9.7521 -0.8124 26 6 -2.1263 -9.6194 -1.9265 27 6 0.0205 -5.2747 -0.8355 28 6 1.8780 -3.7283 -0.0542 29 1 -0.4849 0.8401 -0.0004 30 1 -0.2389 -1.7567 1.4651 31 1 -0.7532 -2.4125 -0.1179 32 1 -1.1330 -4.3169 1.2945 33 1 0.2847 -3.9412 2.3309 34 1 2.3238 -6.2609 0.5770 35 1 1.5245 -5.7914 2.1149 36 1 -0.5189 -6.9207 1.5397 37 1 0.6879 -8.0209 0.8069 38 1 -2.7178 -8.1642 0.3880 39 1 -1.1833 -8.5109 1.1983 40 1 -1.6451 -10.8495 1.3195 41 1 -3.1542 -10.0518 1.7259 42 1 -3.3579 -12.0023 0.1093 43 1 -4.1451 -10.4919 -0.3719 44 1 -1.4992 -12.8102 -1.0503 45 1 -0.8515 -11.9419 -2.4493 46 1 -0.3302 -11.4169 0.4973 47 1 0.8100 -11.7718 -0.7877 48 1 0.7203 -9.3371 -0.0047 49 1 0.6638 -9.6311 -1.7486 50 1 -1.6330 -9.6616 -2.8962 51 1 -3.0481 -9.0453 -2.0056 52 1 0.6212 -5.1865 -1.7407 53 1 -0.9168 -4.7314 -0.9556 54 1 2.7778 -3.8882 0.5401 55 1 2.1053 -3.8458 -1.1137 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041399584.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:46 Heat of formation + Delta-G solvation = -19.603957 kcal Electronic energy + Delta-G solvation = -33088.880568 eV Core-core repulsion = 29125.016791 eV Total energy + Delta-G solvation = -3963.863777 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.43725 -40.93706 -39.37270 -37.29663 -34.99058 -34.09218 -34.00179 -32.10862 -31.74415 -30.71067 -29.88054 -27.57112 -27.38047 -26.03211 -24.82153 -24.20518 -23.21241 -22.41537 -22.28558 -20.55444 -20.23267 -19.51469 -18.81064 -17.84155 -17.14123 -16.83357 -16.81284 -16.60241 -16.10598 -15.95543 -15.71471 -15.57976 -15.48864 -14.71166 -14.62131 -14.29493 -14.14916 -14.10502 -13.88841 -13.80998 -13.52805 -13.49088 -13.35743 -13.18485 -13.01930 -12.91750 -12.72631 -12.56022 -12.46948 -12.43519 -12.08255 -12.00695 -11.89056 -11.86273 -11.82894 -11.65806 -11.59367 -11.41146 -11.23398 -10.72797 -10.68886 -10.67637 -9.72028 -9.00516 -8.85438 -7.90916 -5.26737 1.44208 1.45430 1.52791 1.55440 1.87398 2.47872 3.00084 3.24148 3.31507 3.48975 3.53678 3.57756 3.62969 3.65410 3.75613 3.96381 3.99870 4.07673 4.17765 4.22041 4.23779 4.25705 4.35606 4.38389 4.44070 4.54376 4.58354 4.63036 4.66783 4.68311 4.74269 4.84058 4.88291 4.91866 4.95387 4.99319 5.01119 5.02179 5.03425 5.07182 5.11650 5.12602 5.15711 5.23659 5.26498 5.31172 5.34236 5.44020 5.49116 5.57302 5.70504 6.15317 6.18164 6.41136 6.49002 7.05654 7.06017 7.73601 8.41538 9.21615 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.002407 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.710791 B =11630.643936 C =11697.950010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.624 5.624 10 C 0.179 3.821 11 C -0.110 4.110 12 C -0.068 4.068 13 C -0.108 4.108 14 C 0.094 3.906 15 N -0.610 5.610 16 C 0.527 3.473 17 O -0.592 6.592 18 C -0.086 4.086 19 C -0.112 4.112 20 C -0.145 4.145 21 C 0.061 3.939 22 N -0.552 5.552 23 C 0.062 3.938 24 C -0.144 4.144 25 C -0.103 4.103 26 C 0.096 3.904 27 C 0.133 3.867 28 C 0.146 3.854 29 H 0.248 0.752 30 H 0.027 0.973 31 H -0.012 1.012 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.047 0.953 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.044 0.956 53 H 0.041 0.959 54 H 0.048 0.952 55 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 -29.167 7.330 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.148 4.148 12 C -0.070 4.070 13 C -0.146 4.146 14 C -0.027 4.027 15 N -0.342 5.342 16 C 0.317 3.683 17 O -0.472 6.472 18 C -0.091 4.091 19 C -0.150 4.150 20 C -0.183 4.183 21 C -0.066 4.066 22 N -0.273 5.273 23 C -0.066 4.066 24 C -0.183 4.183 25 C -0.141 4.141 26 C -0.033 4.033 27 C 0.010 3.990 28 C 0.021 3.979 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.006 0.994 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.078 0.922 52 H 0.063 0.937 53 H 0.060 0.940 54 H 0.065 0.935 55 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -2.107 -29.070 6.363 29.833 hybrid contribution 0.552 2.464 -0.407 2.558 sum -1.555 -26.606 5.956 27.308 Atomic orbital electron populations 1.70170 1.06546 1.25510 1.57469 1.25733 0.96452 1.01323 1.02306 0.85084 0.78024 0.79125 0.77214 1.21661 1.21851 1.18949 1.19395 0.91538 0.84145 1.42303 0.90322 1.44915 1.12959 1.01101 1.76025 1.21194 0.85236 0.93654 0.94505 1.22711 0.99033 0.94520 0.98548 1.21343 0.95495 0.95525 0.94598 1.22765 0.97884 0.91375 1.02583 1.23082 0.96566 1.00453 0.82590 1.48744 1.57024 1.09705 1.18775 1.21299 0.75896 0.87528 0.83619 1.90679 1.55190 1.79345 1.21975 1.21180 0.99100 0.89520 0.99252 1.21603 1.00306 0.98855 0.94228 1.21947 1.01822 0.95430 0.99142 1.21888 0.96198 1.01731 0.86825 1.60227 1.25023 1.10821 1.31220 1.21869 0.88042 0.96510 1.00161 1.21933 1.00742 0.93563 1.02032 1.21413 0.93871 0.96100 1.02695 1.21576 0.97265 0.88452 0.96056 1.21561 0.98486 0.81535 0.97455 1.21291 0.95399 0.84338 0.96845 0.94342 0.95465 0.99371 0.90573 0.89405 0.89566 0.86997 0.89093 0.87266 0.93469 0.88847 0.89498 0.90453 0.88876 0.91864 0.88853 0.91753 0.89463 0.90340 0.89540 0.93385 0.91839 0.92193 0.93709 0.94018 0.93456 0.97296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.50 10.84 21.65 0.23 -58.27 16 2 C -0.06 -3.75 5.39 84.86 0.46 -3.29 16 3 Si 0.98 46.37 29.56 68.60 2.03 48.40 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.24 -13.93 10.22 84.03 0.86 -13.07 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.26 16 9 N -0.62 -32.33 3.41 -693.06 -2.36 -34.69 16 10 C 0.18 8.86 5.35 86.92 0.46 9.32 16 11 C -0.11 -3.75 5.85 31.56 0.18 -3.56 16 12 C -0.07 -2.16 0.61 -51.87 -0.03 -2.19 16 13 C -0.11 -2.18 5.94 31.65 0.19 -1.99 16 14 C 0.09 1.63 4.84 87.02 0.42 2.05 16 15 N -0.61 -16.49 3.31 -811.29 -2.68 -19.17 16 16 C 0.53 15.50 6.46 87.91 0.57 16.06 16 17 O -0.59 -23.42 16.26 -3.02 -0.05 -23.46 16 18 C -0.09 -1.70 0.43 -52.98 -0.02 -1.72 16 19 C -0.11 -1.70 4.17 30.14 0.13 -1.57 16 20 C -0.14 -1.48 5.14 30.08 0.15 -1.32 16 21 C 0.06 0.76 5.77 86.25 0.50 1.25 16 22 N -0.55 -9.07 4.79 -902.27 -4.32 -13.39 16 23 C 0.06 0.75 5.77 86.25 0.50 1.25 16 24 C -0.14 -1.43 5.12 30.05 0.15 -1.28 16 25 C -0.10 -1.56 4.49 30.13 0.14 -1.42 16 26 C 0.10 2.14 4.24 86.43 0.37 2.51 16 27 C 0.13 4.61 6.03 86.14 0.52 5.13 16 28 C 0.15 5.93 6.51 86.14 0.56 6.49 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.03 1.49 7.22 -2.39 -0.02 1.48 16 31 H -0.01 -0.66 7.97 -2.39 -0.02 -0.68 16 32 H 0.08 2.37 7.94 -2.39 -0.02 2.35 16 33 H 0.09 2.64 7.82 -2.39 -0.02 2.62 16 34 H 0.09 1.63 8.09 -2.38 -0.02 1.61 16 35 H 0.11 1.78 7.78 -2.39 -0.02 1.76 16 36 H 0.09 1.32 7.00 -2.39 -0.02 1.30 16 37 H 0.11 1.29 4.52 -2.38 -0.01 1.28 16 38 H 0.05 0.90 8.14 -2.01 -0.02 0.88 16 39 H 0.09 1.11 4.49 -2.02 -0.01 1.10 16 40 H 0.09 0.62 5.68 -2.54 -0.01 0.61 16 41 H 0.08 0.65 8.27 -1.56 -0.01 0.64 16 42 H 0.09 0.81 8.10 -2.07 -0.02 0.79 16 43 H 0.06 0.90 8.20 -2.04 -0.02 0.88 16 44 H 0.09 0.79 8.10 -2.03 -0.02 0.77 16 45 H 0.06 0.89 8.20 -2.04 -0.02 0.87 16 46 H 0.09 0.61 5.71 -2.53 -0.01 0.59 16 47 H 0.08 0.62 8.27 -1.53 -0.01 0.61 16 48 H 0.09 1.03 5.22 -2.01 -0.01 1.02 16 49 H 0.05 0.91 8.14 -2.01 -0.02 0.89 16 50 H 0.06 1.67 7.96 -2.45 -0.02 1.65 16 51 H 0.06 1.56 8.13 -2.45 -0.02 1.54 16 52 H 0.04 1.76 7.44 -2.39 -0.02 1.74 16 53 H 0.04 1.68 7.78 -2.39 -0.02 1.66 16 54 H 0.05 1.76 7.87 -2.38 -0.02 1.74 16 55 H 0.01 0.39 7.41 -2.39 -0.02 0.38 16 Total: -1.00 -76.55 389.39 -0.15 -76.70 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.90 Total: 11.23 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.10 Total: 12.65 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -9.13 Total: -125.52 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.55 -0.15 -76.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041399584.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.099 kcal (2) G-P(sol) polarization free energy of solvation -76.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds