Wall clock time and date at job start Wed Apr 1 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48508 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46992 * 299.98964 * 3 2 1 6 6 H 1.48498 * 109.47524 * 59.99296 * 3 2 1 7 7 C 1.38809 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.47574 * 125.67323 * 0.03495 * 9 7 2 11 11 C 1.55215 * 105.02812 * 203.79409 * 10 9 7 12 12 C 1.53493 * 101.39224 * 324.67615 * 11 10 9 13 13 C 1.53467 * 111.82370 * 155.69975 * 12 11 10 14 14 C 1.54628 * 102.74618 * 87.16176 * 13 12 11 15 15 N 1.47164 * 107.34137 * 20.65618 * 14 13 12 16 16 C 1.34776 * 125.59605 * 180.87595 * 15 14 13 17 17 O 1.21281 * 119.99654 * 184.52899 * 16 15 14 18 18 C 1.50699 * 120.00010 * 4.54244 * 16 15 14 19 19 H 1.08993 * 109.47490 * 18.57008 * 18 16 15 20 20 C 1.53000 * 109.46659 * 258.56412 * 18 16 15 21 21 C 1.53006 * 117.49374 * 124.19587 * 20 18 16 22 22 C 1.53004 * 60.00060 * 252.50905 * 21 20 18 23 23 N 1.46901 * 109.47081 * 138.57060 * 18 16 15 24 24 C 1.47894 * 111.00053 * 294.99499 * 23 18 16 25 25 C 1.53994 * 107.22803 * 214.25202 * 24 23 18 26 26 C 1.54590 * 105.13872 * 1.13044 * 25 24 23 27 27 C 1.48815 * 111.18499 * 177.65749 * 23 18 16 28 28 C 1.47747 * 108.80002 * 1.14901 * 15 14 13 29 29 C 1.47450 * 125.67856 * 180.02562 * 9 7 2 30 30 H 0.97004 * 119.99857 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.33417 * 322.68555 * 10 9 7 32 32 H 1.09004 * 110.32717 * 84.81070 * 10 9 7 33 33 H 1.08999 * 111.04360 * 206.64255 * 11 10 9 34 34 H 1.09006 * 111.03419 * 82.70167 * 11 10 9 35 35 H 1.08993 * 110.75719 * 328.84782 * 13 12 11 36 36 H 1.09001 * 110.91422 * 205.54699 * 13 12 11 37 37 H 1.08999 * 109.87290 * 261.21744 * 14 13 12 38 38 H 1.09000 * 109.98557 * 140.15740 * 14 13 12 39 39 H 1.08997 * 115.55604 * 269.90074 * 20 18 16 40 40 H 1.08998 * 117.49896 * 359.97438 * 21 20 18 41 41 H 1.08994 * 117.50198 * 145.02565 * 21 20 18 42 42 H 1.08994 * 117.49975 * 252.51608 * 22 21 20 43 43 H 1.09001 * 117.51928 * 107.47440 * 22 21 20 44 44 H 1.09003 * 109.91745 * 94.80340 * 24 23 18 45 45 H 1.08997 * 109.92127 * 333.71219 * 24 23 18 46 46 H 1.09005 * 110.30634 * 120.04403 * 25 24 23 47 47 H 1.08998 * 110.31064 * 242.20710 * 25 24 23 48 48 H 1.09004 * 110.72560 * 140.31180 * 26 25 24 49 49 H 1.09005 * 110.72585 * 263.41443 * 26 25 24 50 50 H 1.08994 * 110.51561 * 41.07037 * 27 23 18 51 51 H 1.08997 * 110.84269 * 278.09159 * 27 23 18 52 52 H 1.09002 * 110.39684 * 96.22501 * 28 15 14 53 53 H 1.09002 * 110.39491 * 218.62788 * 28 15 14 54 54 H 1.08998 * 109.99629 * 58.47800 * 29 9 7 55 55 H 1.09006 * 110.02714 * 297.16997 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1430 -2.5340 -0.0007 11 6 -0.4084 -3.9384 0.6046 12 6 0.7837 -4.7349 0.0566 13 6 1.1114 -5.9491 0.9362 14 6 0.1871 -7.0469 0.3604 15 7 -0.1840 -6.6369 -1.0034 16 6 -0.9951 -7.3206 -1.8348 17 8 -1.1682 -6.9303 -2.9699 18 6 -1.6870 -8.5700 -1.3537 19 1 -1.6897 -8.5872 -0.2639 20 6 -0.9448 -9.7993 -1.8816 21 6 -0.4585 -10.8253 -0.8559 22 6 0.5473 -9.9145 -1.5630 23 7 -3.0707 -8.5842 -1.8470 24 6 -3.8536 -7.4746 -1.2612 25 6 -5.2946 -7.9836 -1.0715 26 6 -5.2714 -9.4513 -1.5565 27 6 -3.7738 -9.8311 -1.4403 28 6 0.4837 -5.3561 -1.3139 29 6 1.9328 -3.7317 0.0016 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6008 -1.7622 0.6180 32 1 -0.5280 -2.4800 -1.0191 33 1 -1.3519 -4.3481 0.2439 34 1 -0.3892 -3.9049 1.6939 35 1 0.8680 -5.7473 1.9793 36 1 2.1587 -6.2328 0.8333 37 1 -0.7076 -7.1385 0.9761 38 1 0.7150 -8.0001 0.3299 39 1 -1.2837 -10.1744 -2.8473 40 1 -0.6670 -10.6241 0.1949 41 1 -0.4774 -11.8755 -1.1466 42 1 1.1898 -10.3657 -2.3190 43 1 1.0001 -9.1142 -0.9778 44 1 -3.8480 -6.6191 -1.9366 45 1 -3.4306 -7.1896 -0.2980 46 1 -5.5768 -7.9371 -0.0197 47 1 -5.9859 -7.3963 -1.6758 48 1 -5.8805 -10.0814 -0.9083 49 1 -5.6110 -9.5215 -2.5899 50 1 -3.5221 -10.0938 -0.4129 51 1 -3.5313 -10.6511 -2.1162 52 1 1.4080 -5.5330 -1.8639 53 1 -0.1819 -4.7095 -1.8858 54 1 2.5736 -3.8504 0.8753 55 1 2.5134 -3.8797 -0.9090 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041504827.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:26 Heat of formation + Delta-G solvation = 16.398175 kcal Electronic energy + Delta-G solvation = -32699.900091 eV Core-core repulsion = 28737.597484 eV Total energy + Delta-G solvation = -3962.302607 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.87424 -40.51887 -39.03136 -37.82984 -37.20794 -34.49852 -33.06181 -32.11890 -30.77930 -29.99501 -29.79222 -28.31447 -26.94208 -25.54559 -23.70567 -23.38451 -22.69332 -22.31483 -22.09658 -21.30359 -20.32285 -19.76557 -18.86996 -18.30328 -17.69018 -16.90406 -16.86220 -16.71664 -16.57889 -15.99016 -15.64546 -15.49704 -15.20385 -14.82450 -14.74145 -14.47167 -14.15427 -14.01448 -13.77490 -13.62214 -13.49131 -13.38963 -13.13010 -13.10549 -12.96388 -12.84683 -12.72261 -12.52657 -12.33535 -12.26323 -12.13244 -12.08088 -11.99675 -11.83223 -11.60520 -11.52180 -11.47219 -11.43349 -11.26869 -11.17924 -10.76409 -10.57684 -9.69986 -9.42887 -8.90249 -7.78326 -5.22705 1.45319 1.46677 1.51689 1.56859 1.80652 2.48675 2.73756 2.93469 3.28525 3.38740 3.50111 3.58368 3.67194 3.70251 3.74987 3.81536 3.90472 3.92393 3.96245 4.06893 4.14389 4.22287 4.26814 4.33761 4.35487 4.44471 4.55733 4.57979 4.59177 4.64216 4.69352 4.71927 4.82751 4.88247 4.89812 4.94725 4.95814 4.97803 5.01616 5.02683 5.05962 5.16417 5.20079 5.22797 5.25185 5.27770 5.29209 5.34428 5.46116 5.58422 5.79308 5.83117 5.92688 6.28161 6.50701 7.08963 7.14028 7.76695 8.41183 9.24111 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002727 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.056758 B =10266.230570 C =11273.949802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.297 1.297 6 H -0.289 1.289 7 C -0.234 4.234 8 H 0.084 0.916 9 N -0.626 5.626 10 C 0.158 3.842 11 C -0.108 4.108 12 C -0.070 4.070 13 C -0.105 4.105 14 C 0.098 3.902 15 N -0.615 5.615 16 C 0.531 3.469 17 O -0.576 6.576 18 C 0.111 3.889 19 H 0.079 0.921 20 C -0.159 4.159 21 C -0.140 4.140 22 C -0.188 4.188 23 N -0.520 5.520 24 C 0.032 3.968 25 C -0.125 4.125 26 C -0.118 4.118 27 C 0.043 3.957 28 C 0.133 3.867 29 C 0.148 3.852 30 H 0.245 0.755 31 H 0.071 0.929 32 H -0.029 1.029 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.090 0.910 52 H 0.065 0.935 53 H 0.037 0.963 54 H 0.048 0.952 55 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -27.694 5.181 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.224 1.224 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.102 0.898 9 N -0.352 5.352 10 C 0.032 3.968 11 C -0.146 4.146 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.023 4.023 15 N -0.349 5.349 16 C 0.320 3.680 17 O -0.454 6.454 18 C -0.001 4.001 19 H 0.096 0.904 20 C -0.178 4.178 21 C -0.177 4.177 22 C -0.225 4.225 23 N -0.246 5.246 24 C -0.096 4.096 25 C -0.164 4.164 26 C -0.156 4.156 27 C -0.083 4.083 28 C 0.010 3.990 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.089 0.911 32 H -0.011 1.011 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.116 0.884 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.108 0.892 52 H 0.083 0.917 53 H 0.056 0.944 54 H 0.066 0.934 55 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -5.417 -27.287 3.966 28.101 hybrid contribution 0.318 1.911 -0.044 1.938 sum -5.099 -25.376 3.922 26.178 Atomic orbital electron populations 1.70085 1.06340 1.24832 1.58898 1.25657 0.96604 1.01108 1.02933 0.84974 0.78204 0.79331 0.76613 1.18839 1.22427 1.21620 1.19518 0.91094 0.83689 1.42039 0.89810 1.44952 1.02419 1.01082 1.86756 1.21711 0.84338 0.95030 0.95681 1.22568 0.96441 0.95228 1.00391 1.21420 0.96036 0.95184 0.94517 1.22488 1.00790 0.91193 0.99794 1.22459 0.99687 0.99069 0.81119 1.48758 1.47066 1.22544 1.16554 1.20741 0.78139 0.84809 0.84333 1.90674 1.63875 1.69974 1.20860 1.21262 0.89775 0.91044 0.97989 0.90375 1.21976 0.97181 0.97033 1.01648 1.23190 1.00392 0.96560 0.97536 1.23178 0.91389 1.03610 1.04354 1.64569 0.99680 1.04100 1.56244 1.22832 0.95186 0.94445 0.97120 1.22376 0.94289 0.97233 1.02454 1.22492 0.95558 0.95249 1.02325 1.23319 0.93241 0.91583 1.00197 1.21824 0.96315 0.84218 0.96664 1.21203 0.94088 0.83905 0.98543 0.94499 0.91092 1.01137 0.91990 0.90183 0.87835 0.88518 0.89959 0.88554 0.87709 0.87044 0.86675 0.88229 0.88569 0.93710 0.93852 0.89730 0.91183 0.88420 0.91272 0.91968 0.89190 0.91662 0.94409 0.93421 0.96150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.27 10.10 21.65 0.22 -58.05 16 2 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 3 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.23 -13.27 10.28 84.03 0.86 -12.40 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -32.53 3.41 -693.15 -2.37 -34.90 16 10 C 0.16 8.05 5.83 86.93 0.51 8.56 16 11 C -0.11 -3.99 5.98 31.52 0.19 -3.80 16 12 C -0.07 -2.26 0.61 -51.84 -0.03 -2.29 16 13 C -0.10 -2.16 5.84 31.31 0.18 -1.97 16 14 C 0.10 1.80 5.89 86.81 0.51 2.31 16 15 N -0.62 -17.13 3.33 -812.91 -2.71 -19.83 16 16 C 0.53 16.45 5.62 87.66 0.49 16.94 16 17 O -0.58 -24.15 17.18 -3.03 -0.05 -24.20 16 18 C 0.11 2.44 1.56 44.17 0.07 2.51 16 19 H 0.08 1.37 6.27 -2.39 -0.01 1.36 16 20 C -0.16 -2.88 4.37 -10.79 -0.05 -2.92 16 21 C -0.14 -1.45 10.18 30.60 0.31 -1.14 16 22 C -0.19 -2.91 9.78 30.60 0.30 -2.61 16 23 N -0.52 -12.06 4.93 -861.50 -4.24 -16.31 16 24 C 0.03 0.76 6.00 86.45 0.52 1.28 16 25 C -0.13 -2.10 6.93 31.47 0.22 -1.88 16 26 C -0.12 -1.59 7.06 31.80 0.22 -1.37 16 27 C 0.04 0.65 5.74 86.59 0.50 1.14 16 28 C 0.13 4.57 5.76 86.28 0.50 5.07 16 29 C 0.15 5.87 6.51 86.08 0.56 6.43 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.07 4.11 5.89 -2.39 -0.01 4.10 16 32 H -0.03 -1.69 8.14 -2.38 -0.02 -1.71 16 33 H 0.06 2.22 8.01 -2.39 -0.02 2.20 16 34 H 0.08 2.71 7.85 -2.38 -0.02 2.70 16 35 H 0.10 1.83 7.80 -2.39 -0.02 1.81 16 36 H 0.10 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.08 1.26 7.66 -2.39 -0.02 1.24 16 38 H 0.10 1.26 5.79 -2.39 -0.01 1.25 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.11 0.82 8.03 -2.39 -0.02 0.81 16 41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.10 1.53 5.41 -2.39 -0.01 1.52 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.04 0.99 7.65 -2.39 -0.02 0.97 16 46 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.06 0.73 8.02 -2.39 -0.02 0.71 16 51 H 0.09 1.24 7.97 -2.39 -0.02 1.23 16 52 H 0.07 2.23 7.80 -2.39 -0.02 2.22 16 53 H 0.04 1.62 7.95 -2.39 -0.02 1.60 16 54 H 0.05 1.75 7.89 -2.39 -0.02 1.73 16 55 H 0.02 0.83 7.62 -2.38 -0.02 0.81 16 Total: -1.00 -77.52 414.35 0.06 -77.47 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.85 Total: 17.11 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 6.33 Total: 10.22 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -9.10 Total: -129.09 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -77.52 0.06 -77.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041504827.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.866 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds