Wall clock time and date at job start Wed Apr 1 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00338 * 2 1 4 4 H 1.48498 * 109.47321 * 239.99912 * 3 2 1 5 5 H 1.48507 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47517 * 119.99752 * 3 2 1 7 7 C 1.38814 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00485 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64749 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.39983 * 181.10549 * 10 9 7 12 12 C 1.55159 * 102.94134 * 22.11770 * 11 10 9 13 13 H 1.08989 * 111.00739 * 82.61006 * 12 11 10 14 14 N 1.46909 * 110.99880 * 206.42515 * 12 11 10 15 15 C 1.46896 * 110.99688 * 304.29879 * 14 12 11 16 16 C 1.53250 * 109.33662 * 172.75300 * 15 14 12 17 17 N 1.47077 * 108.52024 * 53.82829 * 16 15 14 18 18 C 1.34776 * 120.87818 * 128.79884 * 17 16 15 19 19 O 1.21279 * 119.99883 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00192 * 0.02562 * 18 17 16 21 21 C 1.52999 * 109.47021 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.36124 * 305.00524 * 21 20 18 23 23 C 1.50068 * 109.35460 * 64.72698 * 21 20 18 24 24 C 1.29261 * 124.21949 * 137.49080 * 23 21 20 25 25 C 1.50074 * 124.01599 * 359.26420 * 24 23 21 26 26 C 1.53019 * 110.14453 * 17.26219 * 25 24 23 27 27 C 1.53029 * 109.35580 * 185.27686 * 21 20 18 28 28 C 1.47084 * 118.23859 * 308.81565 * 17 16 15 29 29 C 1.46900 * 110.99507 * 179.97438 * 14 12 11 30 30 C 1.47743 * 125.82120 * 179.97438 * 9 7 2 31 31 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.88367 * 61.61048 * 10 9 7 33 33 H 1.09000 * 109.88319 * 300.59666 * 10 9 7 34 34 H 1.09004 * 110.71964 * 140.48013 * 11 10 9 35 35 H 1.08995 * 110.72102 * 263.57296 * 11 10 9 36 36 H 1.08997 * 109.49400 * 292.70587 * 15 14 12 37 37 H 1.08994 * 109.49873 * 52.78944 * 15 14 12 38 38 H 1.08999 * 109.62400 * 294.11999 * 16 15 14 39 39 H 1.08999 * 109.79013 * 173.63673 * 16 15 14 40 40 H 1.09001 * 109.47048 * 300.00506 * 20 18 17 41 41 H 1.09007 * 109.46824 * 60.00449 * 20 18 17 42 42 H 1.07999 * 117.96784 * 317.31052 * 23 21 20 43 43 H 1.08002 * 118.02051 * 179.42145 * 24 23 21 44 44 H 1.08997 * 109.35369 * 257.06147 * 25 24 23 45 45 H 1.08994 * 109.24807 * 137.40075 * 25 24 23 46 46 H 1.09005 * 109.64239 * 190.87623 * 26 25 24 47 47 H 1.08999 * 109.81633 * 70.35827 * 26 25 24 48 48 H 1.08995 * 109.64264 * 310.04503 * 27 21 20 49 49 H 1.08998 * 109.63886 * 70.67872 * 27 21 20 50 50 H 1.09001 * 109.62460 * 291.47553 * 28 17 16 51 51 H 1.08999 * 109.78763 * 170.99470 * 28 17 16 52 52 H 1.08996 * 109.49689 * 307.21319 * 29 14 12 53 53 H 1.09003 * 109.49509 * 67.26437 * 29 14 12 54 54 H 1.09003 * 110.29227 * 37.02208 * 30 9 7 55 55 H 1.08996 * 110.53057 * 274.75420 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4520 -4.0434 0.0283 12 6 0.8472 -4.6576 0.6133 13 1 0.8525 -4.5970 1.7015 14 7 1.0215 -6.0458 0.1651 15 6 -0.1530 -6.8600 0.5051 16 6 -0.0120 -8.2457 -0.1341 17 7 1.2804 -8.8182 0.2720 18 6 1.3535 -10.0567 0.7985 19 8 2.4277 -10.5130 1.1284 20 6 0.1004 -10.8746 0.9774 21 6 0.4591 -12.2297 1.5904 22 1 1.2133 -12.7174 0.9728 23 6 1.0064 -12.0214 2.9721 24 6 0.6996 -12.7520 3.9933 25 6 -0.2614 -13.9036 3.9433 26 6 -0.4772 -14.3474 2.4949 27 6 -0.7932 -13.1072 1.6493 28 6 2.4910 -8.0032 0.0886 29 6 2.2518 -6.6270 0.7186 30 6 1.9306 -3.7359 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5537 -2.0846 -0.9028 33 1 -0.5585 -2.0496 0.8812 34 1 -1.3022 -4.2479 0.6790 35 1 -0.6395 -4.4175 -0.9781 36 1 -0.2221 -6.9643 1.5879 37 1 -1.0533 -6.3752 0.1278 38 1 -0.0468 -8.1533 -1.2196 39 1 -0.8216 -8.8923 0.2045 40 1 -0.5863 -10.3471 1.6394 41 1 -0.3747 -11.0280 0.0084 42 1 1.7039 -11.2109 3.1237 43 1 1.1609 -12.5181 4.9415 44 1 -1.2150 -13.5973 4.3732 45 1 0.1443 -14.7353 4.5194 46 1 -1.3122 -15.0464 2.4464 47 1 0.4253 -14.8281 2.1173 48 1 -1.6100 -12.5497 2.1076 49 1 -1.0742 -13.4127 0.6415 50 1 2.6968 -7.8877 -0.9755 51 1 3.3383 -8.4864 0.5750 52 1 3.0951 -5.9733 0.4960 53 1 2.1498 -6.7341 1.7985 54 1 2.8301 -3.7465 0.6161 55 1 2.1644 -4.0500 -1.0167 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046038812.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:16 Heat of formation + Delta-G solvation = -9.589248 kcal Electronic energy + Delta-G solvation = -31166.950623 eV Core-core repulsion = 27203.521117 eV Total energy + Delta-G solvation = -3963.429506 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.44803 -40.12740 -39.13162 -37.96123 -35.57864 -33.99509 -33.58767 -32.27657 -31.86500 -30.94783 -29.70974 -28.23269 -27.23644 -25.83331 -24.68257 -23.47474 -23.03764 -22.16576 -21.74697 -21.13296 -19.82552 -18.90498 -18.83536 -18.22329 -17.15923 -16.93482 -16.79833 -16.60801 -16.36408 -15.96870 -15.88980 -15.47810 -15.09151 -14.93990 -14.89790 -14.51215 -14.16502 -13.95710 -13.85971 -13.75072 -13.54515 -13.45962 -13.37761 -13.17832 -12.96910 -12.90362 -12.72380 -12.58416 -12.37461 -12.36458 -12.23794 -12.02266 -11.82055 -11.69629 -11.65206 -11.57866 -11.50213 -11.36669 -11.02240 -10.69861 -10.61976 -9.87920 -9.79242 -9.28098 -8.90063 -7.85068 -5.20727 1.42993 1.45336 1.48699 1.54927 1.65500 1.98465 2.47575 2.80160 3.33350 3.50264 3.64052 3.79563 3.82138 3.82495 3.95892 3.99730 4.03152 4.12965 4.23387 4.26689 4.29940 4.35391 4.37218 4.42811 4.46318 4.54510 4.56689 4.65128 4.71498 4.73513 4.75912 4.81531 4.85446 4.88223 4.90367 4.92486 4.98412 5.04403 5.09332 5.11542 5.12370 5.20299 5.25124 5.43736 5.44244 5.46059 5.52463 5.66553 5.75956 5.81805 6.01817 6.09993 6.10764 6.21116 6.45963 7.10309 7.19137 7.76897 8.41792 9.25001 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.001815 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.965824 B =15423.239099 C =15621.515485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.185 3.815 11 C -0.114 4.114 12 C 0.088 3.912 13 H 0.037 0.963 14 N -0.526 5.526 15 C 0.036 3.964 16 C 0.115 3.885 17 N -0.615 5.615 18 C 0.509 3.491 19 O -0.583 6.583 20 C -0.126 4.126 21 C -0.040 4.040 22 H 0.068 0.932 23 C -0.151 4.151 24 C -0.167 4.167 25 C -0.090 4.090 26 C -0.121 4.121 27 C -0.111 4.111 28 C 0.123 3.877 29 C 0.047 3.953 30 C 0.147 3.853 31 H 0.247 0.753 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.083 0.917 53 H 0.026 0.974 54 H 0.033 0.967 55 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 -29.605 2.709 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.356 5.356 10 C 0.059 3.941 11 C -0.153 4.153 12 C -0.021 4.021 13 H 0.055 0.945 14 N -0.251 5.251 15 C -0.092 4.092 16 C -0.007 4.007 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.463 6.463 20 C -0.165 4.165 21 C -0.059 4.059 22 H 0.086 0.914 23 C -0.170 4.170 24 C -0.185 4.185 25 C -0.127 4.127 26 C -0.159 4.159 27 C -0.148 4.148 28 C 0.000 4.000 29 C -0.082 4.082 30 C 0.021 3.979 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.100 0.900 52 H 0.102 0.898 53 H 0.044 0.956 54 H 0.051 0.949 55 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.253 -29.628 2.376 30.184 hybrid contribution 0.901 1.772 1.100 2.272 sum -4.352 -27.856 3.476 28.408 Atomic orbital electron populations 1.70174 1.06209 1.25357 1.58164 1.25657 0.96688 1.00992 1.02595 0.85144 0.77154 0.78778 0.78196 1.20308 1.21874 1.20391 1.19405 0.90953 0.83730 1.43203 0.90197 1.44797 1.02656 1.00958 1.87146 1.20910 0.83653 0.91795 0.97710 1.22750 0.96280 0.94678 1.01574 1.22500 0.96490 0.87300 0.95831 0.94488 1.61923 1.03066 1.00701 1.59405 1.22614 0.94126 0.94003 0.98467 1.22073 0.84569 0.93079 1.00985 1.48367 1.09140 1.15232 1.62114 1.21360 0.91889 0.81334 0.75476 1.90670 1.32445 1.71321 1.51848 1.21802 0.94761 0.95100 1.04865 1.19818 0.97889 0.94636 0.93534 0.91352 1.22066 0.99858 0.99748 0.95279 1.22192 1.00074 0.98128 0.98133 1.20493 0.98436 0.95966 0.97804 1.21616 1.01993 0.97702 0.94561 1.21670 0.96050 0.95808 1.01295 1.21538 0.88034 0.88991 1.01412 1.22412 0.93648 0.95818 0.96304 1.21601 0.94434 0.84203 0.97617 0.94356 0.97377 0.97201 0.90044 0.90068 0.94932 0.87849 0.89409 0.86029 0.87155 0.85674 0.90294 0.88631 0.89968 0.90729 0.89926 0.92656 0.90581 0.89890 0.90260 0.89987 0.89818 0.95569 0.94917 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 10.31 21.65 0.22 -57.30 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.24 -13.93 10.29 84.03 0.86 -13.07 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -32.87 3.41 -691.23 -2.35 -35.22 16 10 C 0.18 9.12 5.37 86.73 0.47 9.58 16 11 C -0.11 -3.98 5.04 31.78 0.16 -3.82 16 12 C 0.09 2.94 2.72 46.29 0.13 3.07 16 13 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 14 N -0.53 -13.64 4.53 -861.98 -3.90 -17.55 16 15 C 0.04 0.70 5.43 86.39 0.47 1.16 16 16 C 0.12 1.62 6.51 86.35 0.56 2.18 16 17 N -0.62 -11.99 3.01 -817.94 -2.46 -14.46 16 18 C 0.51 10.63 7.34 87.66 0.64 11.28 16 19 O -0.58 -16.99 13.73 -3.03 -0.04 -17.03 16 20 C -0.13 -1.58 3.50 29.85 0.10 -1.48 16 21 C -0.04 -0.61 2.12 -11.73 -0.02 -0.63 16 22 H 0.07 1.29 7.95 -2.39 -0.02 1.27 16 23 C -0.15 -2.96 8.39 27.21 0.23 -2.73 16 24 C -0.17 -2.82 9.80 27.21 0.27 -2.55 16 25 C -0.09 -1.05 6.12 29.66 0.18 -0.87 16 26 C -0.12 -1.23 6.01 30.73 0.18 -1.05 16 27 C -0.11 -1.06 5.30 30.74 0.16 -0.90 16 28 C 0.12 2.78 6.59 86.34 0.57 3.35 16 29 C 0.05 1.18 5.52 86.38 0.48 1.65 16 30 C 0.15 6.08 5.96 86.78 0.52 6.60 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.01 0.44 7.51 -2.39 -0.02 0.43 16 33 H 0.01 0.54 7.37 -2.39 -0.02 0.52 16 34 H 0.08 2.43 7.96 -2.38 -0.02 2.41 16 35 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 36 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.81 6.64 -2.39 -0.02 1.80 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 0.89 6.02 -2.39 -0.01 0.87 16 40 H 0.11 1.07 7.66 -2.39 -0.02 1.05 16 41 H 0.13 0.86 8.00 -2.38 -0.02 0.84 16 42 H 0.08 2.01 6.51 -2.91 -0.02 1.99 16 43 H 0.10 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 48 H 0.08 0.62 8.10 -2.39 -0.02 0.60 16 49 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.08 2.04 7.07 -2.39 -0.02 2.02 16 52 H 0.08 2.20 7.05 -2.39 -0.02 2.18 16 53 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.03 1.34 7.88 -2.39 -0.02 1.32 16 55 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -73.00 410.89 0.75 -72.25 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.84 Total: 12.64 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.42 Total: 8.41 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -8.50 Total: -124.52 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.04 Total: -17.03 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.00 0.75 -72.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046038812.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.659 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds