Wall clock time and date at job start Wed Apr 1 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 13 13 H 1.09003 * 110.71834 * 82.69257 * 12 11 10 14 14 N 1.46896 * 110.71962 * 205.96927 * 12 11 10 15 15 C 1.46900 * 110.99894 * 299.27697 * 14 12 11 16 16 C 1.53242 * 109.33767 * 172.74736 * 15 14 12 17 17 N 1.47080 * 108.52052 * 53.83225 * 16 15 14 18 18 C 1.34783 * 120.87915 * 128.79227 * 17 16 15 19 19 O 1.21284 * 119.99389 * 180.02562 * 18 17 16 20 20 C 1.50689 * 120.00194 * 0.02562 * 18 17 16 21 21 C 1.53006 * 109.47269 * 179.97438 * 20 18 17 22 22 H 1.09000 * 109.63789 * 304.99930 * 21 20 18 23 23 C 1.53022 * 109.63793 * 65.41761 * 21 20 18 24 24 C 1.50074 * 110.14334 * 169.11868 * 23 21 20 25 25 C 1.29439 * 124.07624 * 342.87900 * 24 23 21 26 26 C 1.50073 * 124.07839 * 0.43642 * 25 24 23 27 27 C 1.52944 * 110.29937 * 343.05902 * 26 25 24 28 28 C 1.47078 * 118.23881 * 308.81379 * 17 16 15 29 29 C 1.46902 * 110.99732 * 174.97975 * 14 12 11 30 30 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 31 31 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 32 32 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 33 33 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 34 34 H 1.09001 * 111.19051 * 279.19096 * 11 10 9 35 35 H 1.08997 * 110.93832 * 155.28913 * 11 10 9 36 36 H 1.09005 * 109.49534 * 292.70337 * 15 14 12 37 37 H 1.08991 * 109.49537 * 52.79066 * 15 14 12 38 38 H 1.08994 * 109.63171 * 294.11719 * 16 15 14 39 39 H 1.09009 * 109.78661 * 173.63287 * 16 15 14 40 40 H 1.08995 * 109.47493 * 299.99808 * 20 18 17 41 41 H 1.09004 * 109.47146 * 59.99906 * 20 18 17 42 42 H 1.08993 * 109.36141 * 289.33005 * 23 21 20 43 43 H 1.08999 * 109.35817 * 49.06065 * 23 21 20 44 44 H 1.07999 * 117.96113 * 162.84279 * 24 23 21 45 45 H 1.08007 * 117.96430 * 180.46536 * 25 24 23 46 46 H 1.08997 * 109.35796 * 103.10438 * 26 25 24 47 47 H 1.09001 * 109.36222 * 222.82910 * 26 25 24 48 48 H 1.09007 * 109.43931 * 289.48339 * 27 26 25 49 49 H 1.08998 * 109.80640 * 168.88282 * 27 26 25 50 50 H 1.09004 * 109.62524 * 291.47961 * 28 17 16 51 51 H 1.09001 * 109.79262 * 170.99228 * 28 17 16 52 52 H 1.09000 * 109.49134 * 307.20916 * 29 14 12 53 53 H 1.08997 * 109.49787 * 67.29353 * 29 14 12 54 54 H 1.08999 * 109.88184 * 300.44569 * 30 9 7 55 55 H 1.09003 * 109.88022 * 61.60367 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 6 0.9848 -4.6199 -1.1784 13 1 0.2095 -5.0425 -0.5393 14 7 1.7496 -5.6837 -1.8428 15 6 0.8866 -6.4798 -2.7255 16 6 1.7490 -7.4559 -3.5329 17 7 2.5710 -8.2375 -2.5966 18 6 2.6002 -9.5836 -2.6594 19 8 3.2834 -10.2123 -1.8789 20 6 1.7843 -10.3073 -3.6991 21 6 1.9958 -11.8158 -3.5544 22 1 3.0607 -12.0428 -3.6045 23 6 1.4317 -12.2877 -2.2125 24 6 1.3903 -13.7872 -2.1679 25 6 1.4708 -14.5463 -3.2132 26 6 1.6261 -14.0334 -4.6150 27 6 1.2584 -12.5503 -4.6812 28 6 3.3597 -7.5115 -1.5897 29 6 2.4339 -6.5332 -0.8588 30 6 1.9207 -3.7004 -0.3661 31 1 -0.4850 -0.8356 0.0856 32 1 -0.6627 -2.3720 -0.7823 33 1 0.2237 -1.4797 -2.0563 34 1 1.0380 -3.5161 -3.0722 35 1 -0.6095 -4.0046 -2.5522 36 1 0.1693 -7.0393 -2.1250 37 1 0.3528 -5.8172 -3.4066 38 1 2.3957 -6.8988 -4.2107 39 1 1.1089 -8.1267 -4.1061 40 1 0.7288 -10.0732 -3.5605 41 1 2.0992 -9.9904 -4.6934 42 1 2.0644 -11.9195 -1.4050 43 1 0.4220 -11.8967 -2.0874 44 1 1.2876 -14.2625 -1.2036 45 1 1.4227 -15.6155 -3.0676 46 1 2.6609 -14.1598 -4.9334 47 1 0.9720 -14.5968 -5.2805 48 1 0.1822 -12.4372 -4.5495 49 1 1.5580 -12.1382 -5.6447 50 1 4.1612 -6.9596 -2.0807 51 1 3.7849 -8.2164 -0.8752 52 1 3.0222 -5.9091 -0.1862 53 1 1.6951 -7.0919 -0.2843 54 1 2.9412 -3.7874 -0.7390 55 1 1.8848 -3.9733 0.6886 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046051959.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:59 Heat of formation + Delta-G solvation = -13.473321 kcal Electronic energy + Delta-G solvation = -31235.466322 eV Core-core repulsion = 27271.868389 eV Total energy + Delta-G solvation = -3963.597932 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.48643 -40.25704 -39.18245 -38.09817 -35.74723 -34.09645 -33.69739 -32.35295 -31.59969 -30.92508 -29.85599 -28.28207 -27.14535 -25.90273 -24.69131 -24.07172 -22.90777 -21.97079 -21.78490 -21.14104 -19.86108 -19.62627 -18.88012 -18.21199 -17.12503 -17.02011 -16.72547 -16.58290 -16.34825 -15.96952 -15.76319 -15.51466 -15.25338 -15.04728 -14.93570 -14.89003 -14.59574 -14.11595 -13.89532 -13.83044 -13.58510 -13.51279 -13.25172 -13.13613 -12.90407 -12.74904 -12.62342 -12.59073 -12.46364 -12.43946 -12.30297 -11.92254 -11.86108 -11.78921 -11.68098 -11.61909 -11.56698 -11.42478 -11.01382 -10.64069 -10.55317 -9.87689 -9.79270 -9.32531 -9.04389 -8.34607 -5.33144 1.42127 1.57333 1.64218 1.65761 1.82255 1.95184 2.59366 2.75913 3.17892 3.48403 3.54454 3.59965 3.71833 3.81864 3.89831 3.90186 3.99784 4.09264 4.13570 4.20363 4.25168 4.31137 4.37119 4.38449 4.43909 4.49454 4.50373 4.55993 4.60054 4.71771 4.72955 4.77362 4.81167 4.81677 4.83272 4.87773 4.90437 4.94253 5.01447 5.05374 5.06604 5.09957 5.12308 5.23969 5.31883 5.37866 5.44052 5.52278 5.63702 5.79500 5.96152 6.05031 6.09372 6.30570 6.44536 6.89129 7.18393 7.69525 8.26500 8.98799 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.001803 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.948754 B =15526.863107 C =15764.271223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.079 4.079 3 Si 1.121 2.879 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.345 4.345 8 H 0.058 0.942 9 N -0.627 5.627 10 C 0.146 3.854 11 C -0.104 4.104 12 C 0.091 3.909 13 H 0.044 0.956 14 N -0.528 5.528 15 C 0.037 3.963 16 C 0.115 3.885 17 N -0.615 5.615 18 C 0.509 3.491 19 O -0.581 6.581 20 C -0.129 4.129 21 C -0.068 4.068 22 H 0.058 0.942 23 C -0.090 4.090 24 C -0.168 4.168 25 C -0.162 4.162 26 C -0.093 4.093 27 C -0.111 4.111 28 C 0.124 3.876 29 C 0.046 3.954 30 C 0.146 3.854 31 H 0.256 0.744 32 H 0.004 0.996 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.082 0.918 52 H 0.078 0.922 53 H 0.030 0.970 54 H 0.035 0.965 55 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -27.534 -14.199 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.275 4.275 3 Si 0.945 3.055 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.474 4.474 8 H 0.076 0.924 9 N -0.354 5.354 10 C 0.020 3.980 11 C -0.142 4.142 12 C -0.018 4.018 13 H 0.062 0.938 14 N -0.253 5.253 15 C -0.092 4.092 16 C -0.007 4.007 17 N -0.349 5.349 18 C 0.299 3.701 19 O -0.462 6.462 20 C -0.168 4.168 21 C -0.087 4.087 22 H 0.077 0.923 23 C -0.127 4.127 24 C -0.186 4.186 25 C -0.180 4.180 26 C -0.130 4.130 27 C -0.148 4.148 28 C 0.001 3.999 29 C -0.082 4.082 30 C 0.020 3.980 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.101 0.899 52 H 0.096 0.904 53 H 0.048 0.952 54 H 0.053 0.947 55 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 0.938 -25.955 -14.109 29.557 hybrid contribution -0.387 -1.696 1.727 2.451 sum 0.551 -27.650 -12.383 30.302 Atomic orbital electron populations 1.70841 1.07498 1.29586 1.51284 1.27134 0.96610 1.04320 0.99399 0.82791 0.74102 0.71812 0.76786 1.19961 1.21741 1.21096 1.20069 0.99139 0.89261 1.38927 0.92363 1.44813 1.31652 1.02152 1.56808 1.21529 0.88586 0.96401 0.91504 1.22776 1.01227 0.93083 0.97114 1.22345 0.93537 0.91130 0.94779 0.93777 1.61962 1.30601 1.12154 1.20599 1.22626 0.94380 0.95744 0.96405 1.22074 0.93984 0.93721 0.90966 1.48361 1.46499 1.05763 1.34234 1.21403 0.81796 0.81486 0.85374 1.90657 1.44392 1.66661 1.44461 1.21858 1.01383 0.94822 0.98785 1.20909 0.99948 0.92663 0.95166 0.92338 1.20560 1.00713 0.93040 0.98402 1.22156 1.01986 0.95871 0.98634 1.22261 1.00860 0.99652 0.95252 1.20491 1.02234 0.96252 0.94048 1.21657 1.00518 0.94471 0.98160 1.21507 0.93468 0.93463 0.91483 1.22406 0.97297 0.94520 0.94018 1.21331 0.96878 0.84328 0.95428 0.93288 0.97795 0.95769 0.90018 0.88724 0.94444 0.87710 0.89699 0.85743 0.86718 0.85968 0.92145 0.91076 0.88535 0.87433 0.90832 0.89552 0.91013 0.89548 0.90638 0.89916 0.90354 0.95165 0.94744 0.97727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 12.82 21.65 0.28 -58.74 16 2 C -0.08 -4.64 5.09 84.86 0.43 -4.21 16 3 Si 1.12 52.21 30.00 68.60 2.06 54.26 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.35 -20.20 10.05 84.03 0.84 -19.36 16 8 H 0.06 3.41 7.96 -2.91 -0.02 3.39 16 9 N -0.63 -32.77 3.33 -691.57 -2.30 -35.07 16 10 C 0.15 6.83 5.22 86.93 0.45 7.29 16 11 C -0.10 -3.41 5.39 32.06 0.17 -3.24 16 12 C 0.09 2.94 2.64 46.10 0.12 3.07 16 13 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 14 N -0.53 -13.47 4.45 -863.10 -3.84 -17.31 16 15 C 0.04 0.65 5.47 86.38 0.47 1.12 16 16 C 0.11 1.51 6.51 86.35 0.56 2.07 16 17 N -0.62 -11.62 3.01 -817.92 -2.46 -14.08 16 18 C 0.51 10.18 7.46 87.65 0.65 10.84 16 19 O -0.58 -16.51 13.51 -3.04 -0.04 -16.55 16 20 C -0.13 -1.47 3.54 29.85 0.11 -1.36 16 21 C -0.07 -0.97 1.87 -10.65 -0.02 -0.99 16 22 H 0.06 1.10 7.95 -2.39 -0.02 1.08 16 23 C -0.09 -1.61 5.05 29.66 0.15 -1.46 16 24 C -0.17 -2.85 9.81 27.04 0.27 -2.58 16 25 C -0.16 -2.27 9.81 27.04 0.27 -2.00 16 26 C -0.09 -0.97 6.11 29.63 0.18 -0.79 16 27 C -0.11 -1.02 5.31 30.71 0.16 -0.86 16 28 C 0.12 2.81 6.59 86.35 0.57 3.38 16 29 C 0.05 1.16 5.45 86.38 0.47 1.63 16 30 C 0.15 6.19 5.70 86.73 0.49 6.68 16 31 H 0.26 16.12 5.83 -92.71 -0.54 15.58 16 32 H 0.00 0.22 6.84 -2.39 -0.02 0.20 16 33 H 0.02 1.26 7.73 -2.38 -0.02 1.24 16 34 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.09 2.48 7.93 -2.39 -0.02 2.46 16 36 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.10 1.63 6.80 -2.39 -0.02 1.62 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 0.75 6.02 -2.38 -0.01 0.73 16 40 H 0.11 0.86 7.63 -2.39 -0.02 0.84 16 41 H 0.12 0.76 8.00 -2.38 -0.02 0.74 16 42 H 0.06 1.45 6.25 -2.39 -0.01 1.44 16 43 H 0.07 1.15 8.07 -2.39 -0.02 1.13 16 44 H 0.10 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.60 8.13 -2.38 -0.02 0.59 16 49 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.08 1.70 8.14 -2.38 -0.02 1.69 16 51 H 0.08 2.07 7.07 -2.39 -0.02 2.05 16 52 H 0.08 2.16 6.78 -2.39 -0.02 2.14 16 53 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.03 1.48 7.70 -2.39 -0.02 1.46 16 55 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -75.50 409.73 1.12 -74.38 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.07 Total: 13.88 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.36 Total: -0.77 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -8.33 Total: -125.20 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.04 Total: -16.55 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.06 Total: 54.26 kcal Total: -75.50 1.12 -74.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046051959.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.906 kcal (2) G-P(sol) polarization free energy of solvation -75.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds