Wall clock time and date at job start Wed Apr 1 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48506 * 109.47028 * 269.99999 * 3 2 1 5 5 H 1.48497 * 109.47387 * 30.00323 * 3 2 1 6 6 H 1.48507 * 109.46971 * 150.00312 * 3 2 1 7 7 C 1.38810 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00729 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99366 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.65166 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.27331 * 178.97933 * 10 9 7 12 12 C 1.55164 * 102.93845 * 337.80616 * 11 10 9 13 13 H 1.08998 * 111.00346 * 277.42497 * 12 11 10 14 14 N 1.46899 * 111.03225 * 153.59361 * 12 11 10 15 15 C 1.46904 * 110.99806 * 185.90308 * 14 12 11 16 16 C 1.53232 * 109.34134 * 172.74633 * 15 14 12 17 17 N 1.47078 * 108.52346 * 53.82660 * 16 15 14 18 18 C 1.34778 * 120.87799 * 128.79003 * 17 16 15 19 19 O 1.21286 * 120.00125 * 185.24362 * 18 17 16 20 20 C 1.50704 * 120.00429 * 5.24806 * 18 17 16 21 21 C 1.51844 * 108.64705 * 272.27695 * 20 18 17 22 22 C 1.53083 * 110.74258 * 172.38834 * 21 20 18 23 23 C 1.51368 * 108.59478 * 85.74883 * 22 21 20 24 24 C 1.29529 * 120.35799 * 288.08010 * 23 22 21 25 25 C 1.51373 * 120.35849 * 0.02562 * 24 23 22 26 26 C 1.51845 * 108.65265 * 148.18358 * 20 18 17 27 27 C 1.47076 * 118.24120 * 308.82233 * 17 16 15 28 28 C 1.46896 * 111.00242 * 61.60390 * 14 12 11 29 29 C 1.47430 * 125.64736 * 180.02562 * 9 7 2 30 30 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.88259 * 298.39673 * 10 9 7 32 32 H 1.09001 * 109.88300 * 59.55817 * 10 9 7 33 33 H 1.08992 * 110.72562 * 96.16896 * 11 10 9 34 34 H 1.09003 * 110.71886 * 219.45160 * 11 10 9 35 35 H 1.09004 * 109.49477 * 292.70442 * 15 14 12 36 36 H 1.08997 * 109.48952 * 52.78435 * 15 14 12 37 37 H 1.09005 * 109.62984 * 294.11738 * 16 15 14 38 38 H 1.09003 * 109.79428 * 173.63571 * 16 15 14 39 39 H 1.09004 * 108.60020 * 30.16333 * 20 18 17 40 40 H 1.08995 * 109.22509 * 292.72200 * 21 20 18 41 41 H 1.09005 * 109.22564 * 52.07192 * 21 20 18 42 42 H 1.08995 * 109.62236 * 326.01516 * 22 21 20 43 43 H 1.09006 * 109.62117 * 205.48091 * 22 21 20 44 44 H 1.08000 * 119.82298 * 108.09321 * 23 22 21 45 45 H 1.08002 * 119.82090 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.61164 * 312.15570 * 25 24 23 47 47 H 1.09006 * 109.61153 * 191.64088 * 25 24 23 48 48 H 1.08994 * 109.22096 * 307.92918 * 26 20 18 49 49 H 1.09003 * 109.22041 * 67.27384 * 26 20 18 50 50 H 1.09006 * 109.62420 * 291.47219 * 27 17 16 51 51 H 1.08993 * 109.79086 * 170.98710 * 27 17 16 52 52 H 1.09000 * 109.49458 * 307.21213 * 28 14 12 53 53 H 1.09001 * 109.49572 * 67.29396 * 28 14 12 54 54 H 1.09000 * 110.36331 * 322.93005 * 29 9 7 55 55 H 1.09004 * 110.36862 * 85.13850 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4485 -4.0441 -0.0262 12 6 0.8515 -4.6560 -0.6119 13 1 0.8556 -4.5961 -1.7002 14 7 1.0300 -6.0433 -0.1631 15 6 2.3268 -6.5759 -0.6020 16 6 2.5523 -7.9513 0.0347 17 7 1.3938 -8.8039 -0.2724 18 6 1.5599 -10.0321 -0.8020 19 8 0.5934 -10.6837 -1.1372 20 6 2.9464 -10.5959 -0.9776 21 6 3.4831 -10.1534 -2.3273 22 6 4.9567 -10.5398 -2.4780 23 6 5.0327 -11.9608 -2.9941 24 6 4.7264 -12.9548 -2.2222 25 6 4.2878 -12.7080 -0.7946 26 6 2.8819 -12.1040 -0.8127 27 6 0.0494 -8.2804 0.0131 28 6 -0.0775 -6.8919 -0.6226 29 6 1.9334 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5537 -2.0845 0.9028 32 1 -0.5582 -2.0520 -0.8827 33 1 -0.6310 -4.4182 0.9812 34 1 -1.2989 -4.2514 -0.6757 35 1 2.3318 -6.6724 -1.6877 36 1 3.1219 -5.8973 -0.2931 37 1 2.6512 -7.8431 1.1148 38 1 3.4572 -8.4026 -0.3724 39 1 3.5893 -10.1871 -0.1980 40 1 2.9041 -10.6309 -3.1178 41 1 3.3851 -9.0713 -2.4154 42 1 5.4529 -10.4751 -1.5098 43 1 5.4409 -9.8670 -3.1859 44 1 5.3444 -12.1468 -4.0112 45 1 4.7841 -13.9652 -2.5992 46 1 4.9779 -12.0142 -0.3146 47 1 4.2739 -13.6509 -0.2479 48 1 2.3773 -12.3413 0.1238 49 1 2.3182 -12.5318 -1.6417 50 1 -0.0923 -8.2038 1.0912 51 1 -0.7032 -8.9465 -0.4086 52 1 -1.0262 -6.4426 -0.3288 53 1 -0.0391 -6.9841 -1.7081 54 1 2.8326 -3.7405 -0.6165 55 1 2.1687 -4.0411 1.0177 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046084857.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:07 Heat of formation + Delta-G solvation = -5.019569 kcal Electronic energy + Delta-G solvation = -31768.192011 eV Core-core repulsion = 27804.960661 eV Total energy + Delta-G solvation = -3963.231350 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.70189 -40.14531 -38.89390 -37.98920 -35.62581 -34.05221 -33.57328 -32.76605 -32.17440 -31.01674 -29.43376 -27.80793 -26.59156 -25.82060 -24.98033 -24.61630 -22.94899 -21.80057 -21.64090 -21.07058 -19.77942 -18.92290 -18.86807 -18.42355 -17.42590 -17.12802 -16.67660 -16.49488 -16.32578 -15.96513 -15.89701 -15.52574 -15.34495 -14.87394 -14.75070 -14.52795 -14.26813 -13.99591 -13.89832 -13.83372 -13.82256 -13.49541 -13.26607 -13.22014 -12.91816 -12.75002 -12.62055 -12.54861 -12.40100 -12.25685 -12.10242 -11.99358 -11.80140 -11.77113 -11.62233 -11.57961 -11.53234 -11.47694 -11.22074 -10.74078 -10.69793 -9.88586 -9.80863 -9.28644 -8.89098 -7.83815 -5.19761 1.43176 1.46948 1.48974 1.57669 1.59820 1.92817 2.48788 2.79808 3.35296 3.38797 3.60989 3.65163 3.79192 3.86309 3.91883 4.02287 4.08902 4.10174 4.21506 4.23857 4.25421 4.27664 4.32189 4.40232 4.41994 4.49181 4.53820 4.62933 4.65586 4.70390 4.74472 4.74896 4.86559 4.88765 4.90617 4.94433 4.97373 5.01040 5.05946 5.10923 5.14774 5.21617 5.22450 5.32039 5.39701 5.46265 5.47059 5.65774 5.75834 5.84042 6.02093 6.08763 6.09103 6.21944 6.40232 7.10837 7.11768 7.78470 8.42983 9.26738 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.020367 B = 0.002128 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.470175 B =13152.461127 C =14155.168403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.239 4.239 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.187 3.813 11 C -0.117 4.117 12 C 0.088 3.912 13 H 0.038 0.962 14 N -0.525 5.525 15 C 0.037 3.963 16 C 0.114 3.886 17 N -0.612 5.612 18 C 0.513 3.487 19 O -0.586 6.586 20 C -0.095 4.095 21 C -0.100 4.100 22 C -0.086 4.086 23 C -0.167 4.167 24 C -0.165 4.165 25 C -0.086 4.086 26 C -0.093 4.093 27 C 0.120 3.880 28 C 0.047 3.953 29 C 0.149 3.851 30 H 0.246 0.754 31 H 0.007 0.993 32 H 0.008 0.992 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.052 0.948 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.092 0.908 53 H 0.026 0.974 54 H 0.042 0.958 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 -26.210 -1.795 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.368 4.368 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.022 4.022 13 H 0.056 0.944 14 N -0.250 5.250 15 C -0.091 4.091 16 C -0.008 4.008 17 N -0.345 5.345 18 C 0.303 3.697 19 O -0.467 6.467 20 C -0.116 4.116 21 C -0.138 4.138 22 C -0.123 4.123 23 C -0.185 4.185 24 C -0.183 4.183 25 C -0.123 4.123 26 C -0.131 4.131 27 C -0.003 4.003 28 C -0.081 4.081 29 C 0.024 3.976 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.101 0.899 51 H 0.102 0.898 52 H 0.111 0.889 53 H 0.044 0.956 54 H 0.060 0.940 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.651 -26.339 -1.443 28.088 hybrid contribution -0.341 1.354 -1.131 1.797 sum 9.310 -24.985 -2.574 26.787 Atomic orbital electron populations 1.70195 1.06372 1.25223 1.58431 1.25692 0.96640 1.01163 1.02767 0.85058 0.77708 0.79009 0.77437 1.21330 1.22278 1.19101 1.19468 0.91073 0.83558 1.42729 0.89684 1.44746 1.02482 1.01228 1.87086 1.20874 0.83940 0.91480 0.97579 1.22734 0.96567 0.94971 1.01330 1.22523 0.96446 0.87308 0.95878 0.94417 1.61938 1.02641 1.00537 1.59853 1.22574 0.92124 0.96675 0.97749 1.22079 0.88303 0.88419 1.02006 1.48353 1.08226 1.15743 1.62154 1.21389 0.92414 0.80519 0.75349 1.90659 1.43890 1.60456 1.51663 1.21090 0.92125 0.97408 1.00967 1.21212 0.96861 1.01119 0.94636 1.20819 0.94568 0.94239 1.02668 1.22706 1.00861 0.95121 0.99774 1.22703 1.00103 0.99084 0.96404 1.20810 0.95082 1.01824 0.94625 1.21063 0.97563 0.92462 1.01969 1.21627 0.84488 0.93076 1.01064 1.22425 0.95630 0.93070 0.97009 1.21576 0.94321 0.83901 0.97824 0.94481 0.97498 0.97324 0.90469 0.90811 0.94832 0.88484 0.89283 0.86494 0.86751 0.93001 0.90900 0.89318 0.90088 0.87189 0.87164 0.89545 0.90293 0.91956 0.92951 0.89874 0.89829 0.88950 0.95570 0.93994 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 10.31 21.65 0.22 -57.59 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.53 16 3 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.34 10.28 84.03 0.86 -12.47 16 8 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.63 -32.20 3.39 -691.98 -2.35 -34.55 16 10 C 0.19 9.31 5.37 86.73 0.47 9.77 16 11 C -0.12 -4.27 5.32 31.79 0.17 -4.11 16 12 C 0.09 2.90 2.71 46.31 0.13 3.02 16 13 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 14 N -0.52 -13.41 4.53 -861.91 -3.90 -17.32 16 15 C 0.04 0.76 5.48 86.38 0.47 1.23 16 16 C 0.11 1.73 6.12 86.35 0.53 2.25 16 17 N -0.61 -12.15 3.01 -817.94 -2.46 -14.62 16 18 C 0.51 11.25 6.60 87.66 0.58 11.83 16 19 O -0.59 -17.79 15.72 -3.05 -0.05 -17.84 16 20 C -0.09 -1.39 1.29 -12.30 -0.02 -1.40 16 21 C -0.10 -1.37 4.60 30.24 0.14 -1.23 16 22 C -0.09 -0.86 5.62 30.09 0.17 -0.69 16 23 C -0.17 -1.95 9.34 27.36 0.26 -1.70 16 24 C -0.16 -1.95 9.34 27.37 0.26 -1.69 16 25 C -0.09 -0.92 5.61 30.07 0.17 -0.75 16 26 C -0.09 -1.42 4.41 30.22 0.13 -1.28 16 27 C 0.12 2.61 6.61 86.35 0.57 3.18 16 28 C 0.05 1.11 5.48 86.38 0.47 1.59 16 29 C 0.15 5.85 5.66 86.85 0.49 6.34 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.01 0.38 7.51 -2.38 -0.02 0.36 16 32 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 2.41 7.94 -2.39 -0.02 2.39 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.10 1.94 6.81 -2.39 -0.02 1.92 16 37 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.12 1.12 5.02 -2.39 -0.01 1.10 16 39 H 0.11 1.10 6.22 -2.38 -0.01 1.08 16 40 H 0.05 0.93 7.86 -2.39 -0.02 0.91 16 41 H 0.07 0.96 7.36 -2.38 -0.02 0.94 16 42 H 0.09 0.66 6.68 -2.39 -0.02 0.65 16 43 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 45 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.09 0.70 6.68 -2.39 -0.02 0.69 16 47 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 49 H 0.05 1.04 7.74 -2.39 -0.02 1.02 16 50 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.08 2.00 7.05 -2.39 -0.02 1.98 16 52 H 0.09 2.14 6.86 -2.39 -0.02 2.12 16 53 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 54 H 0.04 1.56 7.84 -2.39 -0.02 1.54 16 55 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -71.54 405.76 0.65 -70.89 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.85 Total: 13.02 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.31 Total: 10.35 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -8.49 Total: -124.08 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.84 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.54 0.65 -70.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046084857.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.872 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds