Wall clock time and date at job start Wed Apr 1 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47191 * 300.00057 * 3 2 1 6 6 H 1.48509 * 109.47056 * 59.99529 * 3 2 1 7 7 C 1.38812 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99767 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00433 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64455 * 359.96867 * 9 7 2 11 11 C 1.54912 * 104.82894 * 155.90950 * 10 9 7 12 12 C 1.55150 * 101.58361 * 37.00921 * 11 10 9 13 13 H 1.09004 * 110.72014 * 83.03812 * 12 11 10 14 14 N 1.46900 * 110.72452 * 206.13103 * 12 11 10 15 15 C 1.46895 * 111.00278 * 179.97438 * 14 12 11 16 16 C 1.53236 * 109.34149 * 187.25954 * 15 14 12 17 17 N 1.47090 * 108.51774 * 306.16723 * 16 15 14 18 18 C 1.34773 * 120.88218 * 231.18699 * 17 16 15 19 19 O 1.21278 * 119.99879 * 5.42026 * 18 17 16 20 20 C 1.50698 * 120.00017 * 185.42111 * 18 17 16 21 21 C 1.51854 * 108.54575 * 141.27554 * 20 18 17 22 22 C 1.53069 * 110.74678 * 187.53007 * 21 20 18 23 23 C 1.51372 * 108.59746 * 274.25682 * 22 21 20 24 24 C 1.29524 * 120.35823 * 71.91768 * 23 22 21 25 25 C 1.51369 * 120.36220 * 359.97438 * 24 23 22 26 26 C 1.51845 * 108.64982 * 265.30248 * 20 18 17 27 27 C 1.47074 * 118.23255 * 51.46199 * 17 16 15 28 28 C 1.46897 * 111.00126 * 304.30590 * 14 12 11 29 29 C 1.47021 * 125.65261 * 180.02562 * 9 7 2 30 30 H 0.96997 * 119.99688 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.37134 * 37.07336 * 10 9 7 32 32 H 1.08999 * 110.37169 * 274.74697 * 10 9 7 33 33 H 1.09002 * 111.00566 * 278.93315 * 11 10 9 34 34 H 1.09000 * 111.00190 * 155.08475 * 11 10 9 35 35 H 1.08998 * 109.49203 * 67.29365 * 15 14 12 36 36 H 1.09006 * 109.51565 * 307.23272 * 15 14 12 37 37 H 1.09002 * 109.62831 * 186.46541 * 16 15 14 38 38 H 1.09000 * 109.79404 * 65.97133 * 16 15 14 39 39 H 1.09001 * 108.60570 * 23.32026 * 20 18 17 40 40 H 1.08997 * 109.22038 * 307.85752 * 21 20 18 41 41 H 1.09003 * 109.21641 * 67.19681 * 21 20 18 42 42 H 1.09001 * 109.62938 * 154.52204 * 22 21 20 43 43 H 1.09004 * 109.62404 * 33.98599 * 22 21 20 44 44 H 1.07997 * 119.81968 * 251.89956 * 23 22 21 45 45 H 1.08003 * 119.82061 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.61460 * 168.36216 * 25 24 23 47 47 H 1.08997 * 109.61445 * 47.83950 * 25 24 23 48 48 H 1.08996 * 109.21944 * 292.85841 * 26 20 18 49 49 H 1.08996 * 109.22112 * 52.24806 * 26 20 18 50 50 H 1.08999 * 109.63465 * 68.25430 * 27 17 16 51 51 H 1.09007 * 109.62697 * 188.82663 * 27 17 16 52 52 H 1.09002 * 109.48943 * 292.70358 * 28 14 12 53 53 H 1.09009 * 109.49406 * 52.78076 * 28 14 12 54 54 H 1.09009 * 109.88176 * 61.60029 * 29 9 7 55 55 H 1.09006 * 109.88187 * 300.44457 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 0.0007 11 6 -0.4016 -3.9325 -0.6106 12 6 0.7784 -4.7524 -0.0253 13 1 0.5447 -5.1002 0.9810 14 7 1.1094 -5.8847 -0.9006 15 6 2.2266 -6.6651 -0.3523 16 6 2.6583 -7.7213 -1.3752 17 7 1.4776 -8.5103 -1.7585 18 6 1.5022 -9.8572 -1.7164 19 8 2.4706 -10.4321 -1.2665 20 6 0.3264 -10.6486 -2.2283 21 6 0.8493 -11.8767 -2.9524 22 6 -0.2910 -12.6196 -3.6530 23 6 -0.9321 -13.5660 -2.6607 24 6 -1.6636 -13.1059 -1.6959 25 6 -1.8861 -11.6160 -1.5480 26 6 -0.5861 -10.9738 -1.0590 27 6 0.2715 -7.7906 -2.1948 28 6 -0.0682 -6.7311 -1.1346 29 6 1.9317 -3.7275 0.0016 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5993 -1.7591 -0.6152 32 1 -0.5273 -2.4863 1.0190 33 1 -0.3520 -3.8989 -1.6990 34 1 -1.3589 -4.3328 -0.2770 35 1 1.9098 -7.1572 0.5672 36 1 3.0646 -6.0012 -0.1393 37 1 3.4079 -8.3762 -0.9311 38 1 3.0743 -7.2332 -2.2566 39 1 -0.2243 -10.0329 -2.9394 40 1 1.5864 -11.5692 -3.6941 41 1 1.3230 -12.5435 -2.2319 42 1 0.1046 -13.1863 -4.4960 43 1 -1.0323 -11.9028 -4.0064 44 1 -0.7790 -14.6307 -2.7580 45 1 -2.1173 -13.7890 -0.9930 46 1 -2.6792 -11.4347 -0.8225 47 1 -2.1643 -11.1901 -2.5120 48 1 -0.0760 -11.6636 -0.3868 49 1 -0.8205 -10.0556 -0.5206 50 1 0.4604 -7.3062 -3.1529 51 1 -0.5577 -8.4913 -2.2930 52 1 -0.3535 -7.2224 -0.2043 53 1 -0.8945 -6.1148 -1.4892 54 1 2.5281 -3.8638 0.9039 55 1 2.5585 -3.8515 -0.8816 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046084858.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:13 Heat of formation + Delta-G solvation = -2.153145 kcal Electronic energy + Delta-G solvation = -31740.770358 eV Core-core repulsion = 27777.663305 eV Total energy + Delta-G solvation = -3963.107053 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.69804 -40.16592 -38.89587 -37.96754 -35.63579 -34.06701 -33.55106 -32.76760 -32.19261 -30.95302 -29.51375 -27.64029 -26.78811 -25.73816 -24.96451 -24.66229 -22.95207 -21.87000 -21.61741 -20.98652 -19.78030 -18.93886 -18.86852 -18.45762 -17.42359 -17.17619 -16.68502 -16.50859 -16.33000 -15.94746 -15.89334 -15.46480 -15.30929 -14.90729 -14.86498 -14.56025 -14.24375 -14.17090 -13.88879 -13.85769 -13.48712 -13.36535 -13.31654 -13.23789 -12.92071 -12.75458 -12.67028 -12.55940 -12.46991 -12.28977 -12.09435 -11.95182 -11.84063 -11.76452 -11.66960 -11.53778 -11.51892 -11.37930 -11.22350 -10.75169 -10.73378 -9.88294 -9.81158 -9.27291 -8.87721 -7.77043 -5.21085 1.42928 1.47275 1.47885 1.58379 1.60150 1.91807 2.48597 2.80131 3.33363 3.38866 3.60585 3.69299 3.76198 3.85812 3.91848 3.98138 4.09302 4.12337 4.20320 4.21487 4.25356 4.28821 4.32653 4.39937 4.42320 4.49246 4.55321 4.63507 4.67683 4.69707 4.73758 4.74575 4.85163 4.89084 4.91978 4.94500 4.99677 5.03335 5.06383 5.10662 5.12924 5.15423 5.22498 5.32385 5.38922 5.45631 5.47298 5.66068 5.81344 5.84334 6.05018 6.09137 6.10837 6.32700 6.40373 7.11291 7.12112 7.79034 8.42511 9.25076 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.002016 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.807766 B =13888.412632 C =14456.271865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.626 5.626 10 C 0.153 3.847 11 C -0.114 4.114 12 C 0.090 3.910 13 H 0.043 0.957 14 N -0.529 5.529 15 C 0.047 3.953 16 C 0.121 3.879 17 N -0.612 5.612 18 C 0.513 3.487 19 O -0.588 6.588 20 C -0.095 4.095 21 C -0.094 4.094 22 C -0.086 4.086 23 C -0.166 4.166 24 C -0.166 4.166 25 C -0.085 4.085 26 C -0.099 4.099 27 C 0.112 3.888 28 C 0.039 3.961 29 C 0.146 3.854 30 H 0.247 0.753 31 H 0.075 0.925 32 H -0.015 1.015 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.051 0.949 49 H 0.072 0.928 50 H 0.087 0.913 51 H 0.120 0.880 52 H 0.037 0.963 53 H 0.103 0.897 54 H 0.012 0.988 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -26.626 -7.646 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.028 3.972 11 C -0.152 4.152 12 C -0.018 4.018 13 H 0.061 0.939 14 N -0.254 5.254 15 C -0.081 4.081 16 C -0.002 4.002 17 N -0.345 5.345 18 C 0.303 3.697 19 O -0.468 6.468 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.184 4.184 24 C -0.184 4.184 25 C -0.122 4.122 26 C -0.137 4.137 27 C -0.010 4.010 28 C -0.089 4.089 29 C 0.020 3.980 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.003 0.997 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.138 0.862 52 H 0.055 0.945 53 H 0.121 0.879 54 H 0.030 0.970 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.298 -26.529 -7.854 28.169 hybrid contribution 0.583 0.865 1.415 1.758 sum -4.715 -25.664 -6.439 26.876 Atomic orbital electron populations 1.70044 1.06096 1.24949 1.58707 1.25621 0.96706 1.00886 1.02797 0.84982 0.78024 0.79368 0.76782 1.19308 1.21609 1.21971 1.19462 0.90941 0.83788 1.42363 0.90422 1.44757 1.02912 1.00769 1.86775 1.21738 0.83998 0.95094 0.96415 1.22885 0.96790 0.94956 1.00617 1.22371 0.95598 0.90103 0.93763 0.93887 1.61930 1.07573 1.09068 1.46866 1.22396 0.95105 0.95059 0.95570 1.21588 0.88084 0.92025 0.98463 1.48375 1.15065 1.05391 1.65641 1.21421 0.89088 0.81948 0.77228 1.90657 1.37653 1.70383 1.48081 1.21113 0.93770 0.97287 0.99405 1.21094 0.97951 0.95256 0.98919 1.20814 0.96877 0.97666 0.96941 1.22699 0.98540 0.99797 0.97315 1.22712 0.99821 0.97229 0.98671 1.20805 0.96123 0.92398 1.02916 1.21170 0.95436 1.01111 0.95978 1.22217 0.86947 0.94057 0.97762 1.22669 0.93162 0.94679 0.98433 1.21312 0.94637 0.84655 0.97384 0.94290 0.90661 0.99707 0.90836 0.89658 0.95209 0.89899 0.89929 0.90245 0.86696 0.91975 0.92931 0.90302 0.89466 0.87189 0.87155 0.90004 0.89301 0.93030 0.90953 0.89504 0.86176 0.94478 0.87869 0.97002 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.36 10.09 21.65 0.22 -56.14 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.24 -13.43 10.27 84.03 0.86 -12.57 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -32.61 3.39 -691.99 -2.35 -34.96 16 10 C 0.15 7.46 5.89 86.86 0.51 7.97 16 11 C -0.11 -3.98 5.14 31.98 0.16 -3.82 16 12 C 0.09 2.99 2.65 46.10 0.12 3.12 16 13 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 14 N -0.53 -13.96 4.45 -862.20 -3.83 -17.79 16 15 C 0.05 1.20 5.51 86.38 0.48 1.67 16 16 C 0.12 2.81 6.61 86.35 0.57 3.38 16 17 N -0.61 -12.47 3.00 -817.06 -2.45 -14.93 16 18 C 0.51 11.39 6.51 87.66 0.57 11.96 16 19 O -0.59 -18.14 15.86 -3.02 -0.05 -18.19 16 20 C -0.09 -1.37 1.34 -12.30 -0.02 -1.39 16 21 C -0.09 -1.43 4.50 30.24 0.14 -1.30 16 22 C -0.09 -0.90 5.62 30.08 0.17 -0.73 16 23 C -0.17 -1.92 9.34 27.37 0.26 -1.66 16 24 C -0.17 -1.89 9.34 27.37 0.26 -1.63 16 25 C -0.09 -0.81 5.61 30.07 0.17 -0.64 16 26 C -0.10 -1.33 4.76 30.22 0.14 -1.19 16 27 C 0.11 1.68 6.30 86.50 0.55 2.23 16 28 C 0.04 0.75 5.44 86.53 0.47 1.22 16 29 C 0.15 6.10 5.81 86.73 0.50 6.60 16 30 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.08 4.18 5.87 -2.39 -0.01 4.17 16 32 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 34 H 0.08 2.47 7.95 -2.39 -0.02 2.45 16 35 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 2.21 7.13 -2.38 -0.02 2.19 16 37 H 0.08 2.10 7.04 -2.39 -0.02 2.08 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.12 1.07 5.82 -2.39 -0.01 1.05 16 40 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 41 H 0.05 1.05 7.73 -2.39 -0.02 1.03 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 0.68 6.68 -2.38 -0.02 0.67 16 44 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.09 0.61 6.68 -2.39 -0.02 0.60 16 48 H 0.05 0.93 7.85 -2.39 -0.02 0.91 16 49 H 0.07 0.93 8.04 -2.39 -0.02 0.91 16 50 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.12 1.05 5.53 -2.38 -0.01 1.04 16 52 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.10 1.85 6.62 -2.38 -0.02 1.83 16 54 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 55 H 0.03 1.40 7.98 -2.38 -0.02 1.38 16 Total: -1.00 -71.30 406.50 0.79 -70.51 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.85 Total: 13.72 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.38 Total: 9.84 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -8.42 Total: -123.82 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -71.30 0.79 -70.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046084858.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.358 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds