Wall clock time and date at job start Wed Apr 1 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48500 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47161 * 299.99841 * 3 2 1 6 6 H 1.48507 * 109.47024 * 59.99923 * 3 2 1 7 7 C 1.38816 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99754 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.46924 * 125.37472 * 179.97438 * 9 7 2 11 11 C 1.54191 * 106.26227 * 162.13145 * 10 9 7 12 12 H 1.09000 * 109.28219 * 271.43881 * 11 10 9 13 13 C 1.50709 * 110.50446 * 151.08670 * 11 10 9 14 14 C 1.51325 * 113.55175 * 289.37349 * 13 11 10 15 15 C 1.51629 * 111.98031 * 304.61731 * 14 13 11 16 16 N 1.44509 * 112.65277 * 42.75915 * 15 14 13 17 17 C 1.34778 * 116.62858 * 154.62480 * 16 15 14 18 18 O 1.21283 * 119.99483 * 175.24526 * 17 16 15 19 19 C 1.50696 * 120.00305 * 355.25607 * 17 16 15 20 20 H 1.09005 * 109.47122 * 341.97943 * 19 17 16 21 21 C 1.52994 * 109.47377 * 101.98349 * 19 17 16 22 22 C 1.53006 * 117.50166 * 3.21035 * 21 19 17 23 23 C 1.53007 * 117.49899 * 294.55232 * 21 19 17 24 24 N 1.46900 * 109.46738 * 221.98520 * 19 17 16 25 25 C 1.48530 * 110.99868 * 289.57054 * 24 19 17 26 26 C 1.54939 * 103.22735 * 159.72374 * 25 24 19 27 27 C 1.54597 * 102.92173 * 322.58989 * 26 25 24 28 28 C 1.47897 * 111.00513 * 46.96995 * 24 19 17 29 29 C 1.44097 * 126.73726 * 334.60693 * 16 15 14 30 30 H 1.09004 * 108.45546 * 254.35395 * 29 16 15 31 31 C 1.46820 * 125.37840 * 359.97106 * 9 7 2 32 32 H 0.96997 * 120.00041 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.09552 * 42.93475 * 10 9 7 34 34 H 1.09001 * 110.09619 * 281.33058 * 10 9 7 35 35 H 1.09011 * 108.66729 * 50.42199 * 13 11 10 36 36 H 1.08995 * 108.67294 * 168.31634 * 13 11 10 37 37 H 1.09009 * 108.97900 * 65.26078 * 14 13 11 38 38 H 1.08995 * 108.98296 * 183.97073 * 14 13 11 39 39 H 1.09001 * 108.84497 * 281.94186 * 15 14 13 40 40 H 1.09002 * 108.84679 * 163.57602 * 15 14 13 41 41 H 1.08996 * 115.55199 * 148.88135 * 21 19 17 42 42 H 1.09004 * 117.49065 * 0.02562 * 22 21 19 43 43 H 1.08991 * 117.49819 * 145.01872 * 22 21 19 44 44 H 1.08997 * 117.49724 * 214.97949 * 23 21 19 45 45 H 1.08996 * 117.49509 * 359.97438 * 23 21 19 46 46 H 1.08999 * 110.66897 * 278.15939 * 25 24 19 47 47 H 1.08995 * 110.67021 * 41.29207 * 25 24 19 48 48 H 1.09004 * 110.72352 * 204.22886 * 26 25 24 49 49 H 1.09002 * 110.87420 * 81.01755 * 26 25 24 50 50 H 1.09002 * 110.30161 * 263.03963 * 27 26 25 51 51 H 1.08994 * 110.39408 * 140.91560 * 27 26 25 52 52 H 1.08996 * 109.91365 * 333.51054 * 28 24 19 53 53 H 1.08994 * 109.91666 * 94.60216 * 28 24 19 54 54 H 1.08997 * 109.84109 * 300.42969 * 31 9 7 55 55 H 1.09003 * 109.83945 * 61.43947 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9379 -3.7236 0.0005 11 6 0.8372 -4.7032 0.4547 12 1 0.8505 -4.7807 1.5419 13 6 1.0636 -6.0669 -0.1455 14 6 0.8052 -6.1223 -1.6355 15 6 -0.5884 -5.6399 -1.9881 16 7 -0.9687 -4.4537 -1.2555 17 6 -1.8953 -3.6606 -1.8291 18 8 -2.3225 -2.6963 -1.2304 19 6 -2.4006 -3.9721 -3.2143 20 1 -1.7049 -4.6484 -3.7113 21 6 -3.7759 -4.6354 -3.1183 22 6 -4.3931 -4.7840 -1.7261 23 6 -3.8510 -6.0139 -2.4586 24 7 -2.5099 -2.7276 -3.9869 25 6 -3.6264 -1.8861 -3.4854 26 6 -3.2705 -0.4735 -4.0132 27 6 -1.7313 -0.4305 -3.8751 28 6 -1.2891 -1.9052 -3.8430 29 6 -0.4601 -4.0312 0.0248 30 1 -1.2249 -4.2183 0.7787 31 6 -0.1360 -2.5257 0.0006 32 1 -0.4850 0.8400 -0.0004 33 1 2.7753 -3.7518 0.6978 34 1 2.2768 -3.9803 -1.0032 35 1 2.0961 -6.3631 0.0407 36 1 0.4046 -6.7800 0.3496 37 1 1.5369 -5.4957 -2.1458 38 1 0.9215 -7.1506 -1.9776 39 1 -1.3021 -6.4338 -1.7676 40 1 -0.6261 -5.4218 -3.0554 41 1 -4.4521 -4.4380 -3.9500 42 1 -3.8193 -4.4087 -0.8787 43 1 -5.4752 -4.6846 -1.6421 44 1 -4.5769 -6.7232 -2.8562 45 1 -2.9205 -6.4484 -2.0935 46 1 -4.5774 -2.2227 -3.8983 47 1 -3.6546 -1.8937 -2.3959 48 1 -3.7347 0.2967 -3.3973 49 1 -3.5675 -0.3624 -5.0561 50 1 -1.4485 0.0695 -2.9488 51 1 -1.2873 0.0790 -4.7302 52 1 -0.8024 -2.1264 -2.8932 53 1 -0.6050 -2.1088 -4.6668 54 1 -0.5530 -2.0434 0.8847 55 1 -0.5503 -2.0723 -0.8999 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050103082.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:06 Heat of formation + Delta-G solvation = 37.696835 kcal Electronic energy + Delta-G solvation = -35161.315161 eV Core-core repulsion = 31199.936133 eV Total energy + Delta-G solvation = -3961.379028 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.61612 -40.39491 -38.39716 -37.77842 -36.94817 -34.69999 -33.78058 -33.00678 -31.45026 -29.82162 -29.07926 -27.54494 -27.25260 -25.61179 -23.82288 -23.32490 -23.12115 -22.55198 -21.85717 -21.47136 -20.02042 -19.35193 -18.81801 -18.15642 -17.77080 -17.26944 -16.90359 -16.69549 -16.42835 -15.79150 -15.56936 -15.44484 -15.22006 -15.11032 -14.86210 -14.48408 -14.27650 -14.05869 -13.82445 -13.62150 -13.55951 -13.26835 -13.06681 -12.94817 -12.83149 -12.73873 -12.44536 -12.38901 -12.25023 -12.16784 -12.07325 -12.00020 -11.80522 -11.71902 -11.67397 -11.49992 -11.36086 -11.31167 -11.23299 -11.09201 -10.74610 -10.63242 -9.42228 -9.16724 -8.80151 -7.78547 -5.17761 1.38703 1.39877 1.50075 1.69717 2.11803 2.46604 2.78575 2.96350 3.34485 3.47677 3.58421 3.68309 3.74427 3.76345 3.82496 3.90440 3.96768 4.00098 4.00565 4.04951 4.08464 4.17570 4.35140 4.42518 4.46031 4.57212 4.60107 4.65449 4.68733 4.70886 4.71796 4.79996 4.85940 4.90206 4.93275 4.97062 5.03862 5.06677 5.08279 5.12996 5.15380 5.18736 5.22358 5.29700 5.33525 5.37302 5.44033 5.46834 5.55017 5.76764 5.83882 5.93388 6.07226 6.26151 6.51011 7.10292 7.36906 7.81710 8.44157 9.26066 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.005989 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.463776 B = 4674.290683 C = 6747.783325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.060 4.060 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.138 3.862 11 C -0.090 4.090 12 H 0.078 0.922 13 C -0.097 4.097 14 C -0.125 4.125 15 C 0.096 3.904 16 N -0.588 5.588 17 C 0.479 3.521 18 O -0.547 6.547 19 C 0.081 3.919 20 H 0.123 0.877 21 C -0.138 4.138 22 C -0.195 4.195 23 C -0.154 4.154 24 N -0.477 5.477 25 C 0.023 3.977 26 C -0.112 4.112 27 C -0.123 4.123 28 C 0.036 3.964 29 C 0.144 3.856 30 H 0.042 0.958 31 C 0.187 3.813 32 H 0.239 0.761 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.028 0.972 51 H 0.078 0.922 52 H 0.021 0.979 53 H 0.083 0.917 54 H -0.013 1.013 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 -17.640 -9.438 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.355 5.355 10 C 0.013 3.987 11 C -0.110 4.110 12 H 0.096 0.904 13 C -0.135 4.135 14 C -0.163 4.163 15 C -0.025 4.025 16 N -0.322 5.322 17 C 0.266 3.734 18 O -0.425 6.425 19 C -0.031 4.031 20 H 0.140 0.860 21 C -0.157 4.157 22 C -0.233 4.233 23 C -0.190 4.190 24 N -0.200 5.200 25 C -0.104 4.104 26 C -0.150 4.150 27 C -0.161 4.161 28 C -0.092 4.092 29 C 0.038 3.962 30 H 0.060 0.940 31 C 0.062 3.938 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.150 0.850 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.047 0.953 51 H 0.097 0.903 52 H 0.039 0.961 53 H 0.101 0.899 54 H 0.005 0.995 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.435 -17.130 -9.631 20.678 hybrid contribution 0.791 2.166 1.677 2.852 sum -5.644 -14.963 -7.954 17.861 Atomic orbital electron populations 1.70324 1.05875 1.24311 1.57309 1.25624 0.96476 1.00674 1.02677 0.85152 0.78373 0.80143 0.76559 1.18822 1.22102 1.22188 1.19367 0.90697 0.83771 1.43687 0.90318 1.44683 1.02510 1.01188 1.87108 1.21583 0.95018 0.84603 0.97542 1.21327 0.92609 0.96266 1.00766 0.90370 1.20496 1.03584 0.93462 0.95937 1.21182 0.95137 1.03604 0.96333 1.21456 0.98256 0.86420 0.96353 1.47001 1.40435 1.24872 1.19884 1.22071 0.79358 0.82369 0.89566 1.90746 1.57942 1.29057 1.64744 1.21993 0.98524 0.94342 0.88256 0.85952 1.22057 0.95362 1.00636 0.97638 1.23081 1.01206 1.04138 0.94828 1.23320 1.03949 0.90069 1.01701 1.65327 1.03392 1.03589 1.47726 1.23467 0.94802 0.92031 1.00072 1.22404 0.93897 0.96726 1.01980 1.22201 0.97591 0.95760 1.00596 1.22808 0.93200 0.93504 0.99661 1.20734 0.95263 0.95525 0.84637 0.94006 1.21287 0.82921 0.90116 0.99442 0.95160 0.94734 0.96057 0.89646 0.90083 0.92995 0.86330 0.89521 0.89498 0.84972 0.91776 0.87765 0.85662 0.87921 0.88527 0.92586 0.92017 0.88955 0.95309 0.90312 0.96093 0.89850 0.99504 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.98 10.27 21.65 0.22 -59.75 16 2 C -0.06 -3.64 5.48 84.86 0.47 -3.18 16 3 Si 0.97 48.52 29.55 68.60 2.03 50.55 16 4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 7 C -0.25 -14.56 10.25 84.04 0.86 -13.70 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.63 -34.19 3.39 -695.80 -2.36 -36.55 16 10 C 0.14 5.76 6.65 86.70 0.58 6.34 16 11 C -0.09 -3.04 3.04 -11.37 -0.03 -3.07 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.10 -2.13 5.17 29.30 0.15 -1.98 16 14 C -0.13 -2.42 5.83 29.60 0.17 -2.25 16 15 C 0.10 2.11 5.35 86.30 0.46 2.58 16 16 N -0.59 -19.55 3.09 -810.23 -2.50 -22.05 16 17 C 0.48 17.39 2.12 87.66 0.19 17.58 16 18 O -0.55 -25.68 9.86 -3.04 -0.03 -25.71 16 19 C 0.08 2.28 2.36 44.17 0.10 2.38 16 20 H 0.12 2.94 5.25 -2.38 -0.01 2.93 16 21 C -0.14 -3.07 4.67 -10.79 -0.05 -3.12 16 22 C -0.20 -4.78 9.60 30.62 0.29 -4.48 16 23 C -0.15 -2.62 10.12 30.62 0.31 -2.31 16 24 N -0.48 -14.89 5.40 -862.29 -4.66 -19.55 16 25 C 0.02 0.75 5.22 86.65 0.45 1.20 16 26 C -0.11 -3.54 7.06 31.80 0.22 -3.31 16 27 C -0.12 -4.68 6.93 31.47 0.22 -4.46 16 28 C 0.04 1.37 6.25 86.45 0.54 1.91 16 29 C 0.14 5.82 3.14 45.55 0.14 5.96 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 C 0.19 10.16 4.13 86.66 0.36 10.52 16 32 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.02 0.88 6.69 -2.39 -0.02 0.87 16 35 H 0.08 1.63 8.11 -2.38 -0.02 1.61 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.22 7.00 -2.38 -0.02 1.20 16 38 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.43 5.65 -2.39 -0.01 1.42 16 40 H 0.09 1.74 5.32 -2.39 -0.01 1.72 16 41 H 0.13 2.60 7.68 -2.39 -0.02 2.58 16 42 H 0.06 2.11 5.94 -2.38 -0.01 2.10 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.10 1.66 5.01 -2.39 -0.01 1.65 16 46 H 0.10 2.53 7.56 -2.39 -0.02 2.51 16 47 H 0.06 2.25 5.31 -2.39 -0.01 2.24 16 48 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 52 H 0.02 0.99 4.54 -2.39 -0.01 0.98 16 53 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 54 H -0.01 -0.86 7.36 -2.39 -0.02 -0.88 16 55 H 0.05 3.28 3.57 -2.39 -0.01 3.27 16 Total: -1.00 -78.81 385.09 -0.97 -79.78 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.89 Total: 26.68 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.43 Total: 6.60 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -9.29 Total: -137.90 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.03 Total: -25.71 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -78.81 -0.97 -79.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050103082.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.478 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds