Wall clock time and date at job start Wed Apr 1 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00254 * 2 1 4 4 H 1.48501 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46670 * 300.00227 * 3 2 1 6 6 H 1.48503 * 109.47017 * 59.99786 * 3 2 1 7 7 C 1.38819 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99729 * 197.04660 * 7 2 1 9 9 N 1.36935 * 119.99752 * 17.05201 * 7 2 1 10 10 C 1.47087 * 120.87840 * 206.63991 * 9 7 2 11 11 C 1.53232 * 108.51859 * 231.16179 * 10 9 7 12 12 N 1.46893 * 109.34236 * 306.17093 * 11 10 9 13 13 C 1.46905 * 110.99926 * 187.25511 * 12 11 10 14 14 H 1.08991 * 110.91655 * 303.90341 * 13 12 11 15 15 C 1.55157 * 111.00328 * 67.80366 * 13 12 11 16 16 C 1.54326 * 102.94044 * 153.57576 * 15 13 12 17 17 N 1.47018 * 107.27443 * 337.80498 * 16 15 13 18 18 C 1.34776 * 125.65074 * 178.90520 * 17 16 15 19 19 O 1.21281 * 119.99960 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00053 * 0.04263 * 18 17 16 21 21 C 1.53000 * 109.47156 * 179.97438 * 20 18 17 22 22 H 1.09004 * 109.63625 * 55.42115 * 21 20 18 23 23 C 1.53014 * 109.64511 * 295.00167 * 21 20 18 24 24 C 1.50070 * 110.15058 * 190.87889 * 23 21 20 25 25 C 1.29450 * 124.07195 * 17.13117 * 24 23 21 26 26 C 1.50066 * 124.07261 * 359.55209 * 25 24 23 27 27 C 1.53009 * 110.15828 * 17.09555 * 26 25 24 28 28 C 1.47425 * 108.70083 * 358.94128 * 17 16 15 29 29 C 1.46894 * 111.27409 * 63.10776 * 12 11 10 30 30 C 1.47080 * 120.88628 * 26.61741 * 9 7 2 31 31 H 0.97000 * 119.99893 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.62867 * 111.45078 * 10 9 7 33 33 H 1.08996 * 109.78380 * 350.97094 * 10 9 7 34 34 H 1.09003 * 109.49195 * 186.21088 * 11 10 9 35 35 H 1.09004 * 109.49448 * 66.13199 * 11 10 9 36 36 H 1.08999 * 110.72382 * 271.93593 * 15 13 12 37 37 H 1.09000 * 110.72171 * 35.21585 * 15 13 12 38 38 H 1.09008 * 109.88363 * 218.38783 * 16 15 13 39 39 H 1.08996 * 110.00991 * 97.29820 * 16 15 13 40 40 H 1.09003 * 109.47216 * 300.00319 * 20 18 17 41 41 H 1.09003 * 109.47141 * 59.99695 * 20 18 17 42 42 H 1.09006 * 109.36041 * 311.08580 * 23 21 20 43 43 H 1.09002 * 109.36175 * 70.81074 * 23 21 20 44 44 H 1.07991 * 117.96639 * 197.11006 * 24 23 21 45 45 H 1.07999 * 117.95902 * 179.53624 * 25 24 23 46 46 H 1.09007 * 109.35599 * 137.31948 * 26 25 24 47 47 H 1.09003 * 109.35844 * 256.90122 * 26 25 24 48 48 H 1.09000 * 109.64872 * 190.89525 * 27 26 25 49 49 H 1.08999 * 109.62309 * 70.27231 * 27 26 25 50 50 H 1.09004 * 110.37025 * 265.28963 * 28 17 16 51 51 H 1.09005 * 110.36733 * 142.96427 * 28 17 16 52 52 H 1.09000 * 109.49258 * 56.84703 * 29 12 11 53 53 H 1.08997 * 109.50067 * 176.93712 * 29 12 11 54 54 H 1.09000 * 109.62836 * 248.54905 * 30 9 7 55 55 H 1.09008 * 109.62558 * 8.92763 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0547 -1.2229 0.2736 9 7 1.3707 -2.3619 -0.3488 10 6 1.8300 -3.6611 0.1655 11 6 2.0026 -4.6194 -1.0177 12 7 0.7561 -4.6640 -1.7935 13 6 0.8207 -5.6984 -2.8346 14 1 1.6808 -5.5421 -3.4856 15 6 0.8485 -7.1174 -2.2077 16 6 0.2402 -7.9983 -3.3193 17 7 -0.5574 -7.1186 -4.1861 18 6 -1.2340 -7.5033 -5.2864 19 8 -1.8611 -6.6878 -5.9287 20 6 -1.2116 -8.9469 -5.7183 21 6 -2.0531 -9.1133 -6.9852 22 1 -1.6938 -8.4312 -7.7558 23 6 -3.5197 -8.8092 -6.6723 24 6 -4.3900 -9.2202 -7.8237 25 6 -4.0148 -10.0261 -8.7648 26 6 -2.6541 -10.6542 -8.8410 27 6 -1.9533 -10.5604 -7.4841 28 6 -0.4938 -5.7456 -3.6528 29 6 0.4425 -3.3517 -2.3742 30 6 0.2059 -2.3413 -1.2466 31 1 -0.4850 0.8401 0.0004 32 1 1.0901 -4.0632 0.8575 33 1 2.7833 -3.5382 0.6794 34 1 2.2359 -5.6173 -0.6464 35 1 2.8149 -4.2687 -1.6543 36 1 1.8719 -7.4230 -1.9902 37 1 0.2345 -7.1535 -1.3078 38 1 -0.3993 -8.7629 -2.8781 39 1 1.0344 -8.4688 -3.8989 40 1 -0.1843 -9.2495 -5.9216 41 1 -1.6235 -9.5701 -4.9245 42 1 -3.8197 -9.3572 -5.7791 43 1 -3.6376 -7.7399 -6.4967 44 1 -5.3915 -8.8191 -7.8700 45 1 -4.7255 -10.2610 -9.5434 46 1 -2.7552 -11.7021 -9.1239 47 1 -2.0581 -10.1353 -9.5918 48 1 -0.9052 -10.8391 -7.5928 49 1 -2.4411 -11.2274 -6.7733 50 1 -1.3498 -5.5494 -3.0071 51 1 -0.4592 -5.0231 -4.4683 52 1 1.2765 -3.0185 -2.9919 53 1 -0.4557 -3.4300 -2.9867 54 1 -0.6901 -2.6166 -0.6903 55 1 0.0841 -1.3423 -1.6656 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052066898.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:45 Heat of formation + Delta-G solvation = -13.761920 kcal Electronic energy + Delta-G solvation = -31105.168496 eV Core-core repulsion = 27141.558049 eV Total energy + Delta-G solvation = -3963.610447 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.38403 -40.13841 -39.10362 -37.98261 -35.81764 -33.83682 -33.29539 -32.08070 -31.59517 -31.31000 -29.93487 -28.49695 -27.25875 -25.08575 -24.51052 -24.11215 -23.46427 -22.12976 -21.54066 -20.81859 -20.01258 -18.91064 -18.79656 -18.06667 -17.58195 -16.90963 -16.76718 -16.51182 -16.05784 -15.74854 -15.47509 -15.35226 -15.29050 -15.09467 -14.87678 -14.55878 -14.44492 -14.25164 -13.91671 -13.73502 -13.57461 -13.40401 -13.19102 -13.15839 -13.10013 -12.90386 -12.72224 -12.56059 -12.50059 -12.43781 -12.20429 -12.02745 -11.87524 -11.76588 -11.62823 -11.49806 -11.42832 -11.36326 -11.00815 -10.70348 -10.60585 -9.84414 -9.64795 -9.32949 -8.69810 -7.89033 -5.33480 1.42671 1.44327 1.46198 1.56685 1.65091 1.92229 2.49357 2.96045 3.26701 3.34953 3.66480 3.69687 3.72559 3.76522 3.85585 4.06913 4.10651 4.20949 4.26770 4.32587 4.35946 4.40192 4.41682 4.49484 4.54066 4.57514 4.59471 4.65129 4.68987 4.73549 4.77207 4.80482 4.84520 4.87105 4.92268 4.93293 4.99794 5.06558 5.10984 5.12184 5.17084 5.23356 5.26773 5.31431 5.37059 5.39176 5.52426 5.60470 5.65959 5.80067 6.09994 6.11505 6.24729 6.36057 6.56037 7.11660 7.18189 7.83026 8.36916 9.17963 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.001886 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.440301 B =14842.475342 C =15643.211071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.143 3.857 11 C 0.058 3.942 12 N -0.527 5.527 13 C 0.071 3.929 14 H 0.051 0.949 15 C -0.114 4.114 16 C 0.102 3.898 17 N -0.620 5.620 18 C 0.517 3.483 19 O -0.586 6.586 20 C -0.120 4.120 21 C -0.070 4.070 22 H 0.055 0.945 23 C -0.092 4.092 24 C -0.168 4.168 25 C -0.162 4.162 26 C -0.093 4.093 27 C -0.109 4.109 28 C 0.117 3.883 29 C 0.051 3.949 30 C 0.187 3.813 31 H 0.249 0.751 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.023 0.977 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.017 0.983 53 H 0.071 0.929 54 H -0.002 1.002 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -28.401 -13.243 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.070 4.070 12 N -0.252 5.252 13 C -0.038 4.038 14 H 0.069 0.931 15 C -0.152 4.152 16 C -0.020 4.020 17 N -0.354 5.354 18 C 0.309 3.691 19 O -0.466 6.466 20 C -0.159 4.159 21 C -0.089 4.089 22 H 0.074 0.926 23 C -0.129 4.129 24 C -0.187 4.187 25 C -0.180 4.180 26 C -0.130 4.130 27 C -0.146 4.146 28 C -0.007 4.007 29 C -0.078 4.078 30 C 0.061 3.939 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.041 0.959 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.069 0.931 52 H 0.036 0.964 53 H 0.089 0.911 54 H 0.016 0.984 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.938 -28.007 -13.304 31.021 hybrid contribution 0.294 2.245 -0.397 2.299 sum -0.644 -25.762 -13.701 29.186 Atomic orbital electron populations 1.70198 1.06715 1.25748 1.55666 1.25819 0.96070 1.01591 1.01487 0.85201 0.78663 0.79834 0.76717 1.18910 1.21906 1.21855 1.19579 0.92947 0.85968 1.40579 0.91227 1.44408 1.34191 1.02385 1.52855 1.21161 0.97622 0.85317 0.94172 1.22475 0.88959 1.00434 0.95176 1.61953 1.34839 1.04610 1.23783 1.22759 0.95383 0.93516 0.92167 0.93066 1.22706 1.03363 0.90974 0.98166 1.22317 0.95375 0.93051 0.91217 1.48637 1.50272 1.09762 1.26753 1.21230 0.77241 0.92362 0.78315 1.90682 1.44444 1.56308 1.55210 1.21786 1.04159 0.90383 0.99601 1.20931 0.94089 0.97878 0.95996 0.92612 1.20574 0.94267 1.01110 0.96917 1.22157 0.99860 0.99313 0.97330 1.22267 0.98657 0.98481 0.98615 1.20510 0.93217 1.01292 0.98006 1.21652 1.01784 0.94449 0.96717 1.22002 0.97948 0.84390 0.96318 1.22548 0.98912 0.89729 0.96623 1.20575 0.88009 0.96153 0.89187 0.94148 0.96383 0.91877 0.87682 0.95917 0.87641 0.89701 0.88734 0.88548 0.86050 0.86444 0.90737 0.92448 0.88556 0.87385 0.89362 0.90943 0.89548 0.90725 0.92052 0.93081 0.96449 0.91110 0.98381 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.81 11.15 21.65 0.24 -56.57 16 2 C -0.05 -3.11 4.93 84.86 0.42 -2.69 16 3 Si 0.97 45.59 29.59 68.60 2.03 47.62 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 7 C -0.26 -14.52 9.63 84.04 0.81 -13.71 16 8 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -31.47 3.04 -698.11 -2.12 -33.59 16 10 C 0.14 5.82 6.69 86.34 0.58 6.39 16 11 C 0.06 1.85 5.52 86.38 0.48 2.33 16 12 N -0.53 -17.19 4.53 -861.94 -3.90 -21.09 16 13 C 0.07 1.76 2.72 46.31 0.13 1.88 16 14 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 15 C -0.11 -1.82 5.62 31.78 0.18 -1.64 16 16 C 0.10 1.27 6.49 86.73 0.56 1.83 16 17 N -0.62 -13.24 3.33 -811.78 -2.70 -15.94 16 18 C 0.52 11.98 7.60 87.66 0.67 12.64 16 19 O -0.59 -19.32 14.29 -3.03 -0.04 -19.36 16 20 C -0.12 -1.57 4.37 29.85 0.13 -1.44 16 21 C -0.07 -1.12 1.88 -10.66 -0.02 -1.14 16 22 H 0.06 1.17 7.96 -2.39 -0.02 1.15 16 23 C -0.09 -1.81 5.03 29.66 0.15 -1.66 16 24 C -0.17 -3.10 9.80 27.03 0.27 -2.84 16 25 C -0.16 -2.45 9.80 27.03 0.27 -2.19 16 26 C -0.09 -1.05 6.12 29.65 0.18 -0.87 16 27 C -0.11 -1.10 5.31 30.73 0.16 -0.94 16 28 C 0.12 3.21 5.03 86.86 0.44 3.65 16 29 C 0.05 2.04 5.43 86.38 0.47 2.51 16 30 C 0.19 9.43 5.42 86.35 0.47 9.89 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 34 H 0.11 2.49 7.11 -2.39 -0.02 2.47 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 1.20 7.97 -2.39 -0.02 1.18 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.12 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.12 1.00 8.11 -2.39 -0.02 0.99 16 42 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 43 H 0.06 1.54 6.23 -2.39 -0.01 1.52 16 44 H 0.10 1.75 8.06 -2.92 -0.02 1.72 16 45 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 50 H 0.06 1.90 8.12 -2.38 -0.02 1.88 16 51 H 0.05 1.63 7.77 -2.38 -0.02 1.61 16 52 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 53 H 0.07 2.67 6.60 -2.39 -0.02 2.65 16 54 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 55 H 0.05 3.07 6.11 -2.38 -0.01 3.06 16 Total: -1.00 -73.98 414.78 0.66 -73.32 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.83 Total: 13.58 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.32 Total: 12.03 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -8.48 Total: -127.19 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.98 0.66 -73.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052066898.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.559 kcal (2) G-P(sol) polarization free energy of solvation -73.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds