Wall clock time and date at job start Wed Apr 1 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99471 * 2 1 4 4 H 1.48504 * 109.46964 * 239.99418 * 3 2 1 5 5 H 1.48499 * 109.47608 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46723 * 120.00183 * 3 2 1 7 7 C 1.38805 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00332 * 193.09861 * 7 2 1 9 9 N 1.36935 * 120.00232 * 13.10835 * 7 2 1 10 10 C 1.47080 * 120.88454 * 209.20874 * 9 7 2 11 11 C 1.53243 * 108.52121 * 231.20281 * 10 9 7 12 12 N 1.46904 * 109.33545 * 306.16764 * 11 10 9 13 13 C 1.46897 * 110.99291 * 187.25194 * 12 11 10 14 14 H 1.09000 * 110.89117 * 298.30080 * 13 12 11 15 15 C 1.55164 * 111.00153 * 174.41932 * 13 12 11 16 16 C 1.54321 * 102.94069 * 206.42487 * 15 13 12 17 17 N 1.47017 * 107.27471 * 22.19574 * 16 15 13 18 18 C 1.34781 * 125.65046 * 181.02163 * 17 16 15 19 19 O 1.21279 * 119.99976 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.99949 * 0.02562 * 18 17 16 21 21 C 1.52300 * 115.91425 * 111.39080 * 20 18 17 22 22 C 1.52302 * 115.29674 * 179.41361 * 20 18 17 23 23 H 1.08997 * 117.24014 * 0.35574 * 22 20 18 24 24 C 1.52686 * 120.38443 * 148.94423 * 22 20 18 25 25 C 1.52877 * 110.25685 * 338.59869 * 24 22 20 26 26 C 1.53299 * 108.58317 * 54.51895 * 25 24 22 27 27 C 1.52069 * 114.63600 * 325.14377 * 20 18 17 28 28 C 1.47421 * 108.70271 * 1.28135 * 17 16 15 29 29 C 1.46900 * 111.26894 * 63.10944 * 12 11 10 30 30 C 1.47090 * 120.87987 * 29.22187 * 9 7 2 31 31 H 0.97002 * 120.00151 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.62810 * 111.48969 * 10 9 7 33 33 H 1.09000 * 109.78466 * 351.00231 * 10 9 7 34 34 H 1.08997 * 109.49260 * 186.20932 * 11 10 9 35 35 H 1.09003 * 109.51258 * 66.14040 * 11 10 9 36 36 H 1.08998 * 110.71929 * 88.06680 * 15 13 12 37 37 H 1.08995 * 110.87039 * 324.85854 * 15 13 12 38 38 H 1.08997 * 109.88690 * 262.77156 * 16 15 13 39 39 H 1.09006 * 109.88239 * 141.61176 * 16 15 13 40 40 H 1.09004 * 117.54260 * 213.16283 * 21 20 18 41 41 H 1.09005 * 117.54019 * 358.33845 * 21 20 18 42 42 H 1.08998 * 109.30797 * 218.36181 * 24 22 20 43 43 H 1.08998 * 109.19547 * 98.76595 * 24 22 20 44 44 H 1.09004 * 109.62246 * 294.79265 * 25 24 22 45 45 H 1.09002 * 109.77437 * 174.33644 * 25 24 22 46 46 H 1.08997 * 109.61937 * 165.82858 * 26 25 24 47 47 H 1.09004 * 109.76801 * 45.37670 * 26 25 24 48 48 H 1.08999 * 109.26951 * 314.64023 * 27 20 18 49 49 H 1.09004 * 109.26988 * 74.10482 * 27 20 18 50 50 H 1.09002 * 110.36498 * 94.48648 * 28 17 16 51 51 H 1.08996 * 110.37236 * 216.80454 * 28 17 16 52 52 H 1.08998 * 109.49599 * 56.84859 * 29 12 11 53 53 H 1.08998 * 109.48709 * 176.93139 * 29 12 11 54 54 H 1.08997 * 109.62920 * 248.50555 * 30 9 7 55 55 H 1.08999 * 109.62597 * 9.09486 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0692 -1.2142 0.2125 9 7 1.3525 -2.3727 -0.2679 10 6 1.8106 -3.6456 0.3093 11 6 1.9495 -4.6707 -0.8213 12 7 0.6864 -4.7459 -1.5676 13 6 0.7196 -5.8377 -2.5498 14 1 1.5070 -5.6747 -3.2857 15 6 -0.6598 -6.0074 -3.2396 16 6 -0.6592 -7.4943 -3.6525 17 7 0.3096 -8.1865 -2.7901 18 6 0.6175 -9.4973 -2.8489 19 8 1.4354 -9.9630 -2.0840 20 6 -0.0546 -10.3843 -3.8650 21 6 0.8371 -10.9119 -4.9813 22 6 0.3831 -11.8430 -3.8464 23 1 1.1318 -12.1298 -3.1080 24 6 -0.5955 -12.9480 -4.2369 25 6 -2.0355 -12.4550 -4.0928 26 6 -2.1946 -11.1665 -4.9079 27 6 -1.5033 -10.0273 -4.1586 28 6 0.8841 -7.2105 -1.8463 29 6 0.3728 -3.4650 -2.2148 30 6 0.1692 -2.3905 -1.1413 31 1 -0.4850 0.8400 0.0004 32 1 1.0819 -4.0005 1.0379 33 1 2.7757 -3.5040 0.7957 34 1 2.1814 -5.6485 -0.3992 35 1 2.7515 -4.3651 -1.4934 36 1 -0.7344 -5.3638 -4.1162 37 1 -1.4711 -5.8013 -2.5414 38 1 -0.3603 -7.5891 -4.6964 39 1 -1.6528 -7.9193 -3.5092 40 1 0.3846 -11.0557 -5.9625 41 1 1.8798 -10.5944 -4.9861 42 1 -0.4425 -13.8107 -3.5884 43 1 -0.4147 -13.2376 -5.2720 44 1 -2.2499 -12.2530 -3.0433 45 1 -2.7238 -13.2125 -4.4676 46 1 -3.2534 -10.9370 -5.0267 47 1 -1.7350 -11.2915 -5.8884 48 1 -2.0262 -9.8449 -3.2198 49 1 -1.5348 -9.1244 -4.7685 50 1 0.3351 -7.2250 -0.9047 51 1 1.9390 -7.4243 -1.6745 52 1 1.1966 -3.1757 -2.8673 53 1 -0.5388 -3.5685 -2.8033 54 1 -0.7173 -2.6249 -0.5521 55 1 0.0499 -1.4166 -1.6161 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052079432.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:27 Heat of formation + Delta-G solvation = 6.425614 kcal Electronic energy + Delta-G solvation = -31835.403591 eV Core-core repulsion = 27872.668541 eV Total energy + Delta-G solvation = -3962.735050 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.99176 -40.39148 -39.15262 -38.10601 -35.88141 -33.98073 -33.49259 -32.20771 -31.82783 -31.36284 -29.65437 -27.86802 -25.82329 -25.65499 -24.51355 -24.34559 -23.09916 -22.26204 -21.62188 -20.84439 -20.65587 -19.44036 -18.81510 -18.15285 -17.60636 -16.98820 -16.84128 -16.10046 -15.87260 -15.56494 -15.55181 -15.28603 -15.18750 -14.95627 -14.93040 -14.76622 -14.55226 -14.23730 -14.17123 -13.99546 -13.75063 -13.41523 -13.30435 -12.95959 -12.93298 -12.87628 -12.65685 -12.53685 -12.49890 -12.19914 -12.03070 -11.95744 -11.87854 -11.84174 -11.58996 -11.49476 -11.44594 -11.36217 -10.96292 -10.70248 -10.60505 -10.57455 -9.73978 -9.34382 -8.65298 -7.87821 -5.36245 1.39284 1.46530 1.48124 1.55282 1.79470 2.49839 2.73568 2.92746 3.23590 3.28129 3.54267 3.64113 3.67686 3.68660 3.72563 3.86299 4.04266 4.12190 4.17353 4.25986 4.28587 4.30616 4.34983 4.37511 4.52448 4.53066 4.57453 4.60372 4.61164 4.67453 4.72402 4.74702 4.77482 4.85868 4.86869 4.95425 4.99603 5.00995 5.02810 5.11871 5.16250 5.18851 5.23727 5.25535 5.28472 5.33543 5.36574 5.41394 5.53200 5.60383 5.70600 6.11517 6.21706 6.38467 6.44208 7.03072 7.13973 7.82679 8.37902 9.18522 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.002023 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.279565 B =13840.011642 C =14288.863650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.266 4.266 8 H 0.063 0.937 9 N -0.615 5.615 10 C 0.146 3.854 11 C 0.054 3.946 12 N -0.527 5.527 13 C 0.073 3.927 14 H 0.051 0.949 15 C -0.120 4.120 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.550 3.450 19 O -0.591 6.591 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.124 4.124 23 H 0.087 0.913 24 C -0.085 4.085 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.088 4.088 28 C 0.120 3.880 29 C 0.054 3.946 30 C 0.186 3.814 31 H 0.251 0.749 32 H 0.016 0.984 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.018 0.982 53 H 0.092 0.908 54 H 0.000 1.000 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -24.327 -16.152 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.397 4.397 8 H 0.081 0.919 9 N -0.339 5.339 10 C 0.020 3.980 11 C -0.075 4.075 12 N -0.252 5.252 13 C -0.037 4.037 14 H 0.069 0.931 15 C -0.158 4.158 16 C -0.024 4.024 17 N -0.343 5.343 18 C 0.341 3.659 19 O -0.472 6.472 20 C -0.145 4.145 21 C -0.176 4.176 22 C -0.143 4.143 23 H 0.105 0.895 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.125 4.125 28 C -0.003 4.003 29 C -0.074 4.074 30 C 0.060 3.940 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.041 0.959 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.037 0.963 53 H 0.110 0.890 54 H 0.019 0.981 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.198 -24.589 -15.406 29.671 hybrid contribution 1.452 1.520 0.400 2.140 sum -4.746 -23.069 -15.006 27.926 Atomic orbital electron populations 1.70146 1.06512 1.25974 1.55349 1.25868 0.96223 1.01454 1.00901 0.85307 0.77516 0.79109 0.78251 1.20385 1.21746 1.20315 1.19448 0.91651 0.85450 1.43114 0.91903 1.44371 1.32660 1.03072 1.53782 1.21076 0.97421 0.85868 0.93628 1.22455 0.89665 0.99303 0.96079 1.61932 1.32995 1.04182 1.26069 1.22766 0.98616 0.89620 0.92659 0.93074 1.22770 0.96024 0.95509 1.01508 1.22684 0.93513 0.91309 0.94847 1.48401 1.42699 1.07228 1.36000 1.20090 0.81058 0.80881 0.83869 1.90666 1.37094 1.74556 1.44882 1.21071 0.97879 0.95475 1.00104 1.23279 0.98524 1.01522 0.94297 1.22347 1.01452 0.89621 1.00846 0.89506 1.21102 0.93372 0.95362 1.02380 1.21601 0.96039 0.98161 1.00182 1.21632 1.01231 0.93559 0.98941 1.21282 0.89386 1.00603 1.01275 1.22084 0.98349 0.86983 0.92889 1.22594 0.99840 0.88890 0.96122 1.20643 0.87526 0.95899 0.89886 0.93953 0.96645 0.92449 0.89880 0.95890 0.88125 0.89645 0.88917 0.88196 0.84831 0.89862 0.91415 0.89611 0.93135 0.90119 0.89926 0.90350 0.91911 0.88388 0.91389 0.92338 0.96332 0.88958 0.98148 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 11.11 21.65 0.24 -54.95 16 2 C -0.05 -2.75 5.01 84.86 0.43 -2.32 16 3 Si 0.97 45.01 29.57 68.60 2.03 47.04 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.27 -14.91 9.63 84.03 0.81 -14.10 16 8 H 0.06 3.44 7.86 -2.91 -0.02 3.42 16 9 N -0.61 -31.72 3.03 -698.12 -2.12 -33.83 16 10 C 0.15 6.35 6.69 86.35 0.58 6.92 16 11 C 0.05 1.94 5.48 86.38 0.47 2.41 16 12 N -0.53 -17.48 4.53 -861.43 -3.90 -21.37 16 13 C 0.07 1.87 2.73 46.39 0.13 2.00 16 14 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.12 -2.25 5.30 31.78 0.17 -2.08 16 16 C 0.10 1.51 5.01 86.73 0.43 1.94 16 17 N -0.61 -14.19 3.32 -811.37 -2.70 -16.89 16 18 C 0.55 14.39 7.32 87.66 0.64 15.03 16 19 O -0.59 -20.80 16.26 -3.03 -0.05 -20.85 16 20 C -0.14 -2.50 2.32 -53.70 -0.12 -2.62 16 21 C -0.14 -2.01 9.28 30.58 0.28 -1.73 16 22 C -0.12 -2.14 5.65 -10.91 -0.06 -2.20 16 23 H 0.09 2.01 7.44 -2.39 -0.02 1.99 16 24 C -0.08 -0.96 5.83 30.45 0.18 -0.78 16 25 C -0.12 -1.20 5.93 30.65 0.18 -1.02 16 26 C -0.12 -0.92 5.70 30.65 0.17 -0.75 16 27 C -0.09 -1.03 3.65 30.25 0.11 -0.91 16 28 C 0.12 3.25 5.37 86.93 0.47 3.72 16 29 C 0.05 1.99 5.48 86.38 0.47 2.46 16 30 C 0.19 9.01 5.38 86.35 0.46 9.48 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 34 H 0.08 2.62 6.81 -2.39 -0.02 2.61 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.54 7.94 -2.39 -0.02 1.52 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.06 7.55 -2.39 -0.02 1.04 16 39 H 0.10 1.19 5.64 -2.38 -0.01 1.17 16 40 H 0.13 1.16 7.27 -2.38 -0.02 1.14 16 41 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 43 H 0.09 0.69 8.05 -2.39 -0.02 0.67 16 44 H 0.05 0.66 8.04 -2.39 -0.02 0.64 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.08 0.46 7.12 -2.38 -0.02 0.45 16 48 H 0.06 0.86 7.61 -2.39 -0.02 0.84 16 49 H 0.10 0.80 5.35 -2.38 -0.01 0.79 16 50 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.06 1.75 7.73 -2.39 -0.02 1.73 16 52 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 53 H 0.09 2.82 6.84 -2.39 -0.02 2.80 16 54 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 55 H 0.06 3.16 6.20 -2.39 -0.01 3.14 16 Total: -1.00 -71.58 404.17 0.17 -71.41 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.86 Total: 14.00 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.80 Total: 15.44 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -8.47 Total: -127.04 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.58 0.17 -71.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052079432.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.834 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds