Wall clock time and date at job start Wed Apr 1 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48493 * 109.46981 * 240.00282 * 3 2 1 5 5 H 1.48501 * 109.47131 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47337 * 120.00077 * 3 2 1 7 7 C 1.38805 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00092 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.47483 * 125.66072 * 359.96325 * 9 7 2 11 11 C 1.55024 * 104.90653 * 204.03987 * 10 9 7 12 12 C 1.54471 * 101.53370 * 323.66097 * 11 10 9 13 13 C 1.47179 * 125.66223 * 179.97438 * 9 7 2 14 14 C 1.52248 * 110.29940 * 153.33301 * 12 11 10 15 15 C 1.53164 * 109.64700 * 182.01894 * 14 12 11 16 16 C 1.53191 * 109.26862 * 299.81435 * 15 14 12 17 17 N 1.47191 * 109.00397 * 55.24156 * 16 15 14 18 18 C 1.34780 * 120.87356 * 125.81165 * 17 16 15 19 19 O 1.21274 * 120.00049 * 175.11058 * 18 17 16 20 20 C 1.50701 * 119.99947 * 355.11443 * 18 17 16 21 21 C 1.54992 * 113.20135 * 305.67952 * 20 18 17 22 22 C 1.54055 * 104.76478 * 146.47166 * 21 20 18 23 23 N 1.48238 * 106.69802 * 1.01460 * 22 21 20 24 24 C 1.48804 * 105.17388 * 332.51126 * 23 22 21 25 25 C 1.47673 * 108.91377 * 88.16641 * 23 22 21 26 26 C 1.52995 * 109.28661 * 312.91439 * 25 23 22 27 27 C 1.54015 * 113.03122 * 182.68136 * 20 18 17 28 28 C 1.47077 * 118.42552 * 305.92228 * 17 16 15 29 29 H 0.96994 * 120.00102 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.35716 * 322.89881 * 10 9 7 31 31 H 1.09004 * 110.34847 * 85.07660 * 10 9 7 32 32 H 1.08998 * 111.01688 * 205.60014 * 11 10 9 33 33 H 1.09004 * 111.01464 * 81.72273 * 11 10 9 34 34 H 1.09002 * 109.91237 * 59.07149 * 13 9 7 35 35 H 1.09000 * 109.91409 * 297.79934 * 13 9 7 36 36 H 1.09003 * 109.43971 * 302.07406 * 14 12 11 37 37 H 1.08996 * 109.43974 * 61.99843 * 14 12 11 38 38 H 1.08997 * 109.50599 * 59.75961 * 15 14 12 39 39 H 1.08999 * 109.50167 * 179.87976 * 15 14 12 40 40 H 1.09002 * 109.55943 * 175.05716 * 16 15 14 41 41 H 1.08998 * 109.56420 * 295.38479 * 16 15 14 42 42 H 1.09005 * 110.37617 * 265.29084 * 21 20 18 43 43 H 1.08995 * 110.38077 * 27.64527 * 21 20 18 44 44 H 1.09006 * 110.01083 * 241.70606 * 22 21 20 45 45 H 1.08998 * 110.01601 * 120.32669 * 22 21 20 46 46 H 1.08994 * 110.93688 * 284.56285 * 24 23 22 47 47 H 1.09006 * 110.92896 * 160.89454 * 24 23 22 48 48 H 1.09004 * 109.50181 * 72.85330 * 25 23 22 49 49 H 1.08990 * 109.50439 * 192.92951 * 25 23 22 50 50 H 1.09001 * 109.36693 * 64.97386 * 26 25 23 51 51 H 1.08997 * 109.36798 * 184.72143 * 26 25 23 52 52 H 1.08996 * 109.62939 * 291.83761 * 27 20 18 53 53 H 1.09003 * 109.62650 * 52.42799 * 27 20 18 54 54 H 1.09005 * 109.57485 * 292.51989 * 28 17 16 55 55 H 1.09001 * 109.58317 * 172.26021 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1420 -2.5336 0.0008 11 6 -0.4037 -3.9344 0.6109 12 6 0.7807 -4.7458 0.0410 13 6 1.9323 -3.7290 0.0005 14 6 1.1195 -5.9066 0.9659 15 6 2.3266 -6.6704 0.4130 16 6 1.9871 -7.2132 -0.9787 17 7 1.5507 -6.0982 -1.8347 18 6 2.1434 -5.8652 -3.0226 19 8 1.7144 -4.9989 -3.7548 20 6 3.3393 -6.6814 -3.4409 21 6 4.4844 -6.6663 -2.3965 22 6 5.1290 -8.0616 -2.5005 23 7 4.3950 -8.7919 -3.5613 24 6 3.0308 -8.1978 -3.5707 25 6 5.0282 -8.5068 -4.8646 26 6 5.2634 -7.0005 -4.9934 27 6 3.9280 -6.2382 -4.7933 28 6 0.4528 -5.2410 -1.3624 29 1 -0.4850 0.8400 0.0004 30 1 -0.5996 -1.7600 0.6174 31 1 -0.5280 -2.4836 -1.0174 32 1 -1.3558 -4.3388 0.2673 33 1 -0.3658 -3.8998 1.6998 34 1 2.5652 -3.8502 0.8797 35 1 2.5207 -3.8703 -0.9060 36 1 1.3566 -5.5226 1.9582 37 1 0.2644 -6.5793 1.0320 38 1 3.1816 -5.9981 0.3429 39 1 2.5683 -7.4995 1.0780 40 1 2.8702 -7.6817 -1.4131 41 1 1.1850 -7.9469 -0.8986 42 1 5.2120 -5.8927 -2.6421 43 1 4.0832 -6.5071 -1.3956 44 1 5.0339 -8.5882 -1.5508 45 1 6.1806 -7.9675 -2.7716 46 1 2.4465 -8.5505 -2.7208 47 1 2.5192 -8.4121 -4.5090 48 1 5.9820 -9.0307 -4.9282 49 1 4.3738 -8.8435 -5.6685 50 1 5.9865 -6.6821 -4.2424 51 1 5.6530 -6.7791 -5.9870 52 1 3.2256 -6.4731 -5.5930 53 1 4.1210 -5.1656 -4.7748 54 1 -0.4742 -5.8140 -1.3403 55 1 0.3398 -4.3893 -2.0332 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054233048.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:32 Heat of formation + Delta-G solvation = -4.921453 kcal Electronic energy + Delta-G solvation = -34067.690490 eV Core-core repulsion = 30104.463394 eV Total energy + Delta-G solvation = -3963.227096 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.75199 -41.00171 -39.41894 -37.41808 -34.99525 -33.35830 -33.19714 -33.05618 -31.74457 -30.39211 -29.92643 -27.61866 -26.97793 -25.72084 -25.17758 -24.18301 -23.11847 -22.44323 -21.93117 -21.03789 -20.04355 -19.28225 -18.94350 -17.92139 -17.65283 -17.09598 -16.84601 -16.48726 -16.35832 -15.82333 -15.56588 -15.17724 -15.09852 -14.82083 -14.53641 -14.29457 -14.08595 -14.04652 -13.95533 -13.86209 -13.74687 -13.47375 -13.29090 -13.26796 -12.94333 -12.78681 -12.68530 -12.51519 -12.37410 -12.16048 -12.07926 -12.07006 -11.94374 -11.85792 -11.71833 -11.67849 -11.57052 -11.39689 -11.31299 -11.04898 -10.78762 -10.61005 -9.68906 -9.49863 -8.92389 -7.81741 -5.26105 1.38772 1.43276 1.49439 1.49509 1.94395 2.44731 2.96316 3.26173 3.31050 3.43648 3.60121 3.67583 3.74513 3.76092 3.88763 3.93563 4.01955 4.07418 4.10273 4.12264 4.16050 4.28454 4.30172 4.41456 4.48072 4.50062 4.55546 4.62892 4.66014 4.70553 4.75933 4.79001 4.80593 4.87308 4.88195 4.91343 4.95357 4.97619 5.03792 5.08217 5.11038 5.14571 5.16276 5.21542 5.25891 5.37104 5.46290 5.49552 5.50852 5.61866 5.72989 5.79081 5.92000 6.27041 6.41271 7.06646 7.13835 7.74762 8.39120 9.19795 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.003539 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.682413 B = 7910.863415 C = 8895.479008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.626 5.626 10 C 0.155 3.845 11 C -0.118 4.118 12 C -0.070 4.070 13 C 0.158 3.842 14 C -0.095 4.095 15 C -0.133 4.133 16 C 0.085 3.915 17 N -0.600 5.600 18 C 0.525 3.475 19 O -0.595 6.595 20 C -0.115 4.115 21 C -0.146 4.146 22 C 0.035 3.965 23 N -0.487 5.487 24 C 0.042 3.958 25 C 0.033 3.967 26 C -0.147 4.147 27 C -0.095 4.095 28 C 0.136 3.864 29 H 0.247 0.753 30 H 0.072 0.928 31 H -0.028 1.028 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.025 0.975 35 H -0.007 1.007 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.061 0.939 53 H 0.038 0.962 54 H 0.088 0.912 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.714 -25.792 -2.293 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.352 5.352 10 C 0.030 3.970 11 C -0.157 4.157 12 C -0.072 4.072 13 C 0.033 3.967 14 C -0.133 4.133 15 C -0.171 4.171 16 C -0.036 4.036 17 N -0.331 5.331 18 C 0.314 3.686 19 O -0.475 6.475 20 C -0.120 4.120 21 C -0.185 4.185 22 C -0.093 4.093 23 N -0.207 5.207 24 C -0.087 4.087 25 C -0.096 4.096 26 C -0.185 4.185 27 C -0.134 4.134 28 C 0.013 3.987 29 H 0.057 0.943 30 H 0.090 0.910 31 H -0.010 1.010 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.011 0.989 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.108 0.892 46 H 0.127 0.873 47 H 0.102 0.898 48 H 0.117 0.883 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.080 0.920 53 H 0.057 0.943 54 H 0.107 0.893 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.485 -25.802 -2.580 27.284 hybrid contribution 0.067 3.200 -0.726 3.282 sum 8.552 -22.603 -3.306 24.392 Atomic orbital electron populations 1.70059 1.06164 1.25083 1.58403 1.25630 0.96685 1.00943 1.02558 0.85144 0.77241 0.78786 0.78127 1.21132 1.21416 1.19662 1.19362 0.90715 0.84225 1.42971 0.91003 1.44873 1.02838 1.00933 1.86528 1.21719 0.83921 0.95595 0.95735 1.22843 0.97549 0.94970 1.00342 1.21291 0.95234 0.95395 0.95239 1.21268 0.94648 0.84753 0.96019 1.21392 0.99462 0.95097 0.97351 1.22010 0.97678 1.01097 0.96286 1.22639 1.02657 0.87773 0.90507 1.48190 1.35198 1.31274 1.18431 1.20713 0.84097 0.82875 0.80902 1.90694 1.66482 1.36171 1.54168 1.22551 0.93047 0.98374 0.98005 1.23254 0.96090 1.00390 0.98767 1.23191 0.98795 0.90057 0.97270 1.66501 1.01448 1.48361 1.04346 1.23884 0.93560 0.87055 1.04219 1.22697 1.01391 0.93403 0.92061 1.22573 0.95702 0.96849 1.03390 1.21939 0.97559 0.99263 0.94591 1.21286 0.89621 0.93770 0.94028 0.94293 0.91042 1.00979 0.89525 0.90631 0.95715 0.98912 0.91396 0.88945 0.93036 0.86684 0.86637 0.88426 0.91599 0.89686 0.87684 0.89202 0.87285 0.89832 0.88250 0.90205 0.90635 0.90256 0.91991 0.94296 0.89346 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 10.09 21.65 0.22 -59.38 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 3 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.24 -14.79 10.28 84.03 0.86 -13.93 16 8 H 0.07 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -34.90 3.40 -692.49 -2.36 -37.25 16 10 C 0.16 8.17 5.59 86.88 0.49 8.66 16 11 C -0.12 -4.40 5.99 31.79 0.19 -4.21 16 12 C -0.07 -2.35 0.54 -51.91 -0.03 -2.38 16 13 C 0.16 7.02 5.43 86.48 0.47 7.49 16 14 C -0.10 -2.13 4.52 30.40 0.14 -1.99 16 15 C -0.13 -2.32 5.63 30.71 0.17 -2.14 16 16 C 0.08 1.46 4.10 86.31 0.35 1.81 16 17 N -0.60 -16.97 2.59 -819.37 -2.12 -19.08 16 18 C 0.53 17.48 6.89 87.66 0.60 18.09 16 19 O -0.59 -26.95 15.70 -3.01 -0.05 -27.00 16 20 C -0.12 -2.70 0.81 -51.12 -0.04 -2.74 16 21 C -0.15 -2.80 4.68 31.63 0.15 -2.65 16 22 C 0.04 0.44 5.78 86.40 0.50 0.94 16 23 N -0.49 -6.77 6.07 -878.40 -5.33 -12.10 16 24 C 0.04 0.70 5.46 86.72 0.47 1.18 16 25 C 0.03 0.42 5.84 86.15 0.50 0.92 16 26 C -0.15 -2.36 5.56 31.30 0.17 -2.19 16 27 C -0.10 -2.34 4.61 31.64 0.15 -2.19 16 28 C 0.14 4.60 4.86 86.07 0.42 5.02 16 29 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.07 4.23 5.88 -2.39 -0.01 4.21 16 31 H -0.03 -1.63 7.91 -2.39 -0.02 -1.65 16 32 H 0.09 2.75 7.98 -2.39 -0.02 2.73 16 33 H 0.08 2.66 8.02 -2.38 -0.02 2.64 16 34 H 0.02 1.07 7.61 -2.39 -0.02 1.05 16 35 H -0.01 -0.35 7.55 -2.39 -0.02 -0.36 16 36 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.13 6.35 -2.39 -0.02 1.11 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.65 2.60 -2.39 -0.01 1.64 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.42 6.95 -2.38 -0.02 1.41 16 43 H 0.08 1.67 4.44 -2.39 -0.01 1.66 16 44 H 0.10 0.97 8.13 -2.38 -0.02 0.95 16 45 H 0.09 0.95 6.94 -2.39 -0.02 0.93 16 46 H 0.11 1.55 5.34 -2.39 -0.01 1.54 16 47 H 0.08 1.46 7.68 -2.38 -0.02 1.44 16 48 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.08 1.00 7.87 -2.39 -0.02 0.98 16 50 H 0.08 1.18 5.37 -2.39 -0.01 1.17 16 51 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 52 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 53 H 0.04 1.20 8.09 -2.39 -0.02 1.18 16 54 H 0.09 2.49 8.11 -2.38 -0.02 2.47 16 55 H 0.04 1.88 6.62 -2.39 -0.02 1.86 16 Total: -1.00 -81.51 383.19 -0.68 -82.19 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.88 Total: 16.01 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.04 Total: 6.19 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -9.58 Total: -127.82 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -81.51 -0.68 -82.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054233048.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.272 kcal (2) G-P(sol) polarization free energy of solvation -81.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds