Wall clock time and date at job start Wed Apr 1 2020 04:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46890 * 111.00699 * 2 1 4 4 C 1.46902 * 110.99439 * 123.95792 * 2 1 3 5 5 C 1.52996 * 109.47534 * 66.04466 * 4 2 1 6 6 N 1.46499 * 109.47090 * 179.97438 * 5 4 2 7 7 C 1.34268 * 125.75440 * 125.26805 * 6 5 4 8 8 C 1.38039 * 107.41694 * 180.14327 * 7 6 5 9 9 C 1.47431 * 126.41638 * 179.87299 * 8 7 6 10 10 O 1.21603 * 119.99699 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00125 * 179.71193 * 9 8 7 12 12 C 1.47387 * 135.85411 * 359.62679 * 11 9 8 13 13 C 1.52070 * 87.41072 * 154.38820 * 12 11 9 14 14 C 1.47388 * 135.85369 * 179.97438 * 11 9 8 15 15 C 1.53513 * 117.21374 * 267.27784 * 13 12 11 16 16 C 1.54632 * 102.70718 * 262.92968 * 15 13 12 17 17 N 1.47148 * 107.37179 * 339.38830 * 16 15 13 18 18 C 1.36941 * 125.57386 * 179.04156 * 17 16 15 19 19 H 1.08004 * 119.99648 * 174.82483 * 18 17 16 20 20 C 1.38814 * 120.00061 * 354.82837 * 18 17 16 21 21 N 1.31611 * 120.00040 * 7.05986 * 20 18 17 22 22 Si 1.86804 * 119.99567 * 187.06471 * 20 18 17 23 23 H 1.48501 * 109.46913 * 94.98758 * 22 20 18 24 24 H 1.48505 * 109.46878 * 214.98162 * 22 20 18 25 25 H 1.48495 * 109.47276 * 334.98351 * 22 20 18 26 26 C 1.47753 * 108.84438 * 359.08530 * 17 16 15 27 27 C 1.41294 * 107.16874 * 359.60482 * 8 7 6 28 28 N 1.30447 * 108.02640 * 0.24205 * 27 8 7 29 29 H 1.09001 * 109.47042 * 296.04834 * 1 2 3 30 30 H 1.09005 * 109.46942 * 56.04614 * 1 2 3 31 31 H 1.08991 * 109.47501 * 176.04453 * 1 2 3 32 32 H 1.08998 * 109.47321 * 183.95307 * 3 2 1 33 33 H 1.09004 * 109.47098 * 303.95643 * 3 2 1 34 34 H 1.09000 * 109.47114 * 63.95037 * 3 2 1 35 35 H 1.09000 * 109.47088 * 306.03719 * 4 2 1 36 36 H 1.09008 * 109.47002 * 186.04414 * 4 2 1 37 37 H 1.09000 * 109.47543 * 59.99532 * 5 4 2 38 38 H 1.09001 * 109.47109 * 299.99642 * 5 4 2 39 39 H 1.08001 * 126.28955 * 0.02562 * 7 6 5 40 40 H 1.08998 * 113.54682 * 269.00176 * 12 11 9 41 41 H 1.09011 * 113.54118 * 39.67882 * 12 11 9 42 42 H 1.08999 * 113.54362 * 320.32945 * 14 11 9 43 43 H 1.09003 * 113.54278 * 90.99951 * 14 11 9 44 44 H 1.09001 * 110.76572 * 21.23874 * 15 13 12 45 45 H 1.09000 * 110.76198 * 144.62453 * 15 13 12 46 46 H 1.08996 * 109.86434 * 98.83537 * 16 15 13 47 47 H 1.08994 * 109.86141 * 219.93783 * 16 15 13 48 48 H 0.97004 * 119.99824 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.40327 * 263.50735 * 26 17 16 50 50 H 1.08995 * 110.40676 * 141.08082 * 26 17 16 51 51 H 1.07999 * 125.98587 * 180.21986 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9953 -0.7661 1.1376 5 6 1.6313 -2.2427 0.9703 6 7 2.1567 -3.0067 2.1045 7 6 1.4407 -3.8070 2.9105 8 6 2.3076 -4.3319 3.8478 9 6 1.9599 -5.2623 4.9373 10 8 0.8114 -5.6383 5.0724 11 7 2.9160 -5.7002 5.7803 12 6 4.3673 -5.4936 5.9325 13 6 4.1908 -5.8285 7.4053 14 6 2.9662 -6.5990 6.9473 15 6 3.9564 -4.6564 8.3686 16 6 5.3722 -4.3894 8.9302 17 7 6.1660 -5.6104 8.7194 18 6 7.4816 -5.7745 9.0624 19 1 7.9546 -6.7380 8.9427 20 6 8.2070 -4.7024 9.5638 21 7 7.5991 -3.5684 9.8405 22 14 10.0461 -4.8695 9.8457 23 1 10.7774 -4.3533 8.6608 24 1 10.4357 -4.0882 11.0469 25 1 10.3871 -6.2998 10.0534 26 6 5.3115 -6.6300 8.0764 27 6 3.5917 -3.8153 3.5637 28 7 3.4906 -3.0300 2.5270 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0251 -0.0709 32 1 3.0829 1.3430 -0.0708 33 1 1.5899 1.9162 -0.8524 34 1 1.7045 1.8722 0.9233 35 1 1.5610 -0.3873 2.0628 36 1 3.0797 -0.6613 1.1757 37 1 2.0656 -2.6215 0.0451 38 1 0.5470 -2.3475 0.9323 39 1 0.3809 -4.0026 2.8397 40 1 4.9701 -6.2216 5.3896 41 1 4.6820 -4.4655 5.7528 42 1 2.1109 -6.4939 7.6149 43 1 3.1762 -7.6369 6.6889 44 1 3.5825 -3.7843 7.8323 45 1 3.2719 -4.9433 9.1669 46 1 5.8296 -3.5542 8.3998 47 1 5.3121 -4.1659 9.9952 48 1 8.1062 -2.8192 10.1905 49 1 4.8991 -7.3069 8.8246 50 1 5.8795 -7.1866 7.3310 51 1 4.4980 -4.0324 4.1094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073050058.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:00 Heat of formation + Delta-G solvation = 129.488562 kcal Electronic energy + Delta-G solvation = -30371.913613 eV Core-core repulsion = 26310.974629 eV Total energy + Delta-G solvation = -4060.938983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.56703 -40.41520 -38.24497 -37.85804 -35.61584 -33.92089 -32.18951 -30.62594 -29.98114 -29.12150 -28.41652 -28.11663 -26.11538 -25.85156 -24.86416 -23.77666 -22.23608 -21.91391 -20.77953 -20.27731 -19.34288 -18.41091 -17.55547 -16.77015 -16.33317 -16.26249 -15.92826 -15.65116 -15.43413 -15.13964 -14.89374 -14.69812 -14.40205 -14.06197 -13.94199 -13.78314 -13.42294 -12.99845 -12.93616 -12.89218 -12.48993 -12.36988 -12.27097 -12.20895 -12.08539 -11.91453 -11.80806 -11.67975 -11.06734 -11.00193 -10.88088 -10.62894 -10.37463 -10.15211 -10.08499 -9.85258 -9.76504 -9.64679 -9.54588 -8.99311 -8.87918 -8.57470 -8.40791 -6.83285 -5.72605 -3.04891 1.40446 2.03197 2.12185 3.03387 3.40397 3.41676 3.45918 3.47808 3.54930 4.03569 4.40123 4.46359 4.53796 4.55597 4.62830 4.66039 4.77787 4.83506 4.90418 4.97057 5.03507 5.07410 5.17747 5.30947 5.32713 5.35383 5.38107 5.42232 5.47903 5.49786 5.59775 5.68645 5.71800 5.84454 5.85298 6.04253 6.19341 6.24648 6.30969 6.37558 6.40575 6.48993 6.55394 6.62654 6.68889 6.72606 7.39398 7.55848 7.63027 7.82694 7.93668 8.24762 8.37888 9.21238 9.81671 10.47741 11.39317 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012272 B = 0.002260 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.082783 B =12387.506928 C =14012.502065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.135 3.865 6 N -0.363 5.363 7 C 0.124 3.876 8 C -0.282 4.282 9 C 0.622 3.378 10 O -0.561 6.561 11 N -0.638 5.638 12 C 0.116 3.884 13 C -0.105 4.105 14 C 0.122 3.878 15 C -0.117 4.117 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.153 3.847 27 C 0.082 3.918 28 N -0.294 5.294 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.186 0.814 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.041 0.959 48 H 0.252 0.748 49 H 0.026 0.974 50 H 0.043 0.957 51 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 4.503 -18.833 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.014 3.986 6 N -0.143 5.143 7 C -0.027 4.027 8 C -0.297 4.297 9 C 0.413 3.587 10 O -0.441 6.441 11 N -0.372 5.372 12 C -0.007 4.007 13 C -0.106 4.106 14 C 0.000 4.000 15 C -0.155 4.155 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.027 3.973 27 C -0.105 4.105 28 N -0.114 5.114 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.203 0.797 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.062 0.938 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.397 5.167 -20.182 25.324 hybrid contribution 0.297 -0.105 1.447 1.480 sum -14.100 5.062 -18.736 23.989 Atomic orbital electron populations 1.22529 0.87207 1.02479 1.01091 1.61905 1.08149 1.14592 1.42301 1.22392 1.01188 0.87887 1.00822 1.22357 1.02333 0.91878 0.92042 1.21750 0.99237 0.90951 0.86676 1.48490 1.06268 1.34997 1.24506 1.22905 0.98531 0.91295 0.89971 1.20186 0.94088 1.11508 1.03928 1.16670 0.83429 0.79455 0.79134 1.90744 1.19430 1.60509 1.73422 1.49509 1.09295 1.47337 1.31038 1.23009 0.80331 1.02244 0.95085 1.22175 0.95816 0.98356 0.94280 1.22747 0.97883 0.94300 0.85108 1.22461 1.00493 0.95597 0.96959 1.21231 0.85002 0.89524 0.98854 1.44545 1.08089 1.10217 1.70263 1.19045 0.84345 0.95770 1.36468 0.90378 1.24810 0.98114 0.95984 1.01419 1.69974 1.33892 1.03281 1.49522 0.86143 0.85350 0.77249 0.77298 1.21637 1.21861 1.20647 1.21146 0.89957 0.91753 0.94492 1.24500 0.98382 0.93742 0.93921 1.77205 0.95092 1.23261 1.15829 0.95210 0.90881 0.91140 0.90896 0.90935 0.95304 0.93911 0.88809 0.88356 0.88404 0.79683 0.89335 0.90028 0.90447 0.89792 0.92067 0.91821 0.93370 0.94044 0.93773 0.95614 0.93844 0.78891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.32 60.06 0.56 0.64 16 2 N -0.55 -3.69 5.02 -251.27 -1.26 -4.95 16 3 C 0.03 0.15 9.57 60.06 0.57 0.72 16 4 C 0.04 0.33 5.13 -3.82 -0.02 0.31 16 5 C 0.14 0.98 6.41 -4.04 -0.03 0.96 16 6 N -0.36 -3.86 3.65 -60.81 -0.22 -4.08 16 7 C 0.12 1.39 11.25 -16.56 -0.19 1.21 16 8 C -0.28 -3.87 6.13 -105.07 -0.64 -4.51 16 9 C 0.62 9.92 8.06 -12.52 -0.10 9.82 16 10 O -0.56 -10.44 17.67 5.27 0.09 -10.35 16 11 N -0.64 -9.51 3.70 -187.06 -0.69 -10.21 16 12 C 0.12 1.65 6.42 -7.34 -0.05 1.61 16 13 C -0.10 -1.67 1.06 -155.23 -0.16 -1.84 16 14 C 0.12 1.74 8.02 -7.50 -0.06 1.68 16 15 C -0.12 -2.10 6.40 -25.61 -0.16 -2.26 16 16 C 0.18 4.14 5.40 -2.83 -0.02 4.12 16 17 N -0.60 -14.55 3.41 -170.54 -0.58 -15.14 16 18 C -0.23 -6.10 10.26 -15.06 -0.15 -6.25 16 19 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -26.39 10.35 55.49 0.57 -25.81 16 22 Si 0.91 21.62 29.56 -169.99 -5.02 16.60 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.15 2.88 6.70 -3.22 -0.02 2.85 16 27 C 0.08 1.08 11.14 -16.98 -0.19 0.89 16 28 N -0.29 -3.84 12.33 30.86 0.38 -3.46 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.07 0.29 6.47 -51.93 -0.34 -0.05 16 32 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.09 0.86 8.06 -51.92 -0.42 0.44 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.48 6.47 -51.93 -0.34 0.14 16 39 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 41 H 0.08 1.17 6.21 -51.92 -0.32 0.85 16 42 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 1.24 7.30 -51.93 -0.38 0.86 16 47 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 51 H 0.19 2.35 5.21 -52.49 -0.27 2.07 16 LS Contribution 408.92 15.07 6.16 6.16 Total: -1.00 -33.35 408.92 -9.65 -43.00 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.33 Total: -1.43 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.75 Total: 9.66 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -1.80 Total: -63.64 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.35 -9.65 -43.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073050058.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.486 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds