Wall clock time and date at job start Wed Apr 1 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 112.88651 * 334.39012 * 10 9 7 12 12 C 1.53955 * 113.66415 * 105.73736 * 10 9 7 13 13 C 1.54241 * 87.18863 * 89.78569 * 12 10 9 14 14 H 1.09004 * 113.66694 * 270.26295 * 13 12 10 15 15 N 1.46507 * 113.75079 * 139.21780 * 13 12 10 16 16 C 1.34771 * 120.00138 * 107.77207 * 15 13 12 17 17 O 1.21284 * 120.00210 * 359.97438 * 16 15 13 18 18 C 1.51507 * 119.99918 * 180.02562 * 16 15 13 19 19 C 1.52462 * 108.87000 * 61.55198 * 18 16 15 20 20 C 1.52136 * 112.62489 * 171.14565 * 19 18 16 21 21 C 1.52237 * 112.68646 * 314.90495 * 20 19 18 22 22 N 1.45855 * 112.38958 * 46.65141 * 21 20 19 23 23 C 1.45843 * 113.92765 * 70.77430 * 22 21 20 24 24 C 1.52265 * 112.32902 * 289.29211 * 23 22 21 25 25 C 1.52158 * 112.62723 * 313.15148 * 24 23 22 26 26 C 1.46467 * 112.02339 * 302.26608 * 22 21 20 27 27 C 1.52905 * 113.66082 * 203.04543 * 10 9 7 28 28 C 1.52914 * 121.14057 * 144.70758 * 27 10 9 29 29 C 1.53949 * 86.78170 * 209.38018 * 28 27 10 30 30 C 1.52911 * 121.13968 * 36.14398 * 27 10 9 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.57527 * 204.34301 * 12 10 9 34 34 H 1.08994 * 113.57708 * 335.12760 * 12 10 9 35 35 H 0.97000 * 119.99484 * 287.77040 * 15 13 12 36 36 H 1.09706 * 109.14375 * 292.65331 * 19 18 16 37 37 H 1.09746 * 109.05748 * 49.72560 * 19 18 16 38 38 H 1.10574 * 108.04570 * 195.78202 * 20 19 18 39 39 H 1.08751 * 110.88149 * 79.70030 * 20 19 18 40 40 H 1.09672 * 109.11547 * 285.33467 * 21 20 19 41 41 H 1.09654 * 109.14396 * 167.99445 * 21 20 19 42 42 H 1.09633 * 109.25270 * 168.04256 * 23 22 21 43 43 H 1.09635 * 109.27984 * 50.55392 * 23 22 21 44 44 H 1.10557 * 107.91006 * 193.99718 * 24 23 22 45 45 H 1.08692 * 110.81123 * 78.02551 * 24 23 22 46 46 H 1.09708 * 109.24037 * 284.07770 * 25 24 23 47 47 H 1.09684 * 109.24849 * 166.81710 * 25 24 23 48 48 H 1.08891 * 109.93080 * 305.25815 * 26 22 21 49 49 H 1.08889 * 109.93432 * 184.26165 * 26 22 21 50 50 H 1.09000 * 113.66024 * 323.85226 * 28 27 10 51 51 H 1.08994 * 113.66194 * 94.90621 * 28 27 10 52 52 H 1.09002 * 113.57925 * 270.12615 * 29 28 27 53 53 H 1.09000 * 113.65069 * 139.35133 * 29 28 27 54 54 H 1.09005 * 113.65882 * 265.09435 * 30 27 10 55 55 H 1.08998 * 113.65980 * 36.05421 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0561 -3.5723 -0.4225 12 6 2.0295 -4.3796 1.3663 13 6 0.7454 -5.0823 0.8800 14 1 -0.1685 -4.5390 1.1202 15 7 0.6764 -6.5007 1.2402 16 6 -0.1787 -6.9121 2.1973 17 8 -0.8908 -6.1080 2.7607 18 6 -0.2496 -8.3788 2.5702 19 6 1.1091 -8.8180 3.1045 20 6 1.0782 -10.2157 3.7045 21 6 -0.1241 -10.4388 4.6114 22 7 -1.3683 -9.9733 4.0091 23 6 -1.8286 -10.7930 2.8941 24 6 -0.9497 -10.6376 1.6604 25 6 -0.6471 -9.1820 1.3368 26 6 -1.3115 -8.5520 3.6603 27 6 1.2512 -4.8341 -0.5416 28 6 1.9236 -5.9464 -1.3471 29 6 0.5768 -6.1157 -2.0734 30 6 0.2776 -4.6509 -1.7064 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.8684 -5.0592 1.5163 34 1 1.8690 -3.7113 2.2122 35 1 1.2462 -7.1437 0.7899 36 1 1.8423 -8.7909 2.2889 37 1 1.4415 -8.1040 3.8688 38 1 1.9920 -10.3476 4.3129 39 1 1.1189 -10.9731 2.9252 40 1 0.0380 -9.9112 5.5591 41 1 -0.2103 -11.5083 4.8377 42 1 -2.8575 -10.5125 2.6399 43 1 -1.8376 -11.8462 3.1985 44 1 -1.4905 -11.0741 0.8006 45 1 -0.0319 -11.2102 1.7656 46 1 -1.5320 -8.7217 0.8798 47 1 0.1644 -9.1364 0.6004 48 1 -1.0368 -7.9655 4.5357 49 1 -2.2791 -8.2230 3.2844 50 1 2.7277 -5.5939 -1.9931 51 1 2.2085 -6.8103 -0.7467 52 1 -0.0909 -6.8308 -1.5927 53 1 0.6764 -6.2851 -3.1455 54 1 -0.7523 -4.4799 -1.3930 55 1 0.6184 -3.9331 -2.4526 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078657075.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:18 Heat of formation + Delta-G solvation = -6.013364 kcal Electronic energy + Delta-G solvation = -32862.051392 eV Core-core repulsion = 28898.776947 eV Total energy + Delta-G solvation = -3963.274444 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.37684 -41.51969 -39.49360 -36.58508 -35.63144 -34.74376 -34.01577 -33.66558 -31.79643 -31.41339 -27.36477 -26.80746 -26.62888 -25.56365 -25.25084 -24.43808 -23.64074 -22.41218 -21.50579 -21.42392 -19.66937 -19.45340 -19.04907 -17.95421 -17.39073 -16.85355 -16.72230 -16.31047 -16.02802 -16.02048 -15.87751 -15.68772 -15.41688 -14.96724 -14.72801 -14.34334 -14.15044 -14.02038 -13.94655 -13.62063 -13.53350 -13.32028 -13.30638 -13.13078 -12.98808 -12.84318 -12.58461 -12.48552 -12.43708 -12.35467 -12.14641 -12.00016 -11.93664 -11.89021 -11.79289 -11.66115 -11.38850 -11.22031 -10.99213 -10.73658 -10.68252 -10.55962 -9.93221 -9.01894 -9.00251 -7.96613 -5.25756 1.44854 1.46251 1.56108 1.60124 2.13130 2.53088 3.03887 3.34951 3.39244 3.45444 3.49515 3.59998 3.61471 3.77160 3.89752 3.96725 4.02269 4.07461 4.08208 4.18672 4.20902 4.22540 4.26250 4.39556 4.50511 4.52886 4.54240 4.60632 4.68031 4.74330 4.84928 4.85743 4.93970 4.95309 4.99254 5.00442 5.00831 5.05884 5.08281 5.10021 5.10841 5.11137 5.15842 5.21009 5.27229 5.28539 5.38751 5.48232 5.50757 5.55531 5.72730 6.15859 6.25329 6.41099 6.56890 7.26646 7.30370 8.07145 8.29160 9.27029 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.002652 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.894938 B =10557.246126 C =11110.214231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.717 5.717 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.172 4.172 13 C 0.162 3.838 14 H 0.066 0.934 15 N -0.694 5.694 16 C 0.514 3.486 17 O -0.590 6.590 18 C -0.091 4.091 19 C -0.099 4.099 20 C -0.145 4.145 21 C 0.062 3.938 22 N -0.554 5.554 23 C 0.061 3.939 24 C -0.145 4.145 25 C -0.099 4.099 26 C 0.094 3.906 27 C -0.117 4.117 28 C -0.092 4.092 29 C -0.121 4.121 30 C -0.128 4.128 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.103 0.897 34 H 0.034 0.966 35 H 0.412 0.588 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.083 0.917 53 H 0.082 0.918 54 H 0.038 0.962 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -30.702 1.282 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.353 5.353 10 C 0.056 3.944 11 H 0.091 0.909 12 C -0.214 4.214 13 C 0.056 3.944 14 H 0.084 0.916 15 N -0.345 5.345 16 C 0.301 3.699 17 O -0.470 6.470 18 C -0.096 4.096 19 C -0.137 4.137 20 C -0.183 4.183 21 C -0.066 4.066 22 N -0.274 5.274 23 C -0.066 4.066 24 C -0.184 4.184 25 C -0.137 4.137 26 C -0.035 4.035 27 C -0.119 4.119 28 C -0.130 4.130 29 C -0.159 4.159 30 C -0.166 4.166 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.121 0.879 34 H 0.053 0.947 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.115 0.885 51 H 0.108 0.892 52 H 0.102 0.898 53 H 0.101 0.899 54 H 0.057 0.943 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.270 -30.071 2.011 30.315 hybrid contribution 0.233 1.975 -0.425 2.034 sum 3.504 -28.096 1.586 28.358 Atomic orbital electron populations 1.69854 1.06781 1.25930 1.59608 1.25603 0.96331 1.01250 1.03825 0.85059 0.78383 0.79754 0.76483 1.18645 1.21990 1.22511 1.19715 0.91559 0.84974 1.40771 0.90169 1.42261 1.05239 1.00574 1.87249 1.21081 0.95063 0.84392 0.93850 0.90949 1.24226 0.97859 0.99495 0.99780 1.21769 0.97147 0.81298 0.94147 0.91614 1.45860 1.41114 1.08693 1.38859 1.21516 0.78459 0.91370 0.78545 1.90715 1.44717 1.57259 1.54311 1.21237 0.99723 0.89554 0.99058 1.21307 0.93470 0.97855 1.01105 1.21936 0.99936 0.95607 1.00858 1.21878 0.86261 1.01720 0.96754 1.60195 1.32328 1.01777 1.33135 1.21875 0.98178 0.98167 0.88398 1.21938 1.02085 0.94685 0.99661 1.21309 1.02083 0.95698 0.94603 1.21570 0.96920 0.89090 0.95874 1.23382 0.98274 0.97709 0.92554 1.22528 0.97068 0.96098 0.97272 1.22778 0.97065 0.94783 1.01227 1.22577 0.97810 0.98438 0.97801 0.94137 0.79723 0.87883 0.94695 0.74902 0.89796 0.93363 0.90489 0.89519 0.91900 0.88917 0.91822 0.88950 0.90387 0.89588 0.93190 0.89721 0.92193 0.92103 0.88487 0.89207 0.89846 0.89924 0.94284 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.52 13.06 21.65 0.28 -61.23 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 7 C -0.24 -13.41 9.97 84.03 0.84 -12.57 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.72 -36.93 5.11 -321.56 -1.64 -38.57 16 10 C 0.17 6.53 4.35 45.28 0.20 6.72 16 11 H 0.07 2.72 8.11 -2.39 -0.02 2.70 16 12 C -0.17 -6.12 7.71 31.33 0.24 -5.88 16 13 C 0.16 5.48 4.05 45.38 0.18 5.67 16 14 H 0.07 2.92 7.46 -2.38 -0.02 2.91 16 15 N -0.69 -17.46 5.09 -439.74 -2.24 -19.70 16 16 C 0.51 14.84 6.35 87.92 0.56 15.40 16 17 O -0.59 -23.92 15.52 -3.04 -0.05 -23.96 16 18 C -0.09 -1.79 0.57 -52.97 -0.03 -1.82 16 19 C -0.10 -1.50 4.52 30.13 0.14 -1.37 16 20 C -0.14 -1.53 5.12 30.06 0.15 -1.37 16 21 C 0.06 0.80 5.77 86.25 0.50 1.30 16 22 N -0.55 -9.51 4.79 -902.22 -4.32 -13.83 16 23 C 0.06 0.78 5.77 86.26 0.50 1.28 16 24 C -0.14 -1.48 5.13 30.07 0.15 -1.32 16 25 C -0.10 -1.45 4.50 30.14 0.14 -1.31 16 26 C 0.09 2.19 4.18 86.44 0.36 2.55 16 27 C -0.12 -3.58 0.91 -52.31 -0.05 -3.63 16 28 C -0.09 -1.87 7.47 30.89 0.23 -1.64 16 29 C -0.12 -2.58 8.08 31.23 0.25 -2.33 16 30 C -0.13 -4.10 7.46 30.88 0.23 -3.87 16 31 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.37 21.14 7.78 -92.71 -0.72 20.42 16 33 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.41 7.22 5.84 -92.71 -0.54 6.67 16 36 H 0.08 0.96 7.86 -2.01 -0.02 0.94 16 37 H 0.05 0.92 8.14 -1.99 -0.02 0.91 16 38 H 0.08 0.67 8.27 -1.54 -0.01 0.66 16 39 H 0.09 0.65 5.70 -2.52 -0.01 0.64 16 40 H 0.06 0.94 8.20 -2.03 -0.02 0.92 16 41 H 0.09 0.86 8.10 -2.04 -0.02 0.84 16 42 H 0.06 0.93 8.19 -2.05 -0.02 0.91 16 43 H 0.09 0.85 8.10 -2.05 -0.02 0.83 16 44 H 0.08 0.64 8.27 -1.55 -0.01 0.63 16 45 H 0.09 0.63 5.69 -2.55 -0.01 0.62 16 46 H 0.05 0.91 8.14 -2.01 -0.02 0.90 16 47 H 0.08 0.92 7.76 -2.02 -0.02 0.90 16 48 H 0.06 1.64 8.07 -2.44 -0.02 1.62 16 49 H 0.06 1.65 8.08 -2.45 -0.02 1.63 16 50 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.09 1.28 6.42 -2.39 -0.02 1.26 16 52 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 54 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 55 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -74.61 409.17 -1.23 -75.84 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.35 Total: 40.60 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 5.06 Total: -8.31 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -7.92 Total: -133.33 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -74.61 -1.23 -75.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078657075.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.828 kcal (2) G-P(sol) polarization free energy of solvation -74.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds