Wall clock time and date at job start Wed Apr 1 2020 04:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99914 * 2 1 4 4 C 1.46895 * 111.00024 * 123.95505 * 2 1 3 5 5 H 1.09006 * 109.47188 * 175.13353 * 4 2 1 6 6 C 1.52997 * 109.47512 * 55.13600 * 4 2 1 7 7 N 1.46498 * 109.47501 * 62.04497 * 6 4 2 8 8 C 1.34941 * 126.04063 * 123.33516 * 7 6 4 9 9 C 1.35319 * 107.74941 * 179.97438 * 8 7 6 10 10 C 1.39866 * 107.91785 * 0.02562 * 9 8 7 11 11 N 1.30840 * 108.20534 * 359.73612 * 10 9 8 12 12 C 1.50704 * 109.47353 * 295.13540 * 4 2 1 13 13 O 1.21277 * 119.99584 * 19.03773 * 12 4 2 14 14 N 1.34770 * 120.00063 * 199.04527 * 12 4 2 15 15 C 1.47808 * 135.01581 * 359.97438 * 14 12 4 16 16 C 1.54655 * 85.79329 * 153.77561 * 15 14 12 17 17 H 1.08999 * 114.44137 * 140.42756 * 16 15 14 18 18 C 1.53016 * 110.83164 * 270.22840 * 16 15 14 19 19 C 1.53101 * 109.44506 * 143.88652 * 18 16 15 20 20 N 1.46614 * 108.05521 * 301.00072 * 19 18 16 21 21 C 1.36938 * 119.89379 * 237.35396 * 20 19 18 22 22 H 1.08001 * 119.99721 * 148.72836 * 21 20 19 23 23 C 1.38811 * 119.99735 * 328.72913 * 21 20 19 24 24 N 1.31618 * 119.99641 * 160.29981 * 23 21 20 25 25 Si 1.86792 * 120.00098 * 340.29652 * 23 21 20 26 26 H 1.48500 * 109.47027 * 85.37938 * 25 23 21 27 27 H 1.48499 * 109.47413 * 205.37825 * 25 23 21 28 28 H 1.48498 * 109.47612 * 325.37889 * 25 23 21 29 29 C 1.45779 * 120.15229 * 57.29669 * 20 19 18 30 30 C 1.46819 * 135.01290 * 179.97438 * 14 12 4 31 31 H 1.09006 * 111.56293 * 94.51061 * 30 14 12 32 32 H 1.08996 * 109.47046 * 302.27511 * 1 2 3 33 33 H 1.09002 * 109.47288 * 62.28248 * 1 2 3 34 34 H 1.09005 * 109.46952 * 182.27933 * 1 2 3 35 35 H 1.09002 * 109.46690 * 183.00722 * 3 2 1 36 36 H 1.08994 * 109.46957 * 303.00076 * 3 2 1 37 37 H 1.08997 * 109.46833 * 63.00434 * 3 2 1 38 38 H 1.09003 * 109.47415 * 182.04798 * 6 4 2 39 39 H 1.09006 * 109.47229 * 302.04793 * 6 4 2 40 40 H 1.08001 * 126.12802 * 0.02562 * 8 7 6 41 41 H 1.07996 * 126.03976 * 179.97438 * 9 8 7 42 42 H 1.08004 * 125.90094 * 179.97438 * 10 9 8 43 43 H 1.08995 * 113.82132 * 39.55110 * 15 14 12 44 44 H 1.09007 * 113.93097 * 268.00138 * 15 14 12 45 45 H 1.09006 * 109.47277 * 23.89911 * 18 16 15 46 46 H 1.08995 * 109.47840 * 263.88201 * 18 16 15 47 47 H 1.09002 * 109.75491 * 60.65896 * 19 18 16 48 48 H 1.08996 * 109.75344 * 181.34698 * 19 18 16 49 49 H 0.96999 * 119.99981 * 179.97438 * 24 23 21 50 50 H 1.09002 * 108.70564 * 199.79262 * 29 20 19 51 51 H 1.09001 * 108.59561 * 81.71373 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0817 -0.8228 1.0658 6 6 1.4085 -2.1787 1.1166 7 7 1.8217 -2.8611 -0.1121 8 6 2.4845 -4.0343 -0.1843 9 6 2.6755 -4.3204 -1.4930 10 6 2.1106 -3.2863 -2.2465 11 7 1.5938 -2.4136 -1.4199 12 6 1.6121 -0.0818 2.4244 13 8 0.7015 0.7192 2.4374 14 7 2.2811 -0.3600 3.5608 15 6 3.4063 -1.2484 3.9207 16 6 3.6779 -0.2498 5.0701 17 1 3.9680 -0.7148 6.0123 18 6 4.6351 0.8545 4.6166 19 6 4.2330 2.1784 5.2722 20 7 2.8545 2.4817 4.8754 21 6 2.5715 3.6602 4.2380 22 1 1.7644 3.7064 3.5218 23 6 3.3219 4.7953 4.5124 24 7 3.3309 5.7996 3.6618 25 14 4.3188 4.8974 6.0887 26 1 5.6419 4.2563 5.8800 27 1 4.5121 6.3219 6.4608 28 1 3.5949 4.1950 7.1787 29 6 1.7856 1.5313 5.1568 30 6 2.1945 0.0938 4.9544 31 1 1.5790 -0.5750 5.5560 32 1 -0.3633 0.5487 0.8689 33 1 -0.3634 0.4780 -0.9097 34 1 -0.3633 -1.0269 0.0409 35 1 3.0837 1.3428 -0.0539 36 1 1.6031 1.9112 -0.8618 37 1 1.6901 1.8778 0.9157 38 1 1.7706 -2.7356 1.9808 39 1 0.3205 -2.1207 1.1516 40 1 2.8044 -4.6374 0.6526 41 1 3.1765 -5.1926 -1.8862 42 1 2.0992 -3.2213 -3.3245 43 1 4.1970 -1.2829 3.1714 44 1 3.0977 -2.2371 4.2604 45 1 4.5852 0.9560 3.5324 46 1 5.6524 0.5973 4.9112 47 1 4.2923 2.0854 6.3566 48 1 4.8972 2.9736 4.9339 49 1 3.8549 6.5930 3.8536 50 1 0.9420 1.7502 4.5021 51 1 1.4678 1.6619 6.1912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084405456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:32 Heat of formation + Delta-G solvation = 148.883309 kcal Electronic energy + Delta-G solvation = -33089.988942 eV Core-core repulsion = 29029.890978 eV Total energy + Delta-G solvation = -4060.097964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.29349 -40.79213 -39.07761 -36.13516 -35.60202 -33.44526 -32.00518 -31.20666 -30.38765 -29.90664 -28.40134 -27.45213 -27.11748 -24.87311 -23.83223 -23.60316 -22.07949 -21.34837 -21.05694 -20.69616 -19.67416 -18.01383 -17.32523 -17.18195 -16.59741 -16.11578 -15.79122 -15.56159 -15.29206 -14.97108 -14.46963 -14.19277 -13.97108 -13.84181 -13.70180 -13.65561 -13.57601 -12.99174 -12.85141 -12.77846 -12.53838 -12.29780 -12.19233 -12.00895 -11.75709 -11.63592 -11.42865 -11.38606 -11.18832 -11.08364 -10.93869 -10.76041 -10.48412 -10.40336 -10.12947 -9.77829 -9.59696 -9.47642 -9.41487 -8.68135 -8.62162 -8.41235 -7.79721 -6.91362 -5.92269 -3.31160 1.88894 2.35679 2.79867 2.87724 2.93650 3.28747 3.46997 3.50120 3.94097 4.30515 4.40788 4.45258 4.53379 4.67987 4.73435 4.84837 4.91405 4.94434 5.02438 5.12374 5.28096 5.32300 5.36922 5.47107 5.49715 5.53098 5.57831 5.72196 5.73956 5.76697 5.85853 5.90865 5.95654 5.98617 6.11426 6.15839 6.22052 6.27962 6.36976 6.44793 6.54409 6.62952 6.64412 6.74358 6.86903 6.92321 7.08562 7.19313 7.76615 7.91314 8.05692 8.35683 8.40505 9.00718 9.75171 10.09763 11.23875 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.003455 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.844526 B = 8101.594365 C = 8849.179973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.494 5.494 3 C 0.014 3.986 4 C 0.061 3.939 5 H 0.102 0.898 6 C 0.147 3.853 7 N -0.363 5.363 8 C 0.041 3.959 9 C -0.275 4.275 10 C 0.024 3.976 11 N -0.243 5.243 12 C 0.515 3.485 13 O -0.516 6.516 14 N -0.628 5.628 15 C 0.092 3.908 16 C -0.107 4.107 17 H 0.090 0.910 18 C -0.117 4.117 19 C 0.125 3.875 20 N -0.596 5.596 21 C -0.255 4.255 22 H 0.083 0.917 23 C 0.025 3.975 24 N -0.908 5.908 25 Si 0.884 3.116 26 H -0.286 1.286 27 H -0.304 1.304 28 H -0.274 1.274 29 C 0.144 3.856 30 C 0.129 3.871 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.168 0.832 41 H 0.142 0.858 42 H 0.178 0.822 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.025 0.975 48 H 0.078 0.922 49 H 0.262 0.738 50 H 0.079 0.921 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -22.882 -3.368 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.216 5.216 3 C -0.134 4.134 4 C -0.053 4.053 5 H 0.119 0.881 6 C 0.025 3.975 7 N -0.145 5.145 8 C -0.105 4.105 9 C -0.304 4.304 10 C -0.163 4.163 11 N -0.063 5.063 12 C 0.301 3.699 13 O -0.391 6.391 14 N -0.365 5.365 15 C -0.031 4.031 16 C -0.127 4.127 17 H 0.108 0.892 18 C -0.156 4.156 19 C -0.001 4.001 20 N -0.319 5.319 21 C -0.383 4.383 22 H 0.100 0.900 23 C -0.174 4.174 24 N -0.550 5.550 25 Si 0.714 3.286 26 H -0.214 1.214 27 H -0.232 1.232 28 H -0.199 1.199 29 C 0.017 3.983 30 C 0.025 3.975 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.185 0.815 41 H 0.160 0.840 42 H 0.195 0.805 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.473 -21.257 -3.821 21.603 hybrid contribution 1.014 -0.385 1.538 1.882 sum 0.540 -21.642 -2.283 21.769 Atomic orbital electron populations 1.22676 0.87146 1.01494 1.02605 1.62547 1.08984 1.14393 1.35670 1.22515 0.99882 0.88304 1.02675 1.22082 1.01646 0.93265 0.88259 0.88061 1.21631 1.01417 0.91460 0.83029 1.48512 1.43952 1.16357 1.05716 1.22515 0.98868 0.89750 0.99327 1.21448 1.12967 1.03855 0.92178 1.23974 0.99117 0.93051 1.00121 1.77768 1.21643 1.20757 0.86125 1.21266 0.81552 0.83099 0.83940 1.90651 1.29431 1.34642 1.84421 1.50095 1.35222 1.42974 1.08171 1.23616 0.88415 0.94329 0.96777 1.22885 0.95671 0.96264 0.97837 0.89153 1.21854 0.96430 0.95774 1.01569 1.21305 0.87672 0.95124 0.95969 1.43820 1.00830 1.18231 1.69068 1.18890 1.18003 0.84674 1.16740 0.89989 1.25335 0.98859 0.95431 0.97759 1.69837 1.42812 1.07592 1.34807 0.87002 0.79705 0.75545 0.86324 1.21400 1.23203 1.19902 1.20229 0.92887 0.86430 0.98737 1.22389 0.95675 0.98646 0.80804 0.90191 0.91530 0.91915 0.92524 0.92185 0.91318 0.92571 0.88309 0.88838 0.81487 0.84028 0.80526 0.90292 0.90016 0.91536 0.92282 0.95741 0.90375 0.92818 0.90253 0.95860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.76 60.07 0.53 0.65 16 2 N -0.49 -7.60 3.85 -244.59 -0.94 -8.54 16 3 C 0.01 0.24 9.22 60.07 0.55 0.80 16 4 C 0.06 0.84 2.28 -68.87 -0.16 0.68 16 5 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 6 C 0.15 1.58 5.54 -4.04 -0.02 1.55 16 7 N -0.36 -4.13 3.66 -61.37 -0.22 -4.36 16 8 C 0.04 0.37 11.45 -17.23 -0.20 0.18 16 9 C -0.27 -2.59 10.80 -40.01 -0.43 -3.02 16 10 C 0.02 0.27 12.02 -17.37 -0.21 0.06 16 11 N -0.24 -3.24 11.26 30.62 0.34 -2.90 16 12 C 0.51 8.29 6.37 -10.99 -0.07 8.22 16 13 O -0.52 -10.34 11.14 5.56 0.06 -10.28 16 14 N -0.63 -8.98 3.34 -173.93 -0.58 -9.56 16 15 C 0.09 0.93 7.97 -3.00 -0.02 0.91 16 16 C -0.11 -1.36 4.39 -89.95 -0.40 -1.76 16 17 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -1.87 5.66 -26.67 -0.15 -2.03 16 19 C 0.12 2.61 4.17 -3.93 -0.02 2.59 16 20 N -0.60 -14.08 2.73 -174.97 -0.48 -14.55 16 21 C -0.25 -7.27 9.93 -15.06 -0.15 -7.41 16 22 H 0.08 2.63 8.04 -52.49 -0.42 2.20 16 23 C 0.02 0.73 5.20 -17.43 -0.09 0.64 16 24 N -0.91 -28.24 13.97 55.49 0.78 -27.46 16 25 Si 0.88 22.34 24.52 -169.99 -4.17 18.17 16 26 H -0.29 -6.83 6.33 56.52 0.36 -6.47 16 27 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 28 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.14 2.90 6.17 -5.53 -0.03 2.86 16 30 C 0.13 1.94 4.24 -69.55 -0.29 1.64 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.16 5.38 -51.93 -0.28 0.88 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.79 5.83 -51.93 -0.30 0.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.18 6.01 -51.93 -0.31 0.86 16 38 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.09 1.06 6.08 -51.93 -0.32 0.74 16 40 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.08 0.75 7.97 -51.93 -0.41 0.34 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16 48 H 0.08 1.83 4.39 -51.93 -0.23 1.61 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.08 1.82 6.34 -51.93 -0.33 1.49 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -35.04 388.28 -8.59 -43.63 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.06 Total: 3.44 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.16 Total: 6.56 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.10 Total: -67.37 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.28 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.17 Total: 18.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.04 -8.59 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084405456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.510 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds