Wall clock time and date at job start Wed Apr 1 2020 04:45:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46901 * 110.99914 * 2 1
4 4 C 1.46895 * 111.00024 * 123.95505 * 2 1 3
5 5 H 1.09006 * 109.47188 * 175.13353 * 4 2 1
6 6 C 1.52997 * 109.47512 * 55.13600 * 4 2 1
7 7 N 1.46498 * 109.47501 * 62.04497 * 6 4 2
8 8 C 1.34941 * 126.04063 * 123.33516 * 7 6 4
9 9 C 1.35319 * 107.74941 * 179.97438 * 8 7 6
10 10 C 1.39866 * 107.91785 * 0.02562 * 9 8 7
11 11 N 1.30840 * 108.20534 * 359.73612 * 10 9 8
12 12 C 1.50704 * 109.47353 * 295.13540 * 4 2 1
13 13 O 1.21277 * 119.99584 * 19.03773 * 12 4 2
14 14 N 1.34770 * 120.00063 * 199.04527 * 12 4 2
15 15 C 1.47808 * 135.01581 * 359.97438 * 14 12 4
16 16 C 1.54655 * 85.79329 * 153.77561 * 15 14 12
17 17 H 1.08999 * 114.44137 * 140.42756 * 16 15 14
18 18 C 1.53016 * 110.83164 * 270.22840 * 16 15 14
19 19 C 1.53101 * 109.44506 * 143.88652 * 18 16 15
20 20 N 1.46614 * 108.05521 * 301.00072 * 19 18 16
21 21 C 1.36938 * 119.89379 * 237.35396 * 20 19 18
22 22 H 1.08001 * 119.99721 * 148.72836 * 21 20 19
23 23 C 1.38811 * 119.99735 * 328.72913 * 21 20 19
24 24 N 1.31618 * 119.99641 * 160.29981 * 23 21 20
25 25 Si 1.86792 * 120.00098 * 340.29652 * 23 21 20
26 26 H 1.48500 * 109.47027 * 85.37938 * 25 23 21
27 27 H 1.48499 * 109.47413 * 205.37825 * 25 23 21
28 28 H 1.48498 * 109.47612 * 325.37889 * 25 23 21
29 29 C 1.45779 * 120.15229 * 57.29669 * 20 19 18
30 30 C 1.46819 * 135.01290 * 179.97438 * 14 12 4
31 31 H 1.09006 * 111.56293 * 94.51061 * 30 14 12
32 32 H 1.08996 * 109.47046 * 302.27511 * 1 2 3
33 33 H 1.09002 * 109.47288 * 62.28248 * 1 2 3
34 34 H 1.09005 * 109.46952 * 182.27933 * 1 2 3
35 35 H 1.09002 * 109.46690 * 183.00722 * 3 2 1
36 36 H 1.08994 * 109.46957 * 303.00076 * 3 2 1
37 37 H 1.08997 * 109.46833 * 63.00434 * 3 2 1
38 38 H 1.09003 * 109.47415 * 182.04798 * 6 4 2
39 39 H 1.09006 * 109.47229 * 302.04793 * 6 4 2
40 40 H 1.08001 * 126.12802 * 0.02562 * 8 7 6
41 41 H 1.07996 * 126.03976 * 179.97438 * 9 8 7
42 42 H 1.08004 * 125.90094 * 179.97438 * 10 9 8
43 43 H 1.08995 * 113.82132 * 39.55110 * 15 14 12
44 44 H 1.09007 * 113.93097 * 268.00138 * 15 14 12
45 45 H 1.09006 * 109.47277 * 23.89911 * 18 16 15
46 46 H 1.08995 * 109.47840 * 263.88201 * 18 16 15
47 47 H 1.09002 * 109.75491 * 60.65896 * 19 18 16
48 48 H 1.08996 * 109.75344 * 181.34698 * 19 18 16
49 49 H 0.96999 * 119.99981 * 179.97438 * 24 23 21
50 50 H 1.09002 * 108.70564 * 199.79262 * 29 20 19
51 51 H 1.09001 * 108.59561 * 81.71373 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7660 1.1375
5 1 3.0817 -0.8228 1.0658
6 6 1.4085 -2.1787 1.1166
7 7 1.8217 -2.8611 -0.1121
8 6 2.4845 -4.0343 -0.1843
9 6 2.6755 -4.3204 -1.4930
10 6 2.1106 -3.2863 -2.2465
11 7 1.5938 -2.4136 -1.4199
12 6 1.6121 -0.0818 2.4244
13 8 0.7015 0.7192 2.4374
14 7 2.2811 -0.3600 3.5608
15 6 3.4063 -1.2484 3.9207
16 6 3.6779 -0.2498 5.0701
17 1 3.9680 -0.7148 6.0123
18 6 4.6351 0.8545 4.6166
19 6 4.2330 2.1784 5.2722
20 7 2.8545 2.4817 4.8754
21 6 2.5715 3.6602 4.2380
22 1 1.7644 3.7064 3.5218
23 6 3.3219 4.7953 4.5124
24 7 3.3309 5.7996 3.6618
25 14 4.3188 4.8974 6.0887
26 1 5.6419 4.2563 5.8800
27 1 4.5121 6.3219 6.4608
28 1 3.5949 4.1950 7.1787
29 6 1.7856 1.5313 5.1568
30 6 2.1945 0.0938 4.9544
31 1 1.5790 -0.5750 5.5560
32 1 -0.3633 0.5487 0.8689
33 1 -0.3634 0.4780 -0.9097
34 1 -0.3633 -1.0269 0.0409
35 1 3.0837 1.3428 -0.0539
36 1 1.6031 1.9112 -0.8618
37 1 1.6901 1.8778 0.9157
38 1 1.7706 -2.7356 1.9808
39 1 0.3205 -2.1207 1.1516
40 1 2.8044 -4.6374 0.6526
41 1 3.1765 -5.1926 -1.8862
42 1 2.0992 -3.2213 -3.3245
43 1 4.1970 -1.2829 3.1714
44 1 3.0977 -2.2371 4.2604
45 1 4.5852 0.9560 3.5324
46 1 5.6524 0.5973 4.9112
47 1 4.2923 2.0854 6.3566
48 1 4.8972 2.9736 4.9339
49 1 3.8549 6.5930 3.8536
50 1 0.9420 1.7502 4.5021
51 1 1.4678 1.6619 6.1912
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001084405456.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:32
Heat of formation + Delta-G solvation = 148.883309 kcal
Electronic energy + Delta-G solvation = -33089.988942 eV
Core-core repulsion = 29029.890978 eV
Total energy + Delta-G solvation = -4060.097964 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-41.29349 -40.79213 -39.07761 -36.13516 -35.60202 -33.44526 -32.00518 -31.20666
-30.38765 -29.90664 -28.40134 -27.45213 -27.11748 -24.87311 -23.83223 -23.60316
-22.07949 -21.34837 -21.05694 -20.69616 -19.67416 -18.01383 -17.32523 -17.18195
-16.59741 -16.11578 -15.79122 -15.56159 -15.29206 -14.97108 -14.46963 -14.19277
-13.97108 -13.84181 -13.70180 -13.65561 -13.57601 -12.99174 -12.85141 -12.77846
-12.53838 -12.29780 -12.19233 -12.00895 -11.75709 -11.63592 -11.42865 -11.38606
-11.18832 -11.08364 -10.93869 -10.76041 -10.48412 -10.40336 -10.12947 -9.77829
-9.59696 -9.47642 -9.41487 -8.68135 -8.62162 -8.41235 -7.79721 -6.91362
-5.92269 -3.31160 1.88894 2.35679 2.79867 2.87724 2.93650 3.28747
3.46997 3.50120 3.94097 4.30515 4.40788 4.45258 4.53379 4.67987
4.73435 4.84837 4.91405 4.94434 5.02438 5.12374 5.28096 5.32300
5.36922 5.47107 5.49715 5.53098 5.57831 5.72196 5.73956 5.76697
5.85853 5.90865 5.95654 5.98617 6.11426 6.15839 6.22052 6.27962
6.36976 6.44793 6.54409 6.62952 6.64412 6.74358 6.86903 6.92321
7.08562 7.19313 7.76615 7.91314 8.05692 8.35683 8.40505 9.00718
9.75171 10.09763 11.23875
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.016585 B = 0.003455 C = 0.003163
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1687.844526 B = 8101.594365 C = 8849.179973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.008 3.992
2 N -0.494 5.494
3 C 0.014 3.986
4 C 0.061 3.939
5 H 0.102 0.898
6 C 0.147 3.853
7 N -0.363 5.363
8 C 0.041 3.959
9 C -0.275 4.275
10 C 0.024 3.976
11 N -0.243 5.243
12 C 0.515 3.485
13 O -0.516 6.516
14 N -0.628 5.628
15 C 0.092 3.908
16 C -0.107 4.107
17 H 0.090 0.910
18 C -0.117 4.117
19 C 0.125 3.875
20 N -0.596 5.596
21 C -0.255 4.255
22 H 0.083 0.917
23 C 0.025 3.975
24 N -0.908 5.908
25 Si 0.884 3.116
26 H -0.286 1.286
27 H -0.304 1.304
28 H -0.274 1.274
29 C 0.144 3.856
30 C 0.129 3.871
31 H 0.080 0.920
32 H 0.066 0.934
33 H 0.062 0.938
34 H 0.056 0.944
35 H 0.059 0.941
36 H 0.068 0.932
37 H 0.056 0.944
38 H 0.099 0.901
39 H 0.094 0.906
40 H 0.168 0.832
41 H 0.142 0.858
42 H 0.178 0.822
43 H 0.079 0.921
44 H 0.082 0.918
45 H 0.066 0.934
46 H 0.059 0.941
47 H 0.025 0.975
48 H 0.078 0.922
49 H 0.262 0.738
50 H 0.079 0.921
51 H 0.024 0.976
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.652 -22.882 -3.368 23.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 N -0.216 5.216
3 C -0.134 4.134
4 C -0.053 4.053
5 H 0.119 0.881
6 C 0.025 3.975
7 N -0.145 5.145
8 C -0.105 4.105
9 C -0.304 4.304
10 C -0.163 4.163
11 N -0.063 5.063
12 C 0.301 3.699
13 O -0.391 6.391
14 N -0.365 5.365
15 C -0.031 4.031
16 C -0.127 4.127
17 H 0.108 0.892
18 C -0.156 4.156
19 C -0.001 4.001
20 N -0.319 5.319
21 C -0.383 4.383
22 H 0.100 0.900
23 C -0.174 4.174
24 N -0.550 5.550
25 Si 0.714 3.286
26 H -0.214 1.214
27 H -0.232 1.232
28 H -0.199 1.199
29 C 0.017 3.983
30 C 0.025 3.975
31 H 0.098 0.902
32 H 0.085 0.915
33 H 0.081 0.919
34 H 0.075 0.925
35 H 0.078 0.922
36 H 0.087 0.913
37 H 0.074 0.926
38 H 0.117 0.883
39 H 0.112 0.888
40 H 0.185 0.815
41 H 0.160 0.840
42 H 0.195 0.805
43 H 0.097 0.903
44 H 0.100 0.900
45 H 0.085 0.915
46 H 0.077 0.923
47 H 0.043 0.957
48 H 0.096 0.904
49 H 0.072 0.928
50 H 0.097 0.903
51 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges -0.473 -21.257 -3.821 21.603
hybrid contribution 1.014 -0.385 1.538 1.882
sum 0.540 -21.642 -2.283 21.769
Atomic orbital electron populations
1.22676 0.87146 1.01494 1.02605 1.62547 1.08984 1.14393 1.35670
1.22515 0.99882 0.88304 1.02675 1.22082 1.01646 0.93265 0.88259
0.88061 1.21631 1.01417 0.91460 0.83029 1.48512 1.43952 1.16357
1.05716 1.22515 0.98868 0.89750 0.99327 1.21448 1.12967 1.03855
0.92178 1.23974 0.99117 0.93051 1.00121 1.77768 1.21643 1.20757
0.86125 1.21266 0.81552 0.83099 0.83940 1.90651 1.29431 1.34642
1.84421 1.50095 1.35222 1.42974 1.08171 1.23616 0.88415 0.94329
0.96777 1.22885 0.95671 0.96264 0.97837 0.89153 1.21854 0.96430
0.95774 1.01569 1.21305 0.87672 0.95124 0.95969 1.43820 1.00830
1.18231 1.69068 1.18890 1.18003 0.84674 1.16740 0.89989 1.25335
0.98859 0.95431 0.97759 1.69837 1.42812 1.07592 1.34807 0.87002
0.79705 0.75545 0.86324 1.21400 1.23203 1.19902 1.20229 0.92887
0.86430 0.98737 1.22389 0.95675 0.98646 0.80804 0.90191 0.91530
0.91915 0.92524 0.92185 0.91318 0.92571 0.88309 0.88838 0.81487
0.84028 0.80526 0.90292 0.90016 0.91536 0.92282 0.95741 0.90375
0.92818 0.90253 0.95860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.13 8.76 60.07 0.53 0.65 16
2 N -0.49 -7.60 3.85 -244.59 -0.94 -8.54 16
3 C 0.01 0.24 9.22 60.07 0.55 0.80 16
4 C 0.06 0.84 2.28 -68.87 -0.16 0.68 16
5 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16
6 C 0.15 1.58 5.54 -4.04 -0.02 1.55 16
7 N -0.36 -4.13 3.66 -61.37 -0.22 -4.36 16
8 C 0.04 0.37 11.45 -17.23 -0.20 0.18 16
9 C -0.27 -2.59 10.80 -40.01 -0.43 -3.02 16
10 C 0.02 0.27 12.02 -17.37 -0.21 0.06 16
11 N -0.24 -3.24 11.26 30.62 0.34 -2.90 16
12 C 0.51 8.29 6.37 -10.99 -0.07 8.22 16
13 O -0.52 -10.34 11.14 5.56 0.06 -10.28 16
14 N -0.63 -8.98 3.34 -173.93 -0.58 -9.56 16
15 C 0.09 0.93 7.97 -3.00 -0.02 0.91 16
16 C -0.11 -1.36 4.39 -89.95 -0.40 -1.76 16
17 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16
18 C -0.12 -1.87 5.66 -26.67 -0.15 -2.03 16
19 C 0.12 2.61 4.17 -3.93 -0.02 2.59 16
20 N -0.60 -14.08 2.73 -174.97 -0.48 -14.55 16
21 C -0.25 -7.27 9.93 -15.06 -0.15 -7.41 16
22 H 0.08 2.63 8.04 -52.49 -0.42 2.20 16
23 C 0.02 0.73 5.20 -17.43 -0.09 0.64 16
24 N -0.91 -28.24 13.97 55.49 0.78 -27.46 16
25 Si 0.88 22.34 24.52 -169.99 -4.17 18.17 16
26 H -0.29 -6.83 6.33 56.52 0.36 -6.47 16
27 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16
28 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16
29 C 0.14 2.90 6.17 -5.53 -0.03 2.86 16
30 C 0.13 1.94 4.24 -69.55 -0.29 1.64 16
31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.07 1.16 5.38 -51.93 -0.28 0.88 16
33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
34 H 0.06 0.79 5.83 -51.93 -0.30 0.49 16
35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
37 H 0.06 1.18 6.01 -51.93 -0.31 0.86 16
38 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16
39 H 0.09 1.06 6.08 -51.93 -0.32 0.74 16
40 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16
41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16
42 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16
43 H 0.08 0.75 7.97 -51.93 -0.41 0.34 16
44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
45 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16
46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
47 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16
48 H 0.08 1.83 4.39 -51.93 -0.23 1.61 16
49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16
50 H 0.08 1.82 6.34 -51.93 -0.33 1.49 16
51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
LS Contribution 388.28 15.07 5.85 5.85
Total: -1.00 -35.04 388.28 -8.59 -43.63
By element:
Atomic # 1 Polarization: 11.51 SS G_CDS: -8.06 Total: 3.44 kcal
Atomic # 6 Polarization: 7.72 SS G_CDS: -1.16 Total: 6.56 kcal
Atomic # 7 Polarization: -66.27 SS G_CDS: -1.10 Total: -67.37 kcal
Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.28 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -4.17 Total: 18.17 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -35.04 -8.59 -43.63 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084405456.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 192.510 kcal
(2) G-P(sol) polarization free energy of solvation -35.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) 148.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds