Wall clock time and date at job start Wed Apr 1 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99914 * 2 1 4 4 C 1.46895 * 111.00024 * 123.95505 * 2 1 3 5 5 H 1.09006 * 109.47188 * 175.13353 * 4 2 1 6 6 C 1.52997 * 109.47512 * 55.13600 * 4 2 1 7 7 N 1.46498 * 109.47501 * 62.04497 * 6 4 2 8 8 C 1.34941 * 126.04063 * 123.33516 * 7 6 4 9 9 C 1.35319 * 107.74941 * 179.97438 * 8 7 6 10 10 C 1.39866 * 107.91785 * 0.02562 * 9 8 7 11 11 N 1.30840 * 108.20534 * 359.73612 * 10 9 8 12 12 C 1.50704 * 109.47353 * 295.13540 * 4 2 1 13 13 O 1.21277 * 119.99584 * 19.03773 * 12 4 2 14 14 N 1.34770 * 120.00063 * 199.04527 * 12 4 2 15 15 C 1.47808 * 135.01581 * 359.97438 * 14 12 4 16 16 C 1.54655 * 85.79329 * 153.77561 * 15 14 12 17 17 H 1.08999 * 114.44137 * 140.42756 * 16 15 14 18 18 C 1.53016 * 110.83164 * 270.22840 * 16 15 14 19 19 C 1.53101 * 109.44506 * 143.88652 * 18 16 15 20 20 N 1.46614 * 108.05521 * 301.00072 * 19 18 16 21 21 C 1.36938 * 119.89379 * 237.35396 * 20 19 18 22 22 H 1.08001 * 119.99721 * 148.72836 * 21 20 19 23 23 C 1.38811 * 119.99735 * 328.72913 * 21 20 19 24 24 N 1.31618 * 119.99641 * 160.29981 * 23 21 20 25 25 Si 1.86792 * 120.00098 * 340.29652 * 23 21 20 26 26 H 1.48500 * 109.47027 * 85.37938 * 25 23 21 27 27 H 1.48499 * 109.47413 * 205.37825 * 25 23 21 28 28 H 1.48498 * 109.47612 * 325.37889 * 25 23 21 29 29 C 1.45779 * 120.15229 * 57.29669 * 20 19 18 30 30 C 1.46819 * 135.01290 * 179.97438 * 14 12 4 31 31 H 1.09006 * 111.56293 * 94.51061 * 30 14 12 32 32 H 1.08996 * 109.47046 * 302.27511 * 1 2 3 33 33 H 1.09002 * 109.47288 * 62.28248 * 1 2 3 34 34 H 1.09005 * 109.46952 * 182.27933 * 1 2 3 35 35 H 1.09002 * 109.46690 * 183.00722 * 3 2 1 36 36 H 1.08994 * 109.46957 * 303.00076 * 3 2 1 37 37 H 1.08997 * 109.46833 * 63.00434 * 3 2 1 38 38 H 1.09003 * 109.47415 * 182.04798 * 6 4 2 39 39 H 1.09006 * 109.47229 * 302.04793 * 6 4 2 40 40 H 1.08001 * 126.12802 * 0.02562 * 8 7 6 41 41 H 1.07996 * 126.03976 * 179.97438 * 9 8 7 42 42 H 1.08004 * 125.90094 * 179.97438 * 10 9 8 43 43 H 1.08995 * 113.82132 * 39.55110 * 15 14 12 44 44 H 1.09007 * 113.93097 * 268.00138 * 15 14 12 45 45 H 1.09006 * 109.47277 * 23.89911 * 18 16 15 46 46 H 1.08995 * 109.47840 * 263.88201 * 18 16 15 47 47 H 1.09002 * 109.75491 * 60.65896 * 19 18 16 48 48 H 1.08996 * 109.75344 * 181.34698 * 19 18 16 49 49 H 0.96999 * 119.99981 * 179.97438 * 24 23 21 50 50 H 1.09002 * 108.70564 * 199.79262 * 29 20 19 51 51 H 1.09001 * 108.59561 * 81.71373 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0817 -0.8228 1.0658 6 6 1.4085 -2.1787 1.1166 7 7 1.8217 -2.8611 -0.1121 8 6 2.4845 -4.0343 -0.1843 9 6 2.6755 -4.3204 -1.4930 10 6 2.1106 -3.2863 -2.2465 11 7 1.5938 -2.4136 -1.4199 12 6 1.6121 -0.0818 2.4244 13 8 0.7015 0.7192 2.4374 14 7 2.2811 -0.3600 3.5608 15 6 3.4063 -1.2484 3.9207 16 6 3.6779 -0.2498 5.0701 17 1 3.9680 -0.7148 6.0123 18 6 4.6351 0.8545 4.6166 19 6 4.2330 2.1784 5.2722 20 7 2.8545 2.4817 4.8754 21 6 2.5715 3.6602 4.2380 22 1 1.7644 3.7064 3.5218 23 6 3.3219 4.7953 4.5124 24 7 3.3309 5.7996 3.6618 25 14 4.3188 4.8974 6.0887 26 1 5.6419 4.2563 5.8800 27 1 4.5121 6.3219 6.4608 28 1 3.5949 4.1950 7.1787 29 6 1.7856 1.5313 5.1568 30 6 2.1945 0.0938 4.9544 31 1 1.5790 -0.5750 5.5560 32 1 -0.3633 0.5487 0.8689 33 1 -0.3634 0.4780 -0.9097 34 1 -0.3633 -1.0269 0.0409 35 1 3.0837 1.3428 -0.0539 36 1 1.6031 1.9112 -0.8618 37 1 1.6901 1.8778 0.9157 38 1 1.7706 -2.7356 1.9808 39 1 0.3205 -2.1207 1.1516 40 1 2.8044 -4.6374 0.6526 41 1 3.1765 -5.1926 -1.8862 42 1 2.0992 -3.2213 -3.3245 43 1 4.1970 -1.2829 3.1714 44 1 3.0977 -2.2371 4.2604 45 1 4.5852 0.9560 3.5324 46 1 5.6524 0.5973 4.9112 47 1 4.2923 2.0854 6.3566 48 1 4.8972 2.9736 4.9339 49 1 3.8549 6.5930 3.8536 50 1 0.9420 1.7502 4.5021 51 1 1.4678 1.6619 6.1912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084405456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:30 Heat of formation + Delta-G solvation = 122.302399 kcal Electronic energy + Delta-G solvation = -33091.141577 eV Core-core repulsion = 29029.890978 eV Total energy + Delta-G solvation = -4061.250599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -42.26724 -41.74185 -40.29728 -37.52616 -37.16289 -34.45096 -33.93277 -32.73870 -31.52579 -30.78109 -29.59875 -28.85103 -28.43656 -25.91743 -25.50379 -25.03769 -23.30017 -22.83216 -21.79925 -21.58405 -20.82438 -19.39086 -18.78130 -18.15684 -17.96230 -17.37830 -17.17436 -16.93894 -16.69260 -16.15834 -15.62012 -15.57215 -15.41718 -15.15496 -15.04417 -14.78800 -14.43773 -14.37939 -14.28059 -14.02986 -13.78576 -13.55002 -13.48669 -13.21362 -13.08097 -12.92324 -12.84301 -12.65228 -12.61699 -12.50489 -12.35056 -12.26510 -12.10986 -11.66152 -11.43277 -11.37206 -11.23748 -10.96941 -10.71979 -10.23059 -9.61487 -9.35708 -9.11593 -8.86551 -8.20270 -5.55717 1.14793 1.25354 1.38222 1.48909 1.49895 1.68030 1.94438 2.15436 2.38109 2.79226 3.02539 3.26340 3.35461 3.41895 3.54557 3.68614 3.86998 3.96037 4.06926 4.10495 4.17709 4.29115 4.33147 4.34259 4.43138 4.47224 4.50166 4.54471 4.56264 4.61069 4.70169 4.81239 4.82399 4.85805 4.88447 4.90685 5.00688 5.03383 5.06001 5.07028 5.18757 5.22187 5.30189 5.52372 5.77679 5.87716 5.87907 5.91937 6.09497 6.28735 6.80628 6.94630 7.01117 7.18098 7.62801 7.96523 9.00888 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.003455 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.844526 B = 8101.594365 C = 8849.179973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.490 5.490 3 C 0.028 3.972 4 C 0.069 3.931 5 H 0.104 0.896 6 C 0.156 3.844 7 N -0.373 5.373 8 C 0.049 3.951 9 C -0.284 4.284 10 C 0.016 3.984 11 N -0.296 5.296 12 C 0.506 3.494 13 O -0.571 6.571 14 N -0.635 5.635 15 C 0.106 3.894 16 C -0.100 4.100 17 H 0.138 0.862 18 C -0.110 4.110 19 C 0.116 3.884 20 N -0.609 5.609 21 C -0.246 4.246 22 H 0.018 0.982 23 C -0.038 4.038 24 N -0.963 5.963 25 Si 0.963 3.037 26 H -0.258 1.258 27 H -0.312 1.312 28 H -0.263 1.263 29 C 0.142 3.858 30 C 0.119 3.881 31 H 0.120 0.880 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.009 0.991 38 H 0.142 0.858 39 H 0.083 0.917 40 H 0.210 0.790 41 H 0.164 0.836 42 H 0.191 0.809 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.045 0.955 48 H 0.047 0.953 49 H 0.262 0.738 50 H 0.033 0.967 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.395 -28.312 -0.861 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.211 5.211 3 C -0.121 4.121 4 C -0.044 4.044 5 H 0.121 0.879 6 C 0.033 3.967 7 N -0.156 5.156 8 C -0.095 4.095 9 C -0.313 4.313 10 C -0.171 4.171 11 N -0.117 5.117 12 C 0.294 3.706 13 O -0.450 6.450 14 N -0.370 5.370 15 C -0.014 4.014 16 C -0.119 4.119 17 H 0.156 0.844 18 C -0.149 4.149 19 C -0.009 4.009 20 N -0.333 5.333 21 C -0.376 4.376 22 H 0.036 0.964 23 C -0.232 4.232 24 N -0.609 5.609 25 Si 0.790 3.210 26 H -0.183 1.183 27 H -0.241 1.241 28 H -0.187 1.187 29 C 0.017 3.983 30 C 0.015 3.985 31 H 0.138 0.862 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.159 0.841 39 H 0.101 0.899 40 H 0.227 0.773 41 H 0.182 0.818 42 H 0.208 0.792 43 H 0.109 0.891 44 H 0.154 0.846 45 H 0.055 0.945 46 H 0.115 0.885 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.052 0.948 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.313 -26.784 -1.291 26.915 hybrid contribution 0.106 1.291 0.679 1.462 sum 2.420 -25.493 -0.612 25.615 Atomic orbital electron populations 1.22518 0.87103 1.01867 1.01170 1.62564 1.08930 1.12641 1.36999 1.22302 0.99755 0.89642 1.00398 1.22111 1.01656 0.94554 0.86114 0.87852 1.21632 1.00770 0.89811 0.84468 1.48543 1.44734 1.17242 1.05093 1.23211 0.96988 0.88749 1.00578 1.21805 1.12998 1.04153 0.92374 1.24404 0.98524 0.93211 1.00967 1.77710 1.23780 1.22699 0.87508 1.21668 0.81106 0.82591 0.85221 1.90655 1.32092 1.36945 1.85340 1.50274 1.35830 1.43526 1.07413 1.23935 0.86816 0.95217 0.95452 1.22883 0.92258 0.95759 1.00998 0.84441 1.21745 0.99586 0.94289 0.99318 1.21422 0.85089 0.97058 0.97292 1.43867 1.03211 1.17288 1.68982 1.18591 1.16088 0.87434 1.15460 0.96369 1.26088 1.01125 0.94823 1.01184 1.70015 1.45143 1.08618 1.37085 0.85730 0.79255 0.75116 0.80903 1.18327 1.24135 1.18722 1.20269 0.90882 0.89443 0.97738 1.22535 0.98673 0.95239 0.82007 0.86236 0.94230 0.92162 0.91014 0.92191 0.91082 0.97193 0.84068 0.89904 0.77328 0.81809 0.79195 0.89149 0.84568 0.94456 0.88483 0.93681 0.93487 0.92961 0.94823 0.95287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 8.76 127.69 1.12 1.80 16 2 N -0.49 -15.78 3.85 -927.73 -3.57 -19.36 16 3 C 0.03 1.05 9.22 127.69 1.18 2.22 16 4 C 0.07 1.85 2.28 44.17 0.10 1.95 16 5 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 6 C 0.16 2.92 5.54 86.38 0.48 3.40 16 7 N -0.37 -7.50 3.66 -348.06 -1.28 -8.78 16 8 C 0.05 0.69 11.45 83.54 0.96 1.65 16 9 C -0.28 -4.44 10.80 21.99 0.24 -4.20 16 10 C 0.02 0.32 12.02 85.23 1.02 1.34 16 11 N -0.30 -7.63 11.26 -57.02 -0.64 -8.27 16 12 C 0.51 16.54 6.37 87.66 0.56 17.10 16 13 O -0.57 -24.91 11.14 -3.02 -0.03 -24.95 16 14 N -0.63 -16.70 3.34 -822.60 -2.75 -19.45 16 15 C 0.11 1.49 7.97 86.34 0.69 2.18 16 16 C -0.10 -1.97 4.39 -10.30 -0.05 -2.02 16 17 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.11 -3.14 5.66 30.63 0.17 -2.97 16 19 C 0.12 4.62 4.17 86.39 0.36 4.98 16 20 N -0.61 -29.50 2.73 -707.47 -1.93 -31.42 16 21 C -0.25 -15.08 9.93 84.03 0.83 -14.25 16 22 H 0.02 1.33 8.04 -2.91 -0.02 1.30 16 23 C -0.04 -2.33 5.20 84.86 0.44 -1.89 16 24 N -0.96 -63.86 13.97 21.65 0.30 -63.56 16 25 Si 0.96 47.40 24.52 68.60 1.68 49.08 16 26 H -0.26 -11.41 6.33 99.48 0.63 -10.79 16 27 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 28 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 29 C 0.14 5.85 6.17 85.81 0.53 6.37 16 30 C 0.12 3.23 4.24 43.77 0.19 3.42 16 31 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.04 1.52 5.38 -2.39 -0.01 1.51 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 2.07 5.83 -2.38 -0.01 2.06 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.01 0.45 6.01 -2.39 -0.01 0.44 16 38 H 0.14 1.41 8.07 -2.39 -0.02 1.39 16 39 H 0.08 1.75 6.08 -2.38 -0.01 1.74 16 40 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.09 1.15 7.97 -2.39 -0.02 1.14 16 44 H 0.14 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.04 1.27 7.69 -2.38 -0.02 1.25 16 46 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.05 1.64 7.51 -2.39 -0.02 1.62 16 48 H 0.05 2.15 4.39 -2.39 -0.01 2.14 16 49 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 50 H 0.03 1.67 6.34 -2.39 -0.02 1.66 16 51 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -89.98 388.28 1.45 -88.52 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.85 Total: 17.06 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 8.82 Total: 21.11 kcal Atomic # 7 Polarization: -140.97 SS G_CDS: -9.86 Total: -150.83 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.03 Total: -24.95 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.68 Total: 49.08 kcal Total: -89.98 1.45 -88.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084405456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.826 kcal (2) G-P(sol) polarization free energy of solvation -89.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds