Wall clock time and date at job start Wed Apr 1 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99651 * 2 1 4 4 H 1.48498 * 109.46971 * 240.00105 * 3 2 1 5 5 H 1.48498 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46682 * 120.00494 * 3 2 1 7 7 C 1.38810 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99619 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.47430 * 126.06434 * 0.02562 * 9 7 2 11 11 C 1.54499 * 107.15286 * 181.60788 * 10 9 7 12 12 C 1.56031 * 102.60872 * 22.84591 * 11 10 9 13 13 H 1.09002 * 113.50781 * 202.62889 * 12 11 10 14 14 C 1.53099 * 106.38909 * 78.38016 * 12 11 10 15 15 C 1.52838 * 110.56757 * 195.41510 * 14 12 11 16 16 N 1.47154 * 107.97991 * 57.35458 * 15 14 12 17 17 C 1.34772 * 121.21777 * 122.73920 * 16 15 14 18 18 O 1.21278 * 120.00123 * 174.50807 * 17 16 15 19 19 C 1.50700 * 119.99817 * 354.50359 * 17 16 15 20 20 H 1.08998 * 109.46846 * 19.95625 * 19 17 16 21 21 C 1.52989 * 109.47514 * 259.95292 * 19 17 16 22 22 C 1.53003 * 117.49980 * 134.35911 * 21 19 17 23 23 C 1.52998 * 60.00261 * 252.51159 * 22 21 19 24 24 N 1.46898 * 109.46730 * 139.95227 * 19 17 16 25 25 C 1.48540 * 111.00065 * 177.60480 * 24 19 17 26 26 C 1.54936 * 103.22848 * 159.72175 * 25 24 19 27 27 C 1.54598 * 102.92163 * 322.58859 * 26 25 24 28 28 C 1.47906 * 111.00477 * 294.99966 * 24 19 17 29 29 C 1.46761 * 117.56926 * 302.71333 * 16 15 14 30 30 C 1.46476 * 126.05910 * 180.02562 * 9 7 2 31 31 H 1.08994 * 108.41560 * 269.25375 * 30 9 7 32 32 H 0.97001 * 120.00230 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.90578 * 300.99392 * 10 9 7 34 34 H 1.09004 * 109.89758 * 62.05078 * 10 9 7 35 35 H 1.09004 * 110.78483 * 141.12747 * 11 10 9 36 36 H 1.09003 * 110.78537 * 264.38084 * 11 10 9 37 37 H 1.09007 * 109.25763 * 75.13780 * 14 12 11 38 38 H 1.08994 * 109.25929 * 315.69645 * 14 12 11 39 39 H 1.09006 * 109.76255 * 176.97491 * 15 14 12 40 40 H 1.09004 * 109.76083 * 297.73234 * 15 14 12 41 41 H 1.08998 * 115.55413 * 280.07266 * 21 19 17 42 42 H 1.09001 * 117.49680 * 0.02562 * 22 21 19 43 43 H 1.08998 * 117.49658 * 145.01888 * 22 21 19 44 44 H 1.08995 * 117.49993 * 252.51035 * 23 22 21 45 45 H 1.08999 * 117.49502 * 107.48730 * 23 22 21 46 46 H 1.08994 * 110.67098 * 278.15924 * 25 24 19 47 47 H 1.08998 * 110.66366 * 41.28797 * 25 24 19 48 48 H 1.09002 * 110.72201 * 204.23346 * 26 25 24 49 49 H 1.08997 * 110.72539 * 80.94722 * 26 25 24 50 50 H 1.09004 * 110.30502 * 263.03834 * 27 26 25 51 51 H 1.08998 * 110.31072 * 140.87737 * 27 26 25 52 52 H 1.09002 * 109.91194 * 333.51483 * 28 24 19 53 53 H 1.08997 * 109.91007 * 94.60327 * 28 24 19 54 54 H 1.08993 * 109.22834 * 172.83270 * 29 16 15 55 55 H 1.09004 * 109.23054 * 292.24006 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1404 -2.5437 -0.0028 11 6 -0.4377 -4.0593 0.0377 12 6 0.8716 -4.6469 0.6502 13 1 1.0293 -5.6988 0.4117 14 6 0.7949 -4.3934 2.1581 15 6 2.1677 -4.5777 2.8041 16 7 3.1082 -3.6599 2.1419 17 6 3.8006 -2.7421 2.8452 18 8 4.6422 -2.0645 2.2945 19 6 3.5289 -2.5578 4.3160 20 1 3.0331 -3.4458 4.7080 21 6 2.6271 -1.3387 4.5192 22 6 1.4433 -1.4874 5.4771 23 6 1.2018 -1.4146 3.9681 24 7 4.7981 -2.3518 5.0263 25 6 4.5652 -2.1089 6.4731 26 6 5.9363 -2.4409 7.1136 27 6 6.4242 -3.6479 6.2798 28 6 5.6491 -3.5593 4.9522 29 6 3.2652 -3.7808 0.6878 30 6 1.9200 -3.7267 -0.0017 31 1 2.0482 -4.0464 -1.0358 32 1 -0.4850 0.8400 0.0004 33 1 -0.5659 -2.0585 0.8756 34 1 -0.5594 -2.1048 -0.9083 35 1 -1.2930 -4.2687 0.6801 36 1 -0.6062 -4.4475 -0.9668 37 1 0.0901 -5.0946 2.6051 38 1 0.4485 -3.3751 2.3342 39 1 2.1095 -4.3422 3.8668 40 1 2.5021 -5.6067 2.6718 41 1 3.1290 -0.3717 4.4852 42 1 1.3073 -2.4537 5.9628 43 1 1.1664 -0.6182 6.0737 44 1 0.7659 -0.4975 3.5719 45 1 0.9066 -2.3330 3.4608 46 1 4.3000 -1.0666 6.6504 47 1 3.7909 -2.7742 6.8550 48 1 5.8157 -2.7189 8.1606 49 1 6.6227 -1.6001 7.0132 50 1 6.1907 -4.5810 6.7927 51 1 7.4963 -3.5734 6.0978 52 1 5.0266 -4.4450 4.8257 53 1 6.3449 -3.4723 4.1177 54 1 3.8879 -2.9633 0.3247 55 1 3.7485 -4.7301 0.4566 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084997945.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:17 Heat of formation + Delta-G solvation = 24.101802 kcal Electronic energy + Delta-G solvation = -34683.932593 eV Core-core repulsion = 30721.964040 eV Total energy + Delta-G solvation = -3961.968553 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.79998 -40.30468 -38.93037 -37.82958 -36.47770 -34.62061 -33.12386 -32.72704 -30.82220 -30.06001 -29.78775 -27.86631 -26.46310 -25.25496 -24.00639 -23.31052 -22.68887 -22.28083 -21.71569 -21.40070 -20.44960 -19.60439 -18.48450 -18.36841 -17.44887 -16.96691 -16.78913 -16.63207 -16.09063 -15.89508 -15.64655 -15.54991 -15.21464 -15.04358 -14.69758 -14.28065 -14.20325 -14.07832 -13.72629 -13.45865 -13.40463 -13.24921 -13.14639 -13.03164 -12.89323 -12.65338 -12.59221 -12.56049 -12.22161 -12.13693 -12.10130 -12.06288 -12.00883 -11.63085 -11.51352 -11.40344 -11.37853 -11.22834 -11.16280 -11.07336 -10.63818 -10.37550 -9.45765 -9.31117 -8.75463 -7.81068 -5.08740 1.32487 1.34868 1.43006 1.70393 2.07263 2.47677 2.78655 3.01866 3.37758 3.46904 3.61542 3.66380 3.75477 3.83774 3.90361 3.94469 3.98879 4.01949 4.11236 4.13992 4.20420 4.30376 4.35856 4.46897 4.48949 4.52208 4.62090 4.62997 4.68531 4.72749 4.74291 4.77762 4.84677 4.90149 4.93809 5.00003 5.01422 5.03608 5.06633 5.11765 5.18775 5.20274 5.20962 5.26125 5.32617 5.37192 5.55765 5.70322 5.73648 5.78097 5.87062 5.94606 5.98377 6.26551 6.62402 7.19439 7.39696 7.87190 8.49796 9.28768 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004955 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.918835 B = 5649.846538 C = 6608.323133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.049 4.049 3 Si 0.939 3.061 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.299 1.299 7 C -0.194 4.194 8 H 0.056 0.944 9 N -0.599 5.599 10 C 0.187 3.813 11 C -0.129 4.129 12 C -0.083 4.083 13 H 0.120 0.880 14 C -0.128 4.128 15 C 0.102 3.898 16 N -0.595 5.595 17 C 0.524 3.476 18 O -0.579 6.579 19 C 0.112 3.888 20 H 0.086 0.914 21 C -0.153 4.153 22 C -0.134 4.134 23 C -0.181 4.181 24 N -0.525 5.525 25 C 0.040 3.960 26 C -0.118 4.118 27 C -0.120 4.120 28 C 0.034 3.966 29 C 0.119 3.881 30 C 0.143 3.857 31 H 0.023 0.977 32 H 0.241 0.759 33 H 0.013 0.987 34 H -0.004 1.004 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.051 0.949 53 H 0.049 0.951 54 H 0.046 0.954 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -16.556 16.389 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.242 4.242 3 Si 0.771 3.229 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.227 1.227 7 C -0.324 4.324 8 H 0.074 0.926 9 N -0.324 5.324 10 C 0.063 3.937 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.138 0.862 14 C -0.166 4.166 15 C -0.019 4.019 16 N -0.328 5.328 17 C 0.312 3.688 18 O -0.458 6.458 19 C 0.001 3.999 20 H 0.104 0.896 21 C -0.172 4.172 22 C -0.170 4.170 23 C -0.218 4.218 24 N -0.251 5.251 25 C -0.087 4.087 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.094 4.094 29 C -0.005 4.005 30 C 0.036 3.964 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.015 0.985 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.142 0.858 43 H 0.124 0.876 44 H 0.076 0.924 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.082 0.918 50 H 0.109 0.891 51 H 0.091 0.909 52 H 0.069 0.931 53 H 0.068 0.932 54 H 0.064 0.936 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.936 -15.519 15.822 22.510 hybrid contribution 0.049 1.583 -0.786 1.769 sum 3.985 -13.936 15.036 20.885 Atomic orbital electron populations 1.70092 1.05052 1.24222 1.59730 1.25033 0.96082 0.98907 1.04190 0.85740 0.77590 0.82264 0.77349 1.21271 1.21373 1.22716 1.18827 0.89591 0.83774 1.40195 0.92629 1.44359 1.02083 1.00005 1.85959 1.20966 0.83416 0.92162 0.97195 1.23019 0.97914 0.94976 1.00838 1.22396 0.93855 0.98890 0.95072 0.86166 1.22001 0.97052 1.02557 0.94964 1.22094 0.88671 0.94034 0.97141 1.47960 1.42558 1.34964 1.07319 1.20683 0.80141 0.78366 0.89568 1.90625 1.35704 1.46981 1.72450 1.21253 0.91020 0.97285 0.90354 0.89637 1.21811 0.89719 0.97658 1.08016 1.23169 0.97861 1.04755 0.91234 1.22988 0.97797 1.03302 0.97712 1.64469 1.12703 1.36019 1.11914 1.23271 0.98176 1.01782 0.85440 1.22488 0.95372 0.97902 0.99834 1.22360 1.00182 0.99614 0.93677 1.22865 0.96342 0.90755 0.99397 1.21197 0.97690 1.01208 0.80358 1.20977 0.92748 0.86388 0.96306 0.95997 0.94939 0.96893 0.98544 0.89853 0.91654 0.87855 0.93060 0.88968 0.88006 0.90412 0.85821 0.87574 0.92361 0.87579 0.90702 0.91777 0.88259 0.91772 0.89104 0.90857 0.93106 0.93194 0.93581 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 10.38 21.65 0.22 -57.26 16 2 C -0.05 -2.94 5.49 84.86 0.47 -2.48 16 3 Si 0.94 51.17 29.55 68.60 2.03 53.20 16 4 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 5 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.30 -16.95 7.11 99.48 0.71 -16.24 16 7 C -0.19 -11.30 9.70 84.03 0.81 -10.49 16 8 H 0.06 3.46 6.51 -2.91 -0.02 3.44 16 9 N -0.60 -29.73 3.20 -674.17 -2.15 -31.88 16 10 C 0.19 8.87 4.62 86.71 0.40 9.27 16 11 C -0.13 -4.21 6.33 32.15 0.20 -4.01 16 12 C -0.08 -2.32 3.68 -9.38 -0.03 -2.35 16 13 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 14 C -0.13 -3.24 4.82 30.57 0.15 -3.09 16 15 C 0.10 2.35 5.74 86.20 0.49 2.84 16 16 N -0.60 -20.12 2.97 -823.10 -2.44 -22.57 16 17 C 0.52 20.60 5.83 87.66 0.51 21.11 16 18 O -0.58 -29.35 16.33 -3.02 -0.05 -29.40 16 19 C 0.11 3.46 1.38 44.17 0.06 3.52 16 20 H 0.09 2.07 5.09 -2.39 -0.01 2.06 16 21 C -0.15 -5.14 4.25 -10.79 -0.05 -5.18 16 22 C -0.13 -3.27 10.09 30.59 0.31 -2.96 16 23 C -0.18 -6.46 10.02 30.60 0.31 -6.16 16 24 N -0.53 -15.27 4.90 -862.26 -4.23 -19.50 16 25 C 0.04 0.84 5.65 86.65 0.49 1.33 16 26 C -0.12 -1.95 7.06 31.80 0.22 -1.73 16 27 C -0.12 -2.03 6.93 31.47 0.22 -1.81 16 28 C 0.03 0.84 6.01 86.44 0.52 1.36 16 29 C 0.12 4.43 5.67 85.76 0.49 4.92 16 30 C 0.14 5.47 2.96 44.76 0.13 5.60 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.01 0.69 7.04 -2.39 -0.02 0.67 16 34 H 0.00 -0.20 7.56 -2.39 -0.02 -0.22 16 35 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16 38 H 0.05 1.75 4.18 -2.39 -0.01 1.74 16 39 H 0.09 1.82 5.22 -2.38 -0.01 1.80 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.12 2.18 8.09 -2.39 -0.02 2.16 16 43 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.11 3.79 4.31 -2.39 -0.01 3.78 16 46 H 0.07 1.69 7.95 -2.39 -0.02 1.67 16 47 H 0.06 1.08 8.02 -2.39 -0.02 1.06 16 48 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.05 1.10 7.65 -2.39 -0.02 1.08 16 53 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 54 H 0.05 2.17 5.57 -2.39 -0.01 2.15 16 55 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -80.26 402.31 -0.05 -80.31 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.87 Total: 17.40 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.70 Total: 9.70 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -8.60 Total: -131.21 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -80.26 -0.05 -80.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084997945.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.413 kcal (2) G-P(sol) polarization free energy of solvation -80.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds