Wall clock time and date at job start Wed Apr 1 2020 06:22:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86804 * 119.99651 * 2 1
4 4 H 1.48498 * 109.46971 * 240.00105 * 3 2 1
5 5 H 1.48498 * 109.47005 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.46682 * 120.00494 * 3 2 1
7 7 C 1.38810 * 119.99943 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99619 * 179.97438 * 7 2 1
9 9 N 1.36930 * 120.00089 * 0.02562 * 7 2 1
10 10 C 1.47430 * 126.06434 * 0.02562 * 9 7 2
11 11 C 1.54499 * 107.15286 * 181.60788 * 10 9 7
12 12 C 1.56031 * 102.60872 * 22.84591 * 11 10 9
13 13 H 1.09002 * 113.50781 * 202.62889 * 12 11 10
14 14 C 1.53099 * 106.38909 * 78.38016 * 12 11 10
15 15 C 1.52838 * 110.56757 * 195.41510 * 14 12 11
16 16 N 1.47154 * 107.97991 * 57.35458 * 15 14 12
17 17 C 1.34772 * 121.21777 * 122.73920 * 16 15 14
18 18 O 1.21278 * 120.00123 * 174.50807 * 17 16 15
19 19 C 1.50700 * 119.99817 * 354.50359 * 17 16 15
20 20 H 1.08998 * 109.46846 * 19.95625 * 19 17 16
21 21 C 1.52989 * 109.47514 * 259.95292 * 19 17 16
22 22 C 1.53003 * 117.49980 * 134.35911 * 21 19 17
23 23 C 1.52998 * 60.00261 * 252.51159 * 22 21 19
24 24 N 1.46898 * 109.46730 * 139.95227 * 19 17 16
25 25 C 1.48540 * 111.00065 * 177.60480 * 24 19 17
26 26 C 1.54936 * 103.22848 * 159.72175 * 25 24 19
27 27 C 1.54598 * 102.92163 * 322.58859 * 26 25 24
28 28 C 1.47906 * 111.00477 * 294.99966 * 24 19 17
29 29 C 1.46761 * 117.56926 * 302.71333 * 16 15 14
30 30 C 1.46476 * 126.05910 * 180.02562 * 9 7 2
31 31 H 1.08994 * 108.41560 * 269.25375 * 30 9 7
32 32 H 0.97001 * 120.00230 * 359.97438 * 1 2 3
33 33 H 1.09002 * 109.90578 * 300.99392 * 10 9 7
34 34 H 1.09004 * 109.89758 * 62.05078 * 10 9 7
35 35 H 1.09004 * 110.78483 * 141.12747 * 11 10 9
36 36 H 1.09003 * 110.78537 * 264.38084 * 11 10 9
37 37 H 1.09007 * 109.25763 * 75.13780 * 14 12 11
38 38 H 1.08994 * 109.25929 * 315.69645 * 14 12 11
39 39 H 1.09006 * 109.76255 * 176.97491 * 15 14 12
40 40 H 1.09004 * 109.76083 * 297.73234 * 15 14 12
41 41 H 1.08998 * 115.55413 * 280.07266 * 21 19 17
42 42 H 1.09001 * 117.49680 * 0.02562 * 22 21 19
43 43 H 1.08998 * 117.49658 * 145.01888 * 22 21 19
44 44 H 1.08995 * 117.49993 * 252.51035 * 23 22 21
45 45 H 1.08999 * 117.49502 * 107.48730 * 23 22 21
46 46 H 1.08994 * 110.67098 * 278.15924 * 25 24 19
47 47 H 1.08998 * 110.66366 * 41.28797 * 25 24 19
48 48 H 1.09002 * 110.72201 * 204.23346 * 26 25 24
49 49 H 1.08997 * 110.72539 * 80.94722 * 26 25 24
50 50 H 1.09004 * 110.30502 * 263.03834 * 27 26 25
51 51 H 1.08998 * 110.31072 * 140.87737 * 27 26 25
52 52 H 1.09002 * 109.91194 * 333.51483 * 28 24 19
53 53 H 1.08997 * 109.91007 * 94.60327 * 28 24 19
54 54 H 1.08993 * 109.22834 * 172.83270 * 29 16 15
55 55 H 1.09004 * 109.23054 * 292.24006 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1038 1.6965 -1.2125
5 1 1.2851 2.7465 0.0006
6 1 3.1040 1.6964 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3256 -2.3880 -0.0016
10 6 -0.1404 -2.5437 -0.0028
11 6 -0.4377 -4.0593 0.0377
12 6 0.8716 -4.6469 0.6502
13 1 1.0293 -5.6988 0.4117
14 6 0.7949 -4.3934 2.1581
15 6 2.1677 -4.5777 2.8041
16 7 3.1082 -3.6599 2.1419
17 6 3.8006 -2.7421 2.8452
18 8 4.6422 -2.0645 2.2945
19 6 3.5289 -2.5578 4.3160
20 1 3.0331 -3.4458 4.7080
21 6 2.6271 -1.3387 4.5192
22 6 1.4433 -1.4874 5.4771
23 6 1.2018 -1.4146 3.9681
24 7 4.7981 -2.3518 5.0263
25 6 4.5652 -2.1089 6.4731
26 6 5.9363 -2.4409 7.1136
27 6 6.4242 -3.6479 6.2798
28 6 5.6491 -3.5593 4.9522
29 6 3.2652 -3.7808 0.6878
30 6 1.9200 -3.7267 -0.0017
31 1 2.0482 -4.0464 -1.0358
32 1 -0.4850 0.8400 0.0004
33 1 -0.5659 -2.0585 0.8756
34 1 -0.5594 -2.1048 -0.9083
35 1 -1.2930 -4.2687 0.6801
36 1 -0.6062 -4.4475 -0.9668
37 1 0.0901 -5.0946 2.6051
38 1 0.4485 -3.3751 2.3342
39 1 2.1095 -4.3422 3.8668
40 1 2.5021 -5.6067 2.6718
41 1 3.1290 -0.3717 4.4852
42 1 1.3073 -2.4537 5.9628
43 1 1.1664 -0.6182 6.0737
44 1 0.7659 -0.4975 3.5719
45 1 0.9066 -2.3330 3.4608
46 1 4.3000 -1.0666 6.6504
47 1 3.7909 -2.7742 6.8550
48 1 5.8157 -2.7189 8.1606
49 1 6.6227 -1.6001 7.0132
50 1 6.1907 -4.5810 6.7927
51 1 7.4963 -3.5734 6.0978
52 1 5.0266 -4.4450 4.8257
53 1 6.3449 -3.4723 4.1177
54 1 3.8879 -2.9633 0.3247
55 1 3.7485 -4.7301 0.4566
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001084997945.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:22:17
Heat of formation + Delta-G solvation = 24.101802 kcal
Electronic energy + Delta-G solvation = -34683.932593 eV
Core-core repulsion = 30721.964040 eV
Total energy + Delta-G solvation = -3961.968553 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.231 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-41.79998 -40.30468 -38.93037 -37.82958 -36.47770 -34.62061 -33.12386 -32.72704
-30.82220 -30.06001 -29.78775 -27.86631 -26.46310 -25.25496 -24.00639 -23.31052
-22.68887 -22.28083 -21.71569 -21.40070 -20.44960 -19.60439 -18.48450 -18.36841
-17.44887 -16.96691 -16.78913 -16.63207 -16.09063 -15.89508 -15.64655 -15.54991
-15.21464 -15.04358 -14.69758 -14.28065 -14.20325 -14.07832 -13.72629 -13.45865
-13.40463 -13.24921 -13.14639 -13.03164 -12.89323 -12.65338 -12.59221 -12.56049
-12.22161 -12.13693 -12.10130 -12.06288 -12.00883 -11.63085 -11.51352 -11.40344
-11.37853 -11.22834 -11.16280 -11.07336 -10.63818 -10.37550 -9.45765 -9.31117
-8.75463 -7.81068 -5.08740 1.32487 1.34868 1.43006 1.70393 2.07263
2.47677 2.78655 3.01866 3.37758 3.46904 3.61542 3.66380 3.75477
3.83774 3.90361 3.94469 3.98879 4.01949 4.11236 4.13992 4.20420
4.30376 4.35856 4.46897 4.48949 4.52208 4.62090 4.62997 4.68531
4.72749 4.74291 4.77762 4.84677 4.90149 4.93809 5.00003 5.01422
5.03608 5.06633 5.11765 5.18775 5.20274 5.20962 5.26125 5.32617
5.37192 5.55765 5.70322 5.73648 5.78097 5.87062 5.94606 5.98377
6.26551 6.62402 7.19439 7.39696 7.87190 8.49796 9.28768
Molecular weight = 347.23amu
Principal moments of inertia in cm(-1)
A = 0.011184 B = 0.004955 C = 0.004236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2502.918835 B = 5649.846538 C = 6608.323133
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.940 5.940
2 C -0.049 4.049
3 Si 0.939 3.061
4 H -0.286 1.286
5 H -0.288 1.288
6 H -0.299 1.299
7 C -0.194 4.194
8 H 0.056 0.944
9 N -0.599 5.599
10 C 0.187 3.813
11 C -0.129 4.129
12 C -0.083 4.083
13 H 0.120 0.880
14 C -0.128 4.128
15 C 0.102 3.898
16 N -0.595 5.595
17 C 0.524 3.476
18 O -0.579 6.579
19 C 0.112 3.888
20 H 0.086 0.914
21 C -0.153 4.153
22 C -0.134 4.134
23 C -0.181 4.181
24 N -0.525 5.525
25 C 0.040 3.960
26 C -0.118 4.118
27 C -0.120 4.120
28 C 0.034 3.966
29 C 0.119 3.881
30 C 0.143 3.857
31 H 0.023 0.977
32 H 0.241 0.759
33 H 0.013 0.987
34 H -0.004 1.004
35 H 0.083 0.917
36 H 0.065 0.935
37 H 0.103 0.897
38 H 0.051 0.949
39 H 0.092 0.908
40 H 0.102 0.898
41 H 0.078 0.922
42 H 0.124 0.876
43 H 0.106 0.894
44 H 0.058 0.942
45 H 0.106 0.894
46 H 0.075 0.925
47 H 0.064 0.936
48 H 0.099 0.901
49 H 0.063 0.937
50 H 0.090 0.910
51 H 0.073 0.927
52 H 0.051 0.949
53 H 0.049 0.951
54 H 0.046 0.954
55 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.275 -16.556 16.389 23.525
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.242 4.242
3 Si 0.771 3.229
4 H -0.213 1.213
5 H -0.214 1.214
6 H -0.227 1.227
7 C -0.324 4.324
8 H 0.074 0.926
9 N -0.324 5.324
10 C 0.063 3.937
11 C -0.167 4.167
12 C -0.102 4.102
13 H 0.138 0.862
14 C -0.166 4.166
15 C -0.019 4.019
16 N -0.328 5.328
17 C 0.312 3.688
18 O -0.458 6.458
19 C 0.001 3.999
20 H 0.104 0.896
21 C -0.172 4.172
22 C -0.170 4.170
23 C -0.218 4.218
24 N -0.251 5.251
25 C -0.087 4.087
26 C -0.156 4.156
27 C -0.158 4.158
28 C -0.094 4.094
29 C -0.005 4.005
30 C 0.036 3.964
31 H 0.040 0.960
32 H 0.051 0.949
33 H 0.031 0.969
34 H 0.015 0.985
35 H 0.101 0.899
36 H 0.083 0.917
37 H 0.121 0.879
38 H 0.069 0.931
39 H 0.110 0.890
40 H 0.120 0.880
41 H 0.096 0.904
42 H 0.142 0.858
43 H 0.124 0.876
44 H 0.076 0.924
45 H 0.124 0.876
46 H 0.093 0.907
47 H 0.082 0.918
48 H 0.117 0.883
49 H 0.082 0.918
50 H 0.109 0.891
51 H 0.091 0.909
52 H 0.069 0.931
53 H 0.068 0.932
54 H 0.064 0.936
55 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 3.936 -15.519 15.822 22.510
hybrid contribution 0.049 1.583 -0.786 1.769
sum 3.985 -13.936 15.036 20.885
Atomic orbital electron populations
1.70092 1.05052 1.24222 1.59730 1.25033 0.96082 0.98907 1.04190
0.85740 0.77590 0.82264 0.77349 1.21271 1.21373 1.22716 1.18827
0.89591 0.83774 1.40195 0.92629 1.44359 1.02083 1.00005 1.85959
1.20966 0.83416 0.92162 0.97195 1.23019 0.97914 0.94976 1.00838
1.22396 0.93855 0.98890 0.95072 0.86166 1.22001 0.97052 1.02557
0.94964 1.22094 0.88671 0.94034 0.97141 1.47960 1.42558 1.34964
1.07319 1.20683 0.80141 0.78366 0.89568 1.90625 1.35704 1.46981
1.72450 1.21253 0.91020 0.97285 0.90354 0.89637 1.21811 0.89719
0.97658 1.08016 1.23169 0.97861 1.04755 0.91234 1.22988 0.97797
1.03302 0.97712 1.64469 1.12703 1.36019 1.11914 1.23271 0.98176
1.01782 0.85440 1.22488 0.95372 0.97902 0.99834 1.22360 1.00182
0.99614 0.93677 1.22865 0.96342 0.90755 0.99397 1.21197 0.97690
1.01208 0.80358 1.20977 0.92748 0.86388 0.96306 0.95997 0.94939
0.96893 0.98544 0.89853 0.91654 0.87855 0.93060 0.88968 0.88006
0.90412 0.85821 0.87574 0.92361 0.87579 0.90702 0.91777 0.88259
0.91772 0.89104 0.90857 0.93106 0.93194 0.93581 0.89396
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.48 10.38 21.65 0.22 -57.26 16
2 C -0.05 -2.94 5.49 84.86 0.47 -2.48 16
3 Si 0.94 51.17 29.55 68.60 2.03 53.20 16
4 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16
5 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16
6 H -0.30 -16.95 7.11 99.48 0.71 -16.24 16
7 C -0.19 -11.30 9.70 84.03 0.81 -10.49 16
8 H 0.06 3.46 6.51 -2.91 -0.02 3.44 16
9 N -0.60 -29.73 3.20 -674.17 -2.15 -31.88 16
10 C 0.19 8.87 4.62 86.71 0.40 9.27 16
11 C -0.13 -4.21 6.33 32.15 0.20 -4.01 16
12 C -0.08 -2.32 3.68 -9.38 -0.03 -2.35 16
13 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16
14 C -0.13 -3.24 4.82 30.57 0.15 -3.09 16
15 C 0.10 2.35 5.74 86.20 0.49 2.84 16
16 N -0.60 -20.12 2.97 -823.10 -2.44 -22.57 16
17 C 0.52 20.60 5.83 87.66 0.51 21.11 16
18 O -0.58 -29.35 16.33 -3.02 -0.05 -29.40 16
19 C 0.11 3.46 1.38 44.17 0.06 3.52 16
20 H 0.09 2.07 5.09 -2.39 -0.01 2.06 16
21 C -0.15 -5.14 4.25 -10.79 -0.05 -5.18 16
22 C -0.13 -3.27 10.09 30.59 0.31 -2.96 16
23 C -0.18 -6.46 10.02 30.60 0.31 -6.16 16
24 N -0.53 -15.27 4.90 -862.26 -4.23 -19.50 16
25 C 0.04 0.84 5.65 86.65 0.49 1.33 16
26 C -0.12 -1.95 7.06 31.80 0.22 -1.73 16
27 C -0.12 -2.03 6.93 31.47 0.22 -1.81 16
28 C 0.03 0.84 6.01 86.44 0.52 1.36 16
29 C 0.12 4.43 5.67 85.76 0.49 4.92 16
30 C 0.14 5.47 2.96 44.76 0.13 5.60 16
31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16
32 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16
33 H 0.01 0.69 7.04 -2.39 -0.02 0.67 16
34 H 0.00 -0.20 7.56 -2.39 -0.02 -0.22 16
35 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16
36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
37 H 0.10 1.82 8.14 -2.38 -0.02 1.81 16
38 H 0.05 1.75 4.18 -2.39 -0.01 1.74 16
39 H 0.09 1.82 5.22 -2.38 -0.01 1.80 16
40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16
41 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16
42 H 0.12 2.18 8.09 -2.39 -0.02 2.16 16
43 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16
44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16
45 H 0.11 3.79 4.31 -2.39 -0.01 3.78 16
46 H 0.07 1.69 7.95 -2.39 -0.02 1.67 16
47 H 0.06 1.08 8.02 -2.39 -0.02 1.06 16
48 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
50 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16
51 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
52 H 0.05 1.10 7.65 -2.39 -0.02 1.08 16
53 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
54 H 0.05 2.17 5.57 -2.39 -0.01 2.15 16
55 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16
Total: -1.00 -80.26 402.31 -0.05 -80.31
By element:
Atomic # 1 Polarization: 16.53 SS G_CDS: 0.87 Total: 17.40 kcal
Atomic # 6 Polarization: 4.00 SS G_CDS: 5.70 Total: 9.70 kcal
Atomic # 7 Polarization: -122.61 SS G_CDS: -8.60 Total: -131.21 kcal
Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.40 kcal
Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal
Total: -80.26 -0.05 -80.31 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001084997945.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.413 kcal
(2) G-P(sol) polarization free energy of solvation -80.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.102 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds