Wall clock time and date at job start Wed Apr 1 2020 04:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00017 * 2 1 4 4 C 1.38507 * 119.99736 * 180.02562 * 2 1 3 5 5 C 1.39599 * 120.04705 * 4.99946 * 4 2 1 6 6 C 1.38295 * 118.02526 * 180.02562 * 5 4 2 7 7 C 1.40072 * 117.99340 * 359.97438 * 6 5 4 8 8 C 1.47851 * 120.09273 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00405 * 6.25298 * 8 7 6 10 10 N 1.34777 * 120.00045 * 186.24418 * 8 7 6 11 11 C 1.46962 * 120.35072 * 5.37551 * 10 8 7 12 12 C 1.52334 * 109.08877 * 68.37950 * 11 10 8 13 13 C 1.53804 * 109.16595 * 72.69942 * 12 11 10 14 14 C 1.52447 * 109.42240 * 282.12968 * 13 12 11 15 15 C 1.53965 * 110.73356 * 113.72475 * 14 13 12 16 16 C 1.52879 * 109.71732 * 315.65356 * 15 14 13 17 17 H 1.08998 * 109.48018 * 47.08741 * 16 15 14 18 18 N 1.46504 * 109.48104 * 167.11222 * 16 15 14 19 19 C 1.36938 * 119.99745 * 205.00051 * 18 16 15 20 20 H 1.08004 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99701 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47010 * 89.99884 * 23 21 19 25 25 H 1.48492 * 109.47242 * 209.99752 * 23 21 19 26 26 H 1.48495 * 109.47045 * 330.00154 * 23 21 19 27 27 C 1.45339 * 120.35820 * 185.09649 * 10 8 7 28 28 N 1.32757 * 119.80637 * 0.02562 * 7 6 5 29 29 N 1.28351 * 122.10700 * 359.97438 * 28 7 6 30 30 H 1.08996 * 109.47222 * 270.00418 * 1 2 3 31 31 H 1.09007 * 109.47013 * 30.00076 * 1 2 3 32 32 H 1.09002 * 109.47600 * 149.99620 * 1 2 3 33 33 H 1.09003 * 109.47263 * 239.99780 * 3 2 1 34 34 H 1.08996 * 109.47203 * 359.97438 * 3 2 1 35 35 H 1.08993 * 109.47147 * 120.00372 * 3 2 1 36 36 H 1.07999 * 120.98956 * 0.04467 * 5 4 2 37 37 H 1.07993 * 121.00205 * 179.72698 * 6 5 4 38 38 H 1.08999 * 109.53439 * 188.25571 * 11 10 8 39 39 H 1.08997 * 109.53935 * 308.49275 * 11 10 8 40 40 H 1.09001 * 109.52722 * 192.60818 * 12 11 10 41 41 H 1.08999 * 109.52254 * 312.79652 * 12 11 10 42 42 H 1.08995 * 109.47867 * 42.11526 * 13 12 11 43 43 H 1.08999 * 109.47864 * 162.13644 * 13 12 11 44 44 H 1.08994 * 109.22522 * 234.05415 * 14 13 12 45 45 H 1.09006 * 109.22217 * 353.40540 * 14 13 12 46 46 H 1.09001 * 109.42534 * 75.72262 * 15 14 13 47 47 H 1.08998 * 109.43136 * 195.57018 * 15 14 13 48 48 H 0.96993 * 120.00127 * 24.99201 * 18 16 15 49 49 H 0.96999 * 120.00155 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.67525 * 343.08010 * 27 10 8 51 51 H 1.09003 * 109.67589 * 103.61522 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4644 -2.4067 -0.1064 6 6 2.1974 -3.5794 -0.1021 7 6 3.5905 -3.4835 0.0076 8 6 4.4194 -4.7078 0.0175 9 8 3.9059 -5.7911 -0.1834 10 7 5.7444 -4.6227 0.2490 11 6 6.3542 -3.3348 0.6087 12 6 5.8760 -2.9274 1.9965 13 6 6.5565 -3.8206 3.0474 14 6 5.8685 -5.1806 3.0790 15 6 6.8218 -6.2853 2.5877 16 6 7.5568 -5.8121 1.3335 17 1 7.9415 -4.8052 1.4958 18 7 8.6702 -6.7204 1.0478 19 6 9.7523 -6.2746 0.3367 20 1 9.7846 -5.2535 -0.0139 21 6 10.8074 -7.1350 0.0664 22 7 10.7682 -8.3791 0.4940 23 14 12.2832 -6.5272 -0.9043 24 1 13.2974 -5.9762 0.0301 25 1 12.8739 -7.6566 -1.6661 26 1 11.8514 -5.4654 -1.8484 27 6 6.5845 -5.8047 0.1517 28 7 4.1643 -2.2902 0.1038 29 7 3.4822 -1.2029 0.0997 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 2.8242 1.3264 -0.8900 34 1 1.4892 2.0972 -0.0005 35 1 2.8241 1.3264 0.8899 36 1 0.3877 -2.4243 -0.1895 37 1 1.7101 -4.5402 -0.1770 38 1 7.4397 -3.4338 0.6118 39 1 6.0583 -2.5763 -0.1160 40 1 6.1368 -1.8852 2.1803 41 1 4.7947 -3.0499 2.0596 42 1 7.6072 -3.9508 2.7884 43 1 6.4794 -3.3513 4.0282 44 1 5.5582 -5.4022 4.1001 45 1 4.9891 -5.1530 2.4354 46 1 7.5471 -6.5122 3.3691 47 1 6.2480 -7.1824 2.3550 48 1 8.6410 -7.6374 1.3624 49 1 11.5054 -8.9805 0.3048 50 1 5.9634 -6.6999 0.1824 51 1 7.1467 -5.7794 -0.7818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088415175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:36 Heat of formation + Delta-G solvation = 78.639190 kcal Electronic energy + Delta-G solvation = -32096.503814 eV Core-core repulsion = 28033.359836 eV Total energy + Delta-G solvation = -4063.143978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.44358 -39.89152 -37.66014 -37.30277 -34.81081 -33.77063 -33.24957 -32.37058 -31.50644 -29.81010 -28.91134 -27.46329 -26.41629 -25.70187 -24.69963 -23.82958 -22.72424 -22.20681 -21.34898 -20.13464 -18.75595 -17.89882 -17.80658 -17.17377 -16.86796 -16.08110 -16.04891 -15.49741 -15.07329 -14.82232 -14.73145 -14.54062 -14.17727 -13.93751 -13.71065 -13.63210 -13.50242 -13.10734 -13.03168 -12.90498 -12.75822 -12.44158 -12.35060 -12.30373 -11.70817 -11.38831 -11.30787 -11.15496 -10.90491 -10.80168 -10.65581 -10.46014 -10.41450 -10.32151 -10.16301 -10.09713 -9.76517 -9.71882 -9.64240 -9.52120 -8.89766 -8.27880 -8.04468 -6.94126 -5.74755 -3.04028 0.56625 0.68029 2.32970 2.80719 3.24687 3.45885 3.51201 3.52601 3.67955 3.98530 4.20244 4.36007 4.43275 4.59009 4.61539 4.77836 4.82360 4.86094 5.07251 5.09093 5.19693 5.24855 5.27665 5.35363 5.42996 5.51164 5.57973 5.58722 5.68195 5.73640 5.77915 5.88456 6.00957 6.05653 6.10399 6.23012 6.30339 6.36544 6.43533 6.47063 6.48499 6.59249 6.67747 6.69677 6.76063 6.89339 6.91980 7.18210 7.71601 7.74113 8.34375 8.43676 8.57886 9.54763 10.11782 10.46663 11.47579 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002663 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.643374 B =10510.530152 C =10809.746671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.604 5.604 3 C 0.099 3.901 4 C 0.349 3.651 5 C -0.192 4.192 6 C -0.025 4.025 7 C -0.027 4.027 8 C 0.572 3.428 9 O -0.545 6.545 10 N -0.574 5.574 11 C 0.102 3.898 12 C -0.119 4.119 13 C -0.131 4.131 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.158 3.842 17 H 0.068 0.932 18 N -0.719 5.719 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.086 3.914 28 N -0.151 5.151 29 N -0.306 5.306 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.081 0.919 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.081 19.018 1.663 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.318 5.318 3 C -0.043 4.043 4 C 0.110 3.890 5 C -0.225 4.225 6 C -0.054 4.054 7 C -0.177 4.177 8 C 0.357 3.643 9 O -0.422 6.422 10 N -0.304 5.304 11 C -0.021 4.021 12 C -0.157 4.157 13 C -0.168 4.168 14 C -0.151 4.151 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.086 0.914 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.038 4.038 28 N 0.002 4.998 29 N -0.160 5.160 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.906 19.553 1.595 29.406 hybrid contribution -0.606 -0.820 -0.600 1.183 sum -22.511 18.733 0.995 29.303 Atomic orbital electron populations 1.21853 0.78018 1.03472 1.02045 1.46081 1.05394 1.03059 1.77233 1.21655 0.96639 0.83174 1.02847 1.20128 0.91559 0.86838 0.90506 1.21786 1.01943 0.91148 1.07660 1.22156 0.93010 0.99946 0.90286 1.22604 0.93504 0.94767 1.06862 1.17434 0.82215 0.86628 0.78019 1.90770 1.72303 1.27758 1.51406 1.47764 1.06320 1.11002 1.65340 1.22028 0.98676 0.84485 0.96893 1.21993 0.99810 0.99233 0.94665 1.21911 1.01237 0.95340 0.98304 1.21636 0.98744 0.94783 0.99915 1.22015 0.98043 0.97654 0.98383 1.20841 0.87839 0.95846 0.90733 0.91439 1.42420 1.16575 1.11527 1.65459 1.19223 0.95352 0.95923 1.26651 0.91125 1.24745 0.98776 0.95844 1.01414 1.69662 1.32757 1.04689 1.50744 0.86215 0.83071 0.77442 0.79618 1.21732 1.21834 1.20708 1.22619 0.92780 0.86680 1.01752 1.73531 1.28413 0.94429 1.03420 1.73243 1.03407 1.20332 1.19024 0.92417 0.90463 0.90875 0.91970 0.90835 0.91686 0.83214 0.82370 0.89482 0.88369 0.91141 0.92589 0.90249 0.92854 0.93230 0.92505 0.91774 0.92454 0.78130 0.93495 0.90051 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 10.26 59.85 0.61 0.94 16 2 N -0.60 -4.35 3.38 -189.55 -0.64 -4.99 16 3 C 0.10 0.59 10.19 59.85 0.61 1.20 16 4 C 0.35 3.53 7.44 -154.94 -1.15 2.38 16 5 C -0.19 -1.72 9.33 -39.05 -0.36 -2.08 16 6 C -0.03 -0.28 9.71 -38.87 -0.38 -0.66 16 7 C -0.03 -0.38 5.78 -82.85 -0.48 -0.86 16 8 C 0.57 9.65 6.13 -12.33 -0.08 9.58 16 9 O -0.54 -10.55 15.83 5.32 0.08 -10.47 16 10 N -0.57 -9.64 1.69 -175.72 -0.30 -9.93 16 11 C 0.10 1.51 4.88 -4.13 -0.02 1.49 16 12 C -0.12 -1.60 4.59 -26.65 -0.12 -1.72 16 13 C -0.13 -1.84 5.49 -26.60 -0.15 -1.99 16 14 C -0.11 -1.73 5.40 -26.51 -0.14 -1.87 16 15 C -0.12 -2.19 5.21 -26.29 -0.14 -2.32 16 16 C 0.16 3.14 2.29 -67.97 -0.16 2.99 16 17 H 0.07 1.33 3.29 -51.93 -0.17 1.16 16 18 N -0.72 -17.89 5.13 -53.46 -0.27 -18.16 16 19 C -0.24 -6.55 9.88 -15.06 -0.15 -6.70 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.09 1.68 5.60 -4.64 -0.03 1.66 16 28 N -0.15 -2.07 5.80 33.32 0.19 -1.88 16 29 N -0.31 -3.84 10.75 31.21 0.34 -3.50 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.15 7.92 -51.92 -0.41 -0.26 16 32 H 0.07 0.21 6.01 -51.93 -0.31 -0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.24 7.79 -51.93 -0.40 -0.17 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.15 0.82 6.11 -52.49 -0.32 0.49 16 37 H 0.16 1.61 7.72 -52.49 -0.41 1.21 16 38 H 0.09 1.35 6.07 -51.93 -0.32 1.03 16 39 H 0.10 1.43 5.89 -51.93 -0.31 1.12 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.80 5.36 -51.93 -0.28 0.52 16 42 H 0.08 1.23 5.47 -51.93 -0.28 0.95 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.93 5.38 -51.93 -0.28 0.65 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 48 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.08 1.69 6.73 -51.93 -0.35 1.34 16 51 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -33.02 384.79 -8.81 -41.83 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.49 Total: 9.73 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.22 Total: 1.59 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: 0.04 Total: -65.82 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.02 -8.81 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.471 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds