Wall clock time and date at job start Wed Apr 1 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00017 * 2 1 4 4 C 1.38507 * 119.99736 * 180.02562 * 2 1 3 5 5 C 1.39599 * 120.04705 * 4.99946 * 4 2 1 6 6 C 1.38295 * 118.02526 * 180.02562 * 5 4 2 7 7 C 1.40072 * 117.99340 * 359.97438 * 6 5 4 8 8 C 1.47851 * 120.09273 * 179.97438 * 7 6 5 9 9 O 1.21554 * 120.00405 * 6.25298 * 8 7 6 10 10 N 1.34777 * 120.00045 * 186.24418 * 8 7 6 11 11 C 1.46962 * 120.35072 * 5.37551 * 10 8 7 12 12 C 1.52334 * 109.08877 * 68.37950 * 11 10 8 13 13 C 1.53804 * 109.16595 * 72.69942 * 12 11 10 14 14 C 1.52447 * 109.42240 * 282.12968 * 13 12 11 15 15 C 1.53965 * 110.73356 * 113.72475 * 14 13 12 16 16 C 1.52879 * 109.71732 * 315.65356 * 15 14 13 17 17 H 1.08998 * 109.48018 * 47.08741 * 16 15 14 18 18 N 1.46504 * 109.48104 * 167.11222 * 16 15 14 19 19 C 1.36938 * 119.99745 * 205.00051 * 18 16 15 20 20 H 1.08004 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99701 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47010 * 89.99884 * 23 21 19 25 25 H 1.48492 * 109.47242 * 209.99752 * 23 21 19 26 26 H 1.48495 * 109.47045 * 330.00154 * 23 21 19 27 27 C 1.45339 * 120.35820 * 185.09649 * 10 8 7 28 28 N 1.32757 * 119.80637 * 0.02562 * 7 6 5 29 29 N 1.28351 * 122.10700 * 359.97438 * 28 7 6 30 30 H 1.08996 * 109.47222 * 270.00418 * 1 2 3 31 31 H 1.09007 * 109.47013 * 30.00076 * 1 2 3 32 32 H 1.09002 * 109.47600 * 149.99620 * 1 2 3 33 33 H 1.09003 * 109.47263 * 239.99780 * 3 2 1 34 34 H 1.08996 * 109.47203 * 359.97438 * 3 2 1 35 35 H 1.08993 * 109.47147 * 120.00372 * 3 2 1 36 36 H 1.07999 * 120.98956 * 0.04467 * 5 4 2 37 37 H 1.07993 * 121.00205 * 179.72698 * 6 5 4 38 38 H 1.08999 * 109.53439 * 188.25571 * 11 10 8 39 39 H 1.08997 * 109.53935 * 308.49275 * 11 10 8 40 40 H 1.09001 * 109.52722 * 192.60818 * 12 11 10 41 41 H 1.08999 * 109.52254 * 312.79652 * 12 11 10 42 42 H 1.08995 * 109.47867 * 42.11526 * 13 12 11 43 43 H 1.08999 * 109.47864 * 162.13644 * 13 12 11 44 44 H 1.08994 * 109.22522 * 234.05415 * 14 13 12 45 45 H 1.09006 * 109.22217 * 353.40540 * 14 13 12 46 46 H 1.09001 * 109.42534 * 75.72262 * 15 14 13 47 47 H 1.08998 * 109.43136 * 195.57018 * 15 14 13 48 48 H 0.96993 * 120.00127 * 24.99201 * 18 16 15 49 49 H 0.96999 * 120.00155 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.67525 * 343.08010 * 27 10 8 51 51 H 1.09003 * 109.67589 * 103.61522 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1575 -1.1995 -0.0005 5 6 1.4644 -2.4067 -0.1064 6 6 2.1974 -3.5794 -0.1021 7 6 3.5905 -3.4835 0.0076 8 6 4.4194 -4.7078 0.0175 9 8 3.9059 -5.7911 -0.1834 10 7 5.7444 -4.6227 0.2490 11 6 6.3542 -3.3348 0.6087 12 6 5.8760 -2.9274 1.9965 13 6 6.5565 -3.8206 3.0474 14 6 5.8685 -5.1806 3.0790 15 6 6.8218 -6.2853 2.5877 16 6 7.5568 -5.8121 1.3335 17 1 7.9415 -4.8052 1.4958 18 7 8.6702 -6.7204 1.0478 19 6 9.7523 -6.2746 0.3367 20 1 9.7846 -5.2535 -0.0139 21 6 10.8074 -7.1350 0.0664 22 7 10.7682 -8.3791 0.4940 23 14 12.2832 -6.5272 -0.9043 24 1 13.2974 -5.9762 0.0301 25 1 12.8739 -7.6566 -1.6661 26 1 11.8514 -5.4654 -1.8484 27 6 6.5845 -5.8047 0.1517 28 7 4.1643 -2.2902 0.1038 29 7 3.4822 -1.2029 0.0997 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 2.8242 1.3264 -0.8900 34 1 1.4892 2.0972 -0.0005 35 1 2.8241 1.3264 0.8899 36 1 0.3877 -2.4243 -0.1895 37 1 1.7101 -4.5402 -0.1770 38 1 7.4397 -3.4338 0.6118 39 1 6.0583 -2.5763 -0.1160 40 1 6.1368 -1.8852 2.1803 41 1 4.7947 -3.0499 2.0596 42 1 7.6072 -3.9508 2.7884 43 1 6.4794 -3.3513 4.0282 44 1 5.5582 -5.4022 4.1001 45 1 4.9891 -5.1530 2.4354 46 1 7.5471 -6.5122 3.3691 47 1 6.2480 -7.1824 2.3550 48 1 8.6410 -7.6374 1.3624 49 1 11.5054 -8.9805 0.3048 50 1 5.9634 -6.6999 0.1824 51 1 7.1467 -5.7794 -0.7818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088415175.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:35 Heat of formation + Delta-G solvation = 58.588705 kcal Electronic energy + Delta-G solvation = -32097.373268 eV Core-core repulsion = 28033.359836 eV Total energy + Delta-G solvation = -4064.013432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.41818 -41.10238 -38.97445 -38.06969 -36.47633 -35.13483 -34.14213 -34.02724 -32.52965 -31.51874 -29.34893 -28.83761 -27.67700 -26.79794 -25.79708 -25.30836 -23.97017 -23.15721 -22.76066 -21.36722 -20.15615 -19.19561 -18.88186 -18.49999 -17.97453 -17.47313 -17.00893 -16.67603 -16.36358 -15.93414 -15.65942 -15.59841 -15.40426 -15.29383 -15.10778 -14.82748 -14.65237 -14.47565 -14.19745 -13.89626 -13.71317 -13.44592 -13.28569 -13.06936 -12.98812 -12.92873 -12.74035 -12.65785 -12.36410 -12.33340 -12.16124 -11.81769 -11.77065 -11.62011 -11.50138 -11.39924 -11.25675 -11.15499 -11.04628 -10.80698 -10.59639 -9.54930 -8.98957 -8.86406 -7.92160 -5.21679 -0.35191 -0.13369 1.48859 1.50331 1.58620 1.66910 1.74491 1.98583 2.58241 2.68721 3.01228 3.40869 3.47267 3.56211 3.68986 3.77572 3.86247 3.94773 4.04655 4.13514 4.20982 4.25433 4.32998 4.40877 4.44445 4.52298 4.56592 4.60875 4.63903 4.71599 4.76395 4.83019 4.86477 4.87544 4.92417 4.96591 4.97953 5.02014 5.08575 5.20981 5.26802 5.33937 5.38754 5.41135 5.48501 5.57466 5.71338 5.96729 6.03909 6.28744 6.41123 7.03479 7.35271 7.67642 8.08425 8.33071 9.31248 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.002663 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.643374 B =10510.530152 C =10809.746671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.597 5.597 3 C 0.094 3.906 4 C 0.344 3.656 5 C -0.174 4.174 6 C -0.033 4.033 7 C -0.051 4.051 8 C 0.572 3.428 9 O -0.578 6.578 10 N -0.575 5.575 11 C 0.105 3.895 12 C -0.107 4.107 13 C -0.127 4.127 14 C -0.104 4.104 15 C -0.116 4.116 16 C 0.161 3.839 17 H 0.077 0.923 18 N -0.732 5.732 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.971 3.029 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.269 1.269 27 C 0.103 3.897 28 N -0.160 5.160 29 N -0.327 5.327 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.190 0.810 37 H 0.165 0.835 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.046 0.954 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.063 0.937 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.535 22.447 1.974 34.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.308 5.308 3 C -0.048 4.048 4 C 0.103 3.897 5 C -0.207 4.207 6 C -0.061 4.061 7 C -0.201 4.201 8 C 0.359 3.641 9 O -0.458 6.458 10 N -0.305 5.305 11 C -0.017 4.017 12 C -0.145 4.145 13 C -0.164 4.164 14 C -0.142 4.142 15 C -0.154 4.154 16 C 0.052 3.948 17 H 0.095 0.905 18 N -0.371 5.371 19 C -0.368 4.368 20 H 0.097 0.903 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.226 1.226 26 H -0.194 1.194 27 C -0.022 4.022 28 N -0.007 5.007 29 N -0.182 5.182 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.207 0.793 37 H 0.182 0.818 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.204 0.796 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.427 23.083 1.911 33.663 hybrid contribution -0.063 -1.687 -0.699 1.827 sum -24.490 21.396 1.212 32.543 Atomic orbital electron populations 1.22188 0.75536 1.05245 1.03317 1.46497 1.06933 1.02383 1.74994 1.21782 0.97441 0.83652 1.01903 1.20425 0.91110 0.88491 0.89648 1.22120 1.03580 0.89574 1.05393 1.22260 0.91972 1.01272 0.90593 1.22199 0.94238 0.93676 1.10035 1.17851 0.82045 0.87381 0.76799 1.90735 1.72893 1.29368 1.52814 1.47715 1.06421 1.10647 1.65759 1.22118 0.97912 0.83528 0.98164 1.21888 0.99403 0.99940 0.93260 1.21878 1.00053 0.94748 0.99729 1.21578 0.97595 0.94560 1.00511 1.21918 0.98080 0.98332 0.97087 1.20986 0.86813 0.95336 0.91690 0.90541 1.42609 1.17583 1.11588 1.65299 1.19599 0.95639 0.96090 1.25429 0.90342 1.25547 1.01768 0.96140 1.03269 1.69824 1.33484 1.05917 1.52777 0.85180 0.79711 0.76824 0.78313 1.21252 1.22569 1.19403 1.22103 0.92493 0.87468 1.00178 1.73400 1.29240 0.94457 1.03595 1.73152 1.04968 1.19601 1.20526 0.91276 0.88200 0.89733 0.92913 0.87567 0.92656 0.79290 0.81784 0.90411 0.87813 0.89392 0.92895 0.91650 0.90603 0.91427 0.93455 0.92310 0.93499 0.79620 0.94119 0.91892 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 10.26 127.77 1.31 1.52 16 2 N -0.60 -6.49 3.38 -753.61 -2.54 -9.03 16 3 C 0.09 0.85 10.19 127.77 1.30 2.15 16 4 C 0.34 6.05 7.44 133.21 0.99 7.04 16 5 C -0.17 -2.58 9.33 22.61 0.21 -2.37 16 6 C -0.03 -0.70 9.71 22.73 0.22 -0.47 16 7 C -0.05 -1.42 5.78 42.00 0.24 -1.18 16 8 C 0.57 19.78 6.13 86.79 0.53 20.31 16 9 O -0.58 -23.23 15.83 -3.88 -0.06 -23.30 16 10 N -0.58 -19.86 1.69 -828.12 -1.40 -21.26 16 11 C 0.10 3.09 4.88 86.07 0.42 3.51 16 12 C -0.11 -2.74 4.59 30.64 0.14 -2.60 16 13 C -0.13 -3.39 5.49 30.68 0.17 -3.23 16 14 C -0.10 -3.13 5.40 30.74 0.17 -2.96 16 15 C -0.12 -4.23 5.21 30.88 0.16 -4.06 16 16 C 0.16 6.59 2.29 44.97 0.10 6.69 16 17 H 0.08 3.04 3.29 -2.39 -0.01 3.04 16 18 N -0.73 -37.68 5.13 -323.05 -1.66 -39.33 16 19 C -0.24 -13.11 9.88 84.03 0.83 -12.28 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 21 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 22 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 23 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.10 4.23 5.60 86.61 0.49 4.71 16 28 N -0.16 -4.25 5.80 -48.51 -0.28 -4.53 16 29 N -0.33 -7.69 10.75 -55.17 -0.59 -8.28 16 30 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.10 -0.12 7.92 -2.38 -0.02 -0.14 16 32 H 0.08 0.06 6.01 -2.39 -0.01 0.05 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.26 7.79 -2.39 -0.02 0.24 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.19 1.18 6.11 -2.91 -0.02 1.17 16 37 H 0.16 3.19 7.72 -2.91 -0.02 3.17 16 38 H 0.08 2.42 6.07 -2.39 -0.01 2.41 16 39 H 0.10 3.00 5.89 -2.39 -0.01 2.99 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.44 5.36 -2.39 -0.01 1.43 16 42 H 0.07 1.96 5.47 -2.39 -0.01 1.95 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.53 5.38 -2.38 -0.01 1.52 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.05 1.78 7.85 -2.39 -0.02 1.76 16 48 H 0.37 20.81 7.80 -92.71 -0.72 20.09 16 49 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 50 H 0.06 2.79 6.73 -2.38 -0.02 2.77 16 51 H 0.05 2.06 8.08 -2.39 -0.02 2.05 16 Total: -1.00 -74.18 384.79 3.77 -70.41 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.25 Total: 33.68 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.75 Total: 12.91 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -6.19 Total: -142.43 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.18 3.77 -70.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415175.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.998 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds