Wall clock time and date at job start Wed Apr 1 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48502 * 109.47214 * 269.99548 * 3 2 1 5 5 H 1.48499 * 109.47099 * 29.99580 * 3 2 1 6 6 H 1.48500 * 109.47400 * 149.99232 * 3 2 1 7 7 C 1.38808 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00823 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.47162 * 126.52124 * 359.97438 * 9 7 2 11 11 C 1.53814 * 106.44921 * 210.36322 * 10 9 7 12 12 C 1.53683 * 105.56893 * 341.53337 * 11 10 9 13 13 C 1.52996 * 111.17430 * 121.20658 * 12 11 10 14 14 N 1.46501 * 109.46942 * 62.60047 * 13 12 11 15 15 C 1.34780 * 119.99902 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00166 * 179.97438 * 15 14 13 18 18 C 1.55024 * 113.23067 * 64.17006 * 17 15 14 19 19 C 1.54063 * 104.78048 * 146.42877 * 18 17 15 20 20 N 1.48234 * 106.69954 * 1.04502 * 19 18 17 21 21 C 1.48809 * 105.17463 * 332.51416 * 20 19 18 22 22 C 1.47672 * 108.91557 * 88.16854 * 20 19 18 23 23 C 1.53158 * 109.25680 * 312.87794 * 22 20 19 24 24 C 1.53155 * 110.10054 * 304.80622 * 23 22 20 25 25 C 1.53513 * 110.45323 * 245.09420 * 12 11 10 26 26 C 1.54193 * 106.58695 * 116.97868 * 25 12 11 27 27 C 1.54738 * 104.34719 * 335.43444 * 26 25 12 28 28 C 1.47251 * 126.52275 * 179.97438 * 9 7 2 29 29 H 1.09007 * 112.28418 * 26.89503 * 28 9 7 30 30 H 0.97000 * 119.99473 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.08890 * 330.08250 * 10 9 7 32 32 H 1.08998 * 110.09268 * 91.60860 * 10 9 7 33 33 H 1.09000 * 110.92791 * 222.13937 * 11 10 9 34 34 H 1.09002 * 109.52248 * 100.18986 * 11 10 9 35 35 H 1.09002 * 109.47232 * 302.59999 * 13 12 11 36 36 H 1.08997 * 109.47499 * 182.60545 * 13 12 11 37 37 H 0.96989 * 120.00548 * 359.97438 * 14 13 12 38 38 H 1.09000 * 110.34893 * 27.61638 * 18 17 15 39 39 H 1.09005 * 110.49097 * 265.31225 * 18 17 15 40 40 H 1.09006 * 110.00887 * 241.73439 * 19 18 17 41 41 H 1.09000 * 110.01469 * 120.35942 * 19 18 17 42 42 H 1.09002 * 110.93257 * 160.89754 * 21 20 19 43 43 H 1.09003 * 110.93289 * 284.53186 * 21 20 19 44 44 H 1.08996 * 109.50360 * 72.85408 * 22 20 19 45 45 H 1.08996 * 109.50481 * 192.97494 * 22 20 19 46 46 H 1.09004 * 109.37138 * 184.61181 * 23 22 20 47 47 H 1.08999 * 109.35797 * 64.99695 * 23 22 20 48 48 H 1.08993 * 109.63166 * 294.28738 * 24 23 22 49 49 H 1.08997 * 109.62870 * 173.68746 * 24 23 22 50 50 H 1.08999 * 110.04106 * 237.08658 * 25 12 11 51 51 H 1.09005 * 110.04164 * 358.54146 * 25 12 11 52 52 H 1.09000 * 110.80267 * 216.49919 * 26 25 12 53 53 H 1.09001 * 109.98684 * 93.96312 * 26 25 12 54 54 H 1.08998 * 110.65378 * 278.61921 * 27 26 25 55 55 H 1.08997 * 110.65047 * 155.53451 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1365 -2.5552 0.0005 11 6 -0.4247 -3.8692 0.7462 12 6 0.9019 -4.6451 0.7426 13 6 1.3700 -4.9461 2.1677 14 7 0.3873 -5.8049 2.8333 15 6 0.5911 -6.2021 4.1050 16 8 1.5878 -5.8481 4.6985 17 6 -0.4200 -7.0850 4.7899 18 6 -0.5589 -8.4811 4.1305 19 6 -0.8623 -9.4390 5.2984 20 7 -0.9139 -8.6104 6.5264 21 6 -0.0290 -7.4467 6.2486 22 6 -2.2903 -8.1069 6.7068 23 6 -2.7993 -7.5409 5.3778 24 6 -1.8324 -6.4744 4.8551 25 6 0.7673 -5.9340 -0.0803 26 6 1.7458 -5.8042 -1.2649 27 6 1.9228 -4.2782 -1.4506 28 6 1.9122 -3.7386 0.0005 29 1 2.9020 -3.7594 0.4568 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6093 -1.7162 0.5111 32 1 -0.5053 -2.6262 -1.0227 33 1 -1.1987 -4.4439 0.2375 34 1 -0.7292 -3.6483 1.7692 35 1 1.4713 -4.0128 2.7217 36 1 2.3334 -5.4548 2.1340 37 1 -0.4100 -6.0877 2.3588 38 1 0.3731 -8.7633 3.6405 39 1 -1.3800 -8.4846 3.4136 40 1 -0.0718 -10.1846 5.3843 41 1 -1.8225 -9.9295 5.1387 42 1 -0.2470 -6.6212 6.9262 43 1 1.0211 -7.7323 6.3108 44 1 -2.9374 -8.9235 7.0270 45 1 -2.2943 -7.3210 7.4619 46 1 -3.7827 -7.0951 5.5276 47 1 -2.8774 -8.3469 4.6480 48 1 -1.8308 -5.6190 5.5307 49 1 -2.1407 -6.1573 3.8589 50 1 1.0190 -6.7979 0.5349 51 1 -0.2495 -6.0296 -0.4612 52 1 1.3253 -6.2520 -2.1653 53 1 2.6983 -6.2712 -1.0142 54 1 1.0931 -3.8616 -2.0216 55 1 2.8736 -4.0577 -1.9357 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094568372.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:17 Heat of formation + Delta-G solvation = -27.914417 kcal Electronic energy + Delta-G solvation = -32868.155467 eV Core-core repulsion = 28903.931321 eV Total energy + Delta-G solvation = -3964.224145 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.32705 -41.15149 -39.71529 -36.33667 -35.41467 -33.54628 -33.27020 -32.97803 -31.80602 -30.23689 -29.47700 -28.47038 -26.14960 -25.61699 -25.35647 -23.93479 -22.72943 -22.10234 -21.50968 -21.01455 -20.37971 -19.60583 -18.97488 -18.17680 -17.19878 -17.01015 -16.93865 -16.30905 -16.25060 -15.80490 -15.55376 -15.21905 -15.18423 -14.90161 -14.83266 -14.33970 -14.10278 -13.94360 -13.86310 -13.68804 -13.58500 -13.51943 -13.37167 -12.85549 -12.84709 -12.68788 -12.54996 -12.49962 -12.16724 -12.04483 -12.01613 -11.85426 -11.77749 -11.64313 -11.60780 -11.57829 -11.45324 -11.42963 -11.34612 -11.06990 -10.75763 -10.69284 -10.09931 -9.49330 -8.87086 -7.74130 -5.20430 1.44226 1.45309 1.53788 1.55143 2.12443 2.48322 2.96740 3.29725 3.45054 3.52280 3.61071 3.67719 3.70223 3.74302 3.94438 4.01847 4.07871 4.14437 4.20522 4.31156 4.38130 4.42152 4.45669 4.47125 4.54747 4.57289 4.62505 4.63643 4.66357 4.77193 4.84373 4.88158 4.92412 4.95025 4.95975 4.98686 5.05312 5.06840 5.13073 5.13521 5.16564 5.19709 5.25398 5.29668 5.38053 5.44175 5.48688 5.50925 5.58452 5.68453 5.77671 5.88576 6.01142 6.39702 6.53769 7.12944 7.21616 7.81068 8.47157 9.23702 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.002823 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.436631 B = 9915.464921 C =10686.790044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.071 4.071 13 C 0.154 3.846 14 N -0.703 5.703 15 C 0.532 3.468 16 O -0.586 6.586 17 C -0.114 4.114 18 C -0.128 4.128 19 C 0.031 3.969 20 N -0.505 5.505 21 C 0.057 3.943 22 C 0.029 3.971 23 C -0.146 4.146 24 C -0.105 4.105 25 C -0.102 4.102 26 C -0.111 4.111 27 C -0.132 4.132 28 C 0.154 3.846 29 H 0.053 0.947 30 H 0.245 0.755 31 H 0.083 0.917 32 H -0.018 1.018 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.062 0.938 37 H 0.413 0.587 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.079 0.921 53 H 0.071 0.929 54 H 0.045 0.955 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 -22.885 6.657 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.015 3.985 11 C -0.154 4.154 12 C -0.073 4.073 13 C 0.030 3.970 14 N -0.354 5.354 15 C 0.319 3.681 16 O -0.466 6.466 17 C -0.119 4.119 18 C -0.167 4.167 19 C -0.097 4.097 20 N -0.226 5.226 21 C -0.072 4.072 22 C -0.100 4.100 23 C -0.185 4.185 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.149 4.149 27 C -0.172 4.172 28 C 0.046 3.954 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.000 1.000 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.250 0.750 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.097 0.903 53 H 0.090 0.910 54 H 0.064 0.936 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.775 -22.718 7.623 24.902 hybrid contribution 0.172 2.270 -1.077 2.518 sum -6.603 -20.448 6.546 22.463 Atomic orbital electron populations 1.69896 1.05990 1.24635 1.59089 1.25521 0.96563 1.00637 1.03220 0.85129 0.77606 0.79576 0.77365 1.21408 1.22067 1.19833 1.19418 0.90811 0.83892 1.41710 0.90569 1.44768 1.02496 1.00425 1.85333 1.21620 0.84629 0.96659 0.95612 1.22546 0.96101 0.96641 1.00097 1.21845 0.95974 0.96314 0.93134 1.21050 0.91613 0.92766 0.91616 1.45845 1.25480 1.50642 1.13429 1.20516 0.86355 0.79838 0.81398 1.90693 1.31696 1.58289 1.65955 1.22546 0.95255 0.96413 0.97694 1.22946 1.03521 0.90955 0.99295 1.23147 1.03558 0.96191 0.86820 1.66422 1.07269 1.14480 1.34391 1.23253 0.98209 0.93438 0.92348 1.22738 0.89660 1.00471 0.97100 1.22243 0.99067 0.98771 0.98370 1.21839 0.91355 0.98512 1.02636 1.22187 1.00821 0.94966 0.95971 1.22224 0.99833 0.94306 0.98537 1.22863 1.00166 0.96491 0.97671 1.21962 0.94931 0.84283 0.94252 0.92869 0.94459 0.89920 0.99960 0.89438 0.93159 0.95051 0.91926 0.75019 0.91355 0.87946 0.90082 0.88410 0.90911 0.91083 0.88633 0.91193 0.89706 0.89423 0.92541 0.90178 0.89891 0.90122 0.90275 0.91044 0.93596 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.39 10.06 21.65 0.22 -56.17 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 3 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.23 -12.90 10.33 84.03 0.87 -12.03 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -30.71 3.01 -666.42 -2.00 -32.71 16 10 C 0.14 6.74 5.69 86.53 0.49 7.23 16 11 C -0.12 -3.98 5.81 31.10 0.18 -3.80 16 12 C -0.07 -2.19 0.65 -51.21 -0.03 -2.23 16 13 C 0.15 4.85 4.27 86.38 0.37 5.22 16 14 N -0.70 -17.26 4.81 -463.06 -2.23 -19.48 16 15 C 0.53 14.53 6.82 87.66 0.60 15.13 16 16 O -0.59 -21.77 16.15 -3.05 -0.05 -21.82 16 17 C -0.11 -2.19 0.97 -51.11 -0.05 -2.23 16 18 C -0.13 -1.70 5.49 31.65 0.17 -1.52 16 19 C 0.03 0.39 6.20 86.41 0.54 0.92 16 20 N -0.51 -8.41 6.07 -878.04 -5.33 -13.74 16 21 C 0.06 1.22 5.46 86.72 0.47 1.69 16 22 C 0.03 0.36 5.85 86.21 0.50 0.87 16 23 C -0.15 -1.55 5.52 30.70 0.17 -1.38 16 24 C -0.11 -1.65 5.01 30.99 0.16 -1.50 16 25 C -0.10 -2.29 5.62 31.17 0.18 -2.11 16 26 C -0.11 -2.68 6.83 31.59 0.22 -2.46 16 27 C -0.13 -4.55 6.39 31.81 0.20 -4.34 16 28 C 0.15 6.08 3.55 46.05 0.16 6.24 16 29 H 0.05 2.18 7.96 -2.38 -0.02 2.16 16 30 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.08 4.66 5.45 -2.39 -0.01 4.64 16 32 H -0.02 -0.90 7.76 -2.39 -0.02 -0.91 16 33 H 0.09 2.45 7.11 -2.39 -0.02 2.43 16 34 H 0.05 1.78 7.62 -2.39 -0.02 1.76 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.41 7.69 7.45 -92.72 -0.69 7.00 16 38 H 0.07 1.01 8.00 -2.39 -0.02 0.99 16 39 H 0.10 0.89 6.94 -2.38 -0.02 0.88 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.10 0.81 6.94 -2.39 -0.02 0.79 16 42 H 0.07 1.67 7.70 -2.39 -0.02 1.65 16 43 H 0.07 1.81 7.90 -2.39 -0.02 1.79 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 46 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.09 0.69 5.37 -2.39 -0.01 0.68 16 48 H 0.06 1.06 8.07 -2.39 -0.02 1.05 16 49 H 0.08 1.13 7.73 -2.39 -0.02 1.11 16 50 H 0.08 1.54 7.47 -2.39 -0.02 1.52 16 51 H 0.08 1.59 7.10 -2.38 -0.02 1.57 16 52 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 54 H 0.05 1.79 7.35 -2.39 -0.02 1.77 16 55 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -71.32 399.99 -1.51 -72.83 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.18 Total: 22.23 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.66 Total: 0.30 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -9.34 Total: -122.10 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -71.32 -1.51 -72.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094568372.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.916 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds