Wall clock time and date at job start Wed Apr 1 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48507 * 109.46850 * 270.00093 * 3 2 1 5 5 H 1.48493 * 109.47111 * 29.99776 * 3 2 1 6 6 H 1.48501 * 109.47370 * 150.00320 * 3 2 1 7 7 C 1.38819 * 119.99537 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99277 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99934 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.32500 * 34.65243 * 10 9 7 12 12 C 1.53040 * 109.32344 * 154.11197 * 10 9 7 13 13 C 1.53967 * 108.82253 * 175.67993 * 12 10 9 14 14 H 1.09003 * 112.99638 * 168.08955 * 13 12 10 15 15 C 1.55428 * 106.41699 * 293.81934 * 13 12 10 16 16 C 1.55170 * 100.35294 * 73.37924 * 15 13 12 17 17 H 1.09009 * 112.48260 * 163.35449 * 16 15 13 18 18 C 1.52984 * 109.32704 * 274.99937 * 10 9 7 19 19 N 1.47785 * 104.87696 * 40.83013 * 16 15 13 20 20 C 1.34775 * 125.85779 * 153.93730 * 19 16 15 21 21 O 1.21280 * 120.00361 * 354.58573 * 20 19 16 22 22 C 1.51494 * 119.99903 * 174.58551 * 20 19 16 23 23 C 1.52491 * 108.85761 * 299.05517 * 22 20 19 24 24 C 1.52147 * 112.51702 * 188.49318 * 23 22 20 25 25 C 1.52273 * 112.66235 * 45.31060 * 24 23 22 26 26 N 1.45836 * 112.45626 * 313.41329 * 25 24 23 27 27 C 1.45838 * 114.02602 * 289.01101 * 26 25 24 28 28 C 1.52273 * 112.21701 * 70.23955 * 27 26 25 29 29 C 1.52158 * 112.56511 * 47.16628 * 28 27 26 30 30 C 1.46506 * 112.07457 * 57.48408 * 26 25 24 31 31 C 1.48742 * 107.40203 * 333.51903 * 19 16 15 32 32 H 0.97006 * 120.00120 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00477 * 0.02562 * 9 7 2 34 34 H 1.08992 * 109.57944 * 295.48298 * 12 10 9 35 35 H 1.08998 * 109.57382 * 55.74785 * 12 10 9 36 36 H 1.09008 * 110.64202 * 315.84556 * 15 13 12 37 37 H 1.09007 * 111.83064 * 191.40494 * 15 13 12 38 38 H 1.09003 * 109.52822 * 64.76215 * 18 10 9 39 39 H 1.08991 * 109.59484 * 304.56994 * 18 10 9 40 40 H 1.09702 * 109.04473 * 309.87670 * 23 22 20 41 41 H 1.09677 * 109.07834 * 67.05691 * 23 22 20 42 42 H 1.08677 * 110.93705 * 280.36073 * 24 23 22 43 43 H 1.10587 * 107.97901 * 164.29956 * 24 23 22 44 44 H 1.09678 * 109.04350 * 192.13894 * 25 24 23 45 45 H 1.09630 * 109.13953 * 74.86536 * 25 24 23 46 46 H 1.09668 * 109.20378 * 191.31239 * 27 26 25 47 47 H 1.09585 * 109.36130 * 308.88067 * 27 26 25 48 48 H 1.10549 * 107.92865 * 166.33411 * 28 27 26 49 49 H 1.08701 * 110.77782 * 282.33041 * 28 27 26 50 50 H 1.09717 * 109.19960 * 193.44313 * 29 28 27 51 51 H 1.09709 * 109.22062 * 76.16025 * 29 28 27 52 52 H 1.08869 * 109.93121 * 175.82461 * 30 26 25 53 53 H 1.08893 * 109.89678 * 54.80704 * 30 26 25 54 54 H 1.09005 * 109.83933 * 241.63340 * 31 19 16 55 55 H 1.09003 * 109.93982 * 120.50257 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9710 -3.5462 0.5843 12 6 1.1859 -4.7450 0.6300 13 6 1.9216 -6.0935 0.5260 14 1 1.4636 -6.8762 1.1307 15 6 2.0028 -6.4339 -0.9884 16 6 3.0853 -5.4199 -1.4445 17 1 3.5100 -5.6724 -2.4162 18 6 2.4200 -4.0324 -1.4387 19 7 4.0958 -5.4330 -0.3662 20 6 5.4011 -5.1268 -0.5036 21 8 5.8584 -4.9009 -1.6040 22 6 6.2971 -5.0649 0.7163 23 6 5.7717 -3.9882 1.6596 24 6 6.7225 -3.7108 2.8146 25 6 8.1715 -3.5835 2.3640 26 7 8.5668 -4.6502 1.4514 27 6 8.6958 -5.9570 2.0858 28 6 7.3474 -6.5333 2.4964 29 6 6.3080 -6.4326 1.3897 30 6 7.7135 -4.7013 0.2616 31 6 3.4033 -5.8340 0.8877 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 1.0059 -4.5070 1.6783 35 1 0.2351 -4.8036 0.1003 36 1 1.0484 -6.2393 -1.4777 37 1 2.3280 -7.4607 -1.1562 38 1 3.1123 -3.2947 -1.8446 39 1 1.5168 -4.0587 -2.0480 40 1 5.6114 -3.0627 1.0927 41 1 4.8000 -4.3040 2.0584 42 1 6.6232 -4.4663 3.5894 43 1 6.4262 -2.7513 3.2778 44 1 8.8235 -3.6031 3.2457 45 1 8.3107 -2.6146 1.8704 46 1 9.1845 -6.6493 1.3897 47 1 9.3353 -5.8694 2.9714 48 1 7.4927 -7.6032 2.7339 49 1 6.9893 -6.0640 3.4091 50 1 5.3142 -6.6334 1.8088 51 1 6.5090 -7.2024 0.6344 52 1 8.0831 -5.4584 -0.4279 53 1 7.7024 -3.7289 -0.2285 54 1 3.4723 -5.0309 1.6215 55 1 3.8538 -6.7427 1.2869 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094945496.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:12 Heat of formation + Delta-G solvation = -30.228967 kcal Electronic energy + Delta-G solvation = -34275.864928 eV Core-core repulsion = 30311.540416 eV Total energy + Delta-G solvation = -3964.324512 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.59891 -41.18361 -39.15918 -36.57721 -34.99564 -34.06426 -33.82321 -32.78693 -31.85724 -31.58039 -29.56192 -27.42944 -26.99411 -25.70388 -25.38716 -24.20001 -22.57140 -22.51664 -22.44296 -20.69472 -20.04738 -19.60319 -19.15305 -18.12488 -17.24014 -16.95519 -16.51043 -16.32638 -16.14089 -16.04508 -15.69553 -15.51332 -15.19233 -14.92124 -14.55898 -14.39718 -14.20910 -14.04216 -13.89234 -13.77941 -13.55925 -13.47597 -13.39395 -13.21145 -12.97112 -12.86326 -12.80038 -12.59176 -12.51818 -12.47166 -12.25706 -12.14046 -11.92601 -11.83093 -11.81209 -11.67723 -11.45946 -11.34830 -11.00481 -10.88614 -10.76359 -10.62051 -9.61923 -9.04657 -9.02618 -8.00580 -5.27552 1.38243 1.40271 1.47806 1.56811 1.95071 2.49169 2.97483 3.28435 3.32915 3.49748 3.53462 3.58886 3.66061 3.71566 3.93371 3.95427 4.04805 4.10279 4.16790 4.20461 4.22434 4.25516 4.29197 4.36734 4.39689 4.47014 4.50602 4.59114 4.61889 4.63646 4.70739 4.77064 4.80681 4.90665 4.92299 4.94993 5.00649 5.02355 5.04284 5.07049 5.08826 5.12719 5.20240 5.22093 5.24210 5.31065 5.36733 5.42670 5.45762 5.50375 5.53371 6.11622 6.23198 6.37872 6.55212 7.11901 7.29130 8.06424 8.29675 9.22461 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.010432 B = 0.004367 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.434046 B = 6410.733556 C = 8009.577128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.292 1.292 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.234 4.234 8 H 0.056 0.944 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.036 0.964 12 C -0.116 4.116 13 C -0.081 4.081 14 H 0.145 0.855 15 C -0.112 4.112 16 C 0.129 3.871 17 H 0.078 0.922 18 C -0.134 4.134 19 N -0.605 5.605 20 C 0.531 3.469 21 O -0.591 6.591 22 C -0.087 4.087 23 C -0.104 4.104 24 C -0.144 4.144 25 C 0.065 3.935 26 N -0.551 5.551 27 C 0.061 3.939 28 C -0.146 4.146 29 C -0.105 4.105 30 C 0.097 3.903 31 C 0.090 3.910 32 H 0.252 0.748 33 H 0.374 0.626 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.010 0.990 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.073 0.927 53 H 0.049 0.951 54 H 0.071 0.929 55 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -21.060 9.344 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.789 3.211 4 H -0.219 1.219 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.366 4.366 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.070 3.930 11 H 0.054 0.946 12 C -0.154 4.154 13 C -0.100 4.100 14 H 0.163 0.837 15 C -0.150 4.150 16 C 0.025 3.975 17 H 0.096 0.904 18 C -0.175 4.175 19 N -0.337 5.337 20 C 0.320 3.680 21 O -0.472 6.472 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.182 4.182 25 C -0.063 4.063 26 N -0.272 5.272 27 C -0.066 4.066 28 C -0.185 4.185 29 C -0.142 4.142 30 C -0.032 4.032 31 C -0.031 4.031 32 H 0.061 0.939 33 H 0.206 0.794 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.079 0.921 52 H 0.092 0.908 53 H 0.068 0.932 54 H 0.089 0.911 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.919 -20.658 8.675 25.863 hybrid contribution -0.988 1.910 -0.693 2.259 sum 11.930 -18.747 7.983 23.612 Atomic orbital electron populations 1.69776 1.06178 1.25968 1.59516 1.25374 0.96298 1.00431 1.03878 0.85347 0.77868 0.80531 0.77335 1.21930 1.21318 1.20019 1.19364 0.90512 0.85716 1.41018 0.92602 1.42613 1.05400 1.00918 1.88557 1.20456 0.94293 0.85422 0.92841 0.94575 1.22059 0.98621 0.93860 1.00863 1.22709 0.93149 0.97159 0.96989 0.83690 1.22995 0.97890 0.98478 0.95615 1.22262 0.88392 0.95314 0.91562 0.90410 1.22645 0.98856 0.95669 1.00371 1.49033 1.06797 1.66406 1.11486 1.21018 0.81453 0.74895 0.90629 1.90648 1.74846 1.52211 1.29488 1.21151 0.96014 0.98977 0.93031 1.21393 1.00141 0.96207 0.96424 1.21948 0.95741 1.03446 0.97109 1.21821 0.94084 0.93910 0.96474 1.60223 1.51519 1.06984 1.08439 1.21915 0.96418 0.88370 0.99890 1.21954 0.95345 1.03400 0.97792 1.21497 1.01903 0.92356 0.98457 1.21563 0.88178 1.01073 0.92358 1.23123 0.93124 1.00986 0.85866 0.93912 0.79390 0.91570 0.91468 0.89077 0.88306 0.97134 0.92094 0.95721 0.90337 0.88915 0.91947 0.88449 0.92599 0.90928 0.88928 0.89571 0.90341 0.89293 0.92115 0.90837 0.93199 0.91076 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.43 13.06 21.65 0.28 -59.15 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.96 47.97 29.55 68.60 2.03 49.99 16 4 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.23 -13.51 9.92 84.04 0.83 -12.68 16 8 H 0.06 3.28 7.83 -2.91 -0.02 3.26 16 9 N -0.74 -37.50 5.11 -322.90 -1.65 -39.15 16 10 C 0.18 6.96 2.39 45.00 0.11 7.07 16 11 H 0.04 1.51 5.88 -2.39 -0.01 1.49 16 12 C -0.12 -3.25 4.95 30.93 0.15 -3.10 16 13 C -0.08 -1.50 4.33 -9.05 -0.04 -1.54 16 14 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.11 -2.22 6.21 32.17 0.20 -2.02 16 16 C 0.13 3.84 3.96 45.79 0.18 4.02 16 17 H 0.08 2.51 7.98 -2.38 -0.02 2.49 16 18 C -0.13 -5.19 5.28 30.89 0.16 -5.02 16 19 N -0.61 -17.09 2.40 -778.95 -1.87 -18.96 16 20 C 0.53 17.28 6.46 87.91 0.57 17.84 16 21 O -0.59 -24.46 16.16 -3.03 -0.05 -24.51 16 22 C -0.09 -2.17 0.43 -52.98 -0.02 -2.19 16 23 C -0.10 -2.69 4.44 30.14 0.13 -2.56 16 24 C -0.14 -2.84 5.12 30.07 0.15 -2.69 16 25 C 0.07 1.27 5.77 86.26 0.50 1.77 16 26 N -0.55 -11.55 4.79 -902.21 -4.32 -15.87 16 27 C 0.06 0.90 5.77 86.26 0.50 1.40 16 28 C -0.15 -1.82 5.13 30.08 0.15 -1.66 16 29 C -0.10 -1.79 4.31 30.14 0.13 -1.66 16 30 C 0.10 2.62 4.18 86.42 0.36 2.98 16 31 C 0.09 1.82 4.06 86.53 0.35 2.18 16 32 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 33 H 0.37 20.13 7.80 -92.71 -0.72 19.41 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.90 7.96 -2.39 -0.02 1.89 16 36 H 0.09 1.78 7.70 -2.38 -0.02 1.76 16 37 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.06 2.35 8.00 -2.39 -0.02 2.33 16 40 H 0.02 0.83 8.14 -2.01 -0.02 0.82 16 41 H 0.08 1.94 4.98 -2.03 -0.01 1.93 16 42 H 0.09 1.40 5.70 -2.56 -0.01 1.39 16 43 H 0.06 1.29 8.27 -1.53 -0.01 1.28 16 44 H 0.10 1.44 8.11 -2.03 -0.02 1.42 16 45 H 0.06 1.27 8.19 -2.05 -0.02 1.26 16 46 H 0.07 1.06 8.20 -2.03 -0.02 1.05 16 47 H 0.09 1.03 8.11 -2.08 -0.02 1.02 16 48 H 0.09 0.75 8.27 -1.55 -0.01 0.73 16 49 H 0.08 0.88 5.68 -2.54 -0.01 0.86 16 50 H 0.09 1.26 4.73 -2.00 -0.01 1.25 16 51 H 0.06 1.09 8.14 -2.01 -0.02 1.07 16 52 H 0.07 2.06 8.07 -2.46 -0.02 2.04 16 53 H 0.05 1.64 8.08 -2.44 -0.02 1.62 16 54 H 0.07 1.64 4.15 -2.38 -0.01 1.63 16 55 H 0.11 1.45 5.74 -2.39 -0.01 1.44 16 Total: -1.00 -75.29 387.19 -0.48 -75.77 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.20 Total: 33.22 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.89 Total: -1.35 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -7.55 Total: -133.13 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 49.99 kcal Total: -75.29 -0.48 -75.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094945496.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.544 kcal (2) G-P(sol) polarization free energy of solvation -75.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds