Wall clock time and date at job start Wed Apr 1 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00005 * 2 1 4 4 C 1.46903 * 110.99452 * 123.94610 * 2 1 3 5 5 H 1.09000 * 109.46580 * 173.39448 * 4 2 1 6 6 C 1.53004 * 109.46806 * 53.40077 * 4 2 1 7 7 N 1.46497 * 109.47529 * 64.99504 * 6 4 2 8 8 C 1.34946 * 126.03379 * 124.71205 * 7 6 4 9 9 C 1.35326 * 107.74351 * 179.84441 * 8 7 6 10 10 C 1.39871 * 107.91929 * 0.42271 * 9 8 7 11 11 N 1.30839 * 108.20264 * 359.74065 * 10 9 8 12 12 C 1.50696 * 109.47543 * 293.39997 * 4 2 1 13 13 O 1.21280 * 119.99974 * 27.57942 * 12 4 2 14 14 N 1.34780 * 119.99911 * 207.58225 * 12 4 2 15 15 C 1.46503 * 119.99643 * 179.97438 * 14 12 4 16 16 H 1.09001 * 110.68496 * 38.96427 * 15 14 12 17 17 C 1.58512 * 110.51743 * 162.85388 * 15 14 12 18 18 C 1.55840 * 102.75766 * 118.05875 * 17 15 14 19 19 H 1.08999 * 115.55896 * 159.31910 * 18 17 15 20 20 C 1.55843 * 105.06227 * 287.92362 * 18 17 15 21 21 C 1.54853 * 103.44651 * 72.57778 * 20 18 17 22 22 C 1.55845 * 103.44471 * 0.02562 * 21 20 18 23 23 H 1.08994 * 115.56458 * 158.81177 * 22 21 20 24 24 N 1.50235 * 101.05063 * 32.93739 * 22 21 20 25 25 C 1.36940 * 130.84113 * 125.31892 * 24 22 21 26 26 H 1.07996 * 119.99775 * 352.03952 * 25 24 22 27 27 C 1.38809 * 120.00224 * 172.03904 * 25 24 22 28 28 N 1.31620 * 120.00217 * 160.14003 * 27 25 24 29 29 Si 1.86798 * 119.99812 * 340.13419 * 27 25 24 30 30 H 1.48501 * 109.47073 * 88.88090 * 29 27 25 31 31 H 1.48502 * 109.47106 * 208.87924 * 29 27 25 32 32 H 1.48497 * 109.47592 * 328.88023 * 29 27 25 33 33 H 1.08998 * 109.47688 * 301.62841 * 1 2 3 34 34 H 1.09005 * 109.46640 * 61.62408 * 1 2 3 35 35 H 1.09000 * 109.47312 * 181.61933 * 1 2 3 36 36 H 1.08998 * 109.46790 * 183.95152 * 3 2 1 37 37 H 1.09011 * 109.47114 * 303.94795 * 3 2 1 38 38 H 1.08999 * 109.47795 * 63.95129 * 3 2 1 39 39 H 1.08998 * 109.46848 * 184.99827 * 6 4 2 40 40 H 1.09003 * 109.47137 * 304.99253 * 6 4 2 41 41 H 1.07998 * 126.13471 * 0.02562 * 8 7 6 42 42 H 1.07994 * 126.04163 * 180.16268 * 9 8 7 43 43 H 1.07994 * 125.89926 * 179.75966 * 10 9 8 44 44 H 0.97002 * 120.00000 * 359.97438 * 14 12 4 45 45 H 1.09003 * 111.17002 * 359.69372 * 17 15 14 46 46 H 1.09005 * 110.73822 * 236.21754 * 17 15 14 47 47 H 1.09006 * 110.62959 * 314.08760 * 20 18 17 48 48 H 1.09000 * 110.63045 * 191.06809 * 20 18 17 49 49 H 1.08998 * 110.62752 * 241.51165 * 21 20 18 50 50 H 1.08996 * 110.76712 * 118.55146 * 21 20 18 51 51 H 0.96999 * 120.00336 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7659 1.1378 5 1 3.0786 -0.8491 1.0496 6 6 1.3751 -2.1645 1.1416 7 7 1.8097 -2.8949 -0.0516 8 6 2.4225 -4.0971 -0.0672 9 6 2.6538 -4.4254 -1.3595 10 6 2.1744 -3.3838 -2.1605 11 7 1.6683 -2.4658 -1.3776 12 6 1.6486 -0.0590 2.4227 13 8 0.6628 0.6451 2.4805 14 7 2.4339 -0.2094 3.5077 15 6 2.0971 0.4783 4.7567 16 1 1.0196 0.4711 4.9216 17 6 2.8731 -0.1726 5.9760 18 6 3.7535 1.0053 6.4918 19 1 4.1078 0.9130 7.5185 20 6 4.8621 1.1855 5.4115 21 6 4.1042 1.8215 4.2203 22 6 2.6409 1.9394 4.7433 23 1 2.0153 2.6695 4.2299 24 7 2.8771 2.1919 6.2053 25 6 2.4414 3.2014 7.0216 26 1 1.9280 4.0530 6.6003 27 6 2.6596 3.1302 8.3906 28 7 2.6107 4.2229 9.1226 29 14 3.0226 1.4833 9.1940 30 1 4.4866 1.2351 9.1747 31 1 2.5421 1.5014 10.5991 32 1 2.3277 0.4042 8.4472 33 1 -0.3634 0.5389 0.8750 34 1 -0.3633 0.4884 -0.9043 35 1 -0.3634 -1.0272 0.0290 36 1 3.0828 1.3431 -0.0708 37 1 1.5899 1.9163 -0.8526 38 1 1.7044 1.8724 0.9232 39 1 1.6964 -2.7020 2.0337 40 1 0.2883 -2.0801 1.1401 41 1 2.6794 -4.6922 0.7967 42 1 3.1288 -5.3297 -1.7101 43 1 2.2148 -3.3444 -3.2390 44 1 3.2222 -0.7728 3.4615 45 1 3.4974 -1.0033 5.6469 46 1 2.1757 -0.4975 6.7482 47 1 5.2826 0.2206 5.1280 48 1 5.6434 1.8552 5.7710 49 1 4.1487 1.1720 3.3461 50 1 4.5084 2.8063 3.9864 51 1 2.7635 4.1732 10.0792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109400830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:57 Heat of formation + Delta-G solvation = 111.578212 kcal Electronic energy + Delta-G solvation = -32346.229346 eV Core-core repulsion = 28284.513712 eV Total energy + Delta-G solvation = -4061.715635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.13215 -41.60760 -40.54760 -37.63880 -35.61674 -34.54190 -34.09320 -31.53572 -31.15568 -30.83886 -30.40899 -29.23199 -28.52709 -26.08947 -25.66039 -23.91111 -22.82082 -22.12442 -21.77466 -21.59417 -20.88006 -20.40253 -19.08307 -18.46948 -17.97045 -17.60989 -17.24827 -16.71824 -16.57365 -16.13076 -15.69874 -15.52996 -15.37435 -15.10997 -14.98424 -14.79776 -14.38792 -14.31268 -14.09997 -13.78198 -13.50106 -13.38751 -13.14983 -13.12133 -13.05664 -12.88471 -12.83239 -12.57308 -12.51643 -12.46178 -12.28138 -12.18017 -11.87953 -11.48808 -11.36222 -11.27833 -11.21690 -11.03678 -10.89438 -10.20286 -10.10427 -9.34159 -9.20782 -9.08139 -8.15556 -5.38757 1.15347 1.24045 1.37837 1.43998 1.48289 1.72488 2.14909 2.17010 2.41274 2.86321 2.95459 3.18327 3.52897 3.58493 3.73814 3.77030 3.84641 3.97593 4.03429 4.17713 4.19636 4.22748 4.27083 4.39557 4.41437 4.49632 4.53560 4.57056 4.63268 4.64222 4.67698 4.83233 4.87773 4.90091 4.95502 4.99868 5.03644 5.08795 5.11425 5.25833 5.28725 5.31474 5.32592 5.55767 5.61921 5.87369 5.92159 5.96541 6.09007 6.30038 6.54387 6.59100 7.02520 7.23715 7.45259 8.17455 9.05434 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.002793 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.097441 B =10022.415864 C =10596.241228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.495 5.495 3 C 0.019 3.981 4 C 0.066 3.934 5 H 0.124 0.876 6 C 0.144 3.856 7 N -0.372 5.372 8 C 0.048 3.952 9 C -0.286 4.286 10 C 0.017 3.983 11 N -0.292 5.292 12 C 0.489 3.511 13 O -0.566 6.566 14 N -0.691 5.691 15 C 0.146 3.854 16 H 0.062 0.938 17 C -0.125 4.125 18 C 0.098 3.902 19 H 0.077 0.923 20 C -0.120 4.120 21 C -0.116 4.116 22 C 0.126 3.874 23 H 0.061 0.939 24 N -0.631 5.631 25 C -0.215 4.215 26 H 0.051 0.949 27 C -0.055 4.055 28 N -0.971 5.971 29 Si 0.953 3.047 30 H -0.274 1.274 31 H -0.320 1.320 32 H -0.235 1.235 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.018 0.982 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.206 0.794 42 H 0.161 0.839 43 H 0.192 0.808 44 H 0.418 0.582 45 H 0.121 0.879 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.045 0.955 49 H 0.095 0.905 50 H 0.041 0.959 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -23.139 -20.638 31.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.217 5.217 3 C -0.130 4.130 4 C -0.048 4.048 5 H 0.142 0.858 6 C 0.021 3.979 7 N -0.155 5.155 8 C -0.097 4.097 9 C -0.315 4.315 10 C -0.170 4.170 11 N -0.112 5.112 12 C 0.274 3.726 13 O -0.445 6.445 14 N -0.345 5.345 15 C 0.038 3.962 16 H 0.080 0.920 17 C -0.164 4.164 18 C -0.007 4.007 19 H 0.095 0.905 20 C -0.159 4.159 21 C -0.155 4.155 22 C 0.018 3.982 23 H 0.080 0.920 24 N -0.355 5.355 25 C -0.343 4.343 26 H 0.069 0.931 27 C -0.247 4.247 28 N -0.619 5.619 29 Si 0.783 3.217 30 H -0.202 1.202 31 H -0.249 1.249 32 H -0.159 1.159 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.157 0.843 40 H 0.102 0.898 41 H 0.222 0.778 42 H 0.178 0.822 43 H 0.208 0.792 44 H 0.256 0.744 45 H 0.139 0.861 46 H 0.082 0.918 47 H 0.127 0.873 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.060 0.940 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.119 -21.456 -20.623 29.923 hybrid contribution 0.152 0.077 1.666 1.675 sum 3.271 -21.378 -18.957 28.759 Atomic orbital electron populations 1.22579 0.87354 1.01877 1.01434 1.62526 1.08723 1.13587 1.36858 1.22463 1.00848 0.88906 1.00733 1.22241 1.02836 0.93857 0.85893 0.85817 1.21768 1.00609 0.89976 0.85507 1.48563 1.46418 1.15254 1.05244 1.23168 0.97442 0.88228 1.00866 1.21799 1.13760 1.03694 0.92251 1.24387 0.98783 0.92677 1.01164 1.77689 1.23599 1.22774 0.87157 1.22137 0.82668 0.81871 0.85951 1.90681 1.28775 1.41108 1.83905 1.46123 1.29273 1.49014 1.10067 1.22710 0.98207 0.91877 0.83361 0.92027 1.23871 0.98866 0.97429 0.96215 1.23509 0.92381 0.87277 0.97518 0.90550 1.22927 0.96466 1.01543 0.94991 1.22820 0.94533 1.00257 0.97901 1.23276 0.96235 0.94621 0.84026 0.92032 1.46847 1.56051 1.26278 1.06286 1.18503 1.31436 0.95787 0.88594 0.93123 1.25525 1.01966 1.00817 0.96434 1.69974 1.56828 1.28692 1.06424 0.85861 0.77834 0.81931 0.76052 1.20186 1.24947 1.15916 0.93564 0.92065 0.91681 0.90572 0.90960 0.96342 0.84253 0.89823 0.77777 0.82176 0.79159 0.74381 0.86067 0.91811 0.87340 0.93572 0.88708 0.93997 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.81 127.69 1.13 1.48 16 2 N -0.50 -10.57 3.98 -927.71 -3.69 -14.26 16 3 C 0.02 0.42 9.22 127.69 1.18 1.59 16 4 C 0.07 1.09 2.50 44.17 0.11 1.20 16 5 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 6 C 0.14 1.89 5.56 86.38 0.48 2.37 16 7 N -0.37 -5.70 3.68 -348.05 -1.28 -6.98 16 8 C 0.05 0.52 11.45 83.54 0.96 1.48 16 9 C -0.29 -3.60 10.80 21.99 0.24 -3.36 16 10 C 0.02 0.27 12.03 85.24 1.03 1.29 16 11 N -0.29 -5.96 11.44 -57.02 -0.65 -6.61 16 12 C 0.49 10.67 5.95 87.66 0.52 11.19 16 13 O -0.57 -17.92 12.20 -3.03 -0.04 -17.95 16 14 N -0.69 -13.00 3.59 -428.57 -1.54 -14.54 16 15 C 0.15 4.26 3.21 47.97 0.15 4.41 16 16 H 0.06 2.19 7.77 -2.39 -0.02 2.17 16 17 C -0.12 -3.39 6.16 33.55 0.21 -3.18 16 18 C 0.10 3.56 3.53 46.22 0.16 3.72 16 19 H 0.08 3.07 3.22 -2.39 -0.01 3.06 16 20 C -0.12 -3.41 6.44 32.21 0.21 -3.21 16 21 C -0.12 -3.39 6.32 32.21 0.20 -3.18 16 22 C 0.13 4.70 5.29 46.25 0.24 4.95 16 23 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 24 N -0.63 -29.27 2.87 -615.06 -1.76 -31.03 16 25 C -0.21 -12.62 10.96 84.03 0.92 -11.70 16 26 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 27 C -0.05 -3.28 5.50 84.86 0.47 -2.81 16 28 N -0.97 -63.06 13.97 21.65 0.30 -62.76 16 29 Si 0.95 45.51 24.60 68.60 1.69 47.19 16 30 H -0.27 -12.27 6.63 99.48 0.66 -11.61 16 31 H -0.32 -15.91 7.11 99.48 0.71 -15.20 16 32 H -0.24 -9.93 5.07 99.48 0.50 -9.43 16 33 H 0.05 1.31 5.37 -2.39 -0.01 1.30 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.06 1.45 5.77 -2.39 -0.01 1.44 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.02 0.50 6.17 -2.39 -0.01 0.48 16 39 H 0.14 0.79 8.07 -2.39 -0.02 0.77 16 40 H 0.08 1.36 5.91 -2.39 -0.01 1.35 16 41 H 0.21 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.42 4.35 8.10 -92.71 -0.75 3.60 16 45 H 0.12 1.98 7.40 -2.39 -0.02 1.97 16 46 H 0.06 1.93 6.69 -2.38 -0.02 1.92 16 47 H 0.11 1.97 7.80 -2.38 -0.02 1.95 16 48 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.09 2.02 6.47 -2.39 -0.02 2.00 16 50 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -82.08 385.14 1.18 -80.91 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.05 Total: 19.77 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 8.20 Total: 6.26 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -8.63 Total: -136.17 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.04 Total: -17.95 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.69 Total: 47.19 kcal Total: -82.08 1.18 -80.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109400830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.486 kcal (2) G-P(sol) polarization free energy of solvation -82.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds