Wall clock time and date at job start Wed Apr 1 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00137 * 2 1 4 4 C 1.46909 * 110.99459 * 123.95552 * 2 1 3 5 5 H 1.09007 * 109.46395 * 174.51381 * 4 2 1 6 6 C 1.52995 * 109.47289 * 54.51407 * 4 2 1 7 7 N 1.46497 * 109.47259 * 61.97409 * 6 4 2 8 8 C 1.34944 * 126.03831 * 125.33163 * 7 6 4 9 9 C 1.35324 * 107.74721 * 179.97438 * 8 7 6 10 10 C 1.39873 * 107.91507 * 359.97438 * 9 8 7 11 11 N 1.30836 * 108.20445 * 359.74475 * 10 9 8 12 12 C 1.50696 * 109.46737 * 294.50915 * 4 2 1 13 13 O 1.21276 * 120.00410 * 16.74471 * 12 4 2 14 14 N 1.34784 * 119.99899 * 196.73732 * 12 4 2 15 15 C 1.46493 * 120.00065 * 180.02562 * 14 12 4 16 16 H 1.09004 * 110.56133 * 32.10221 * 15 14 12 17 17 C 1.54850 * 110.76640 * 269.10816 * 15 14 12 18 18 C 1.55844 * 103.44419 * 241.44638 * 17 15 14 19 19 H 1.09007 * 116.12252 * 159.15016 * 18 17 15 20 20 C 1.55842 * 105.06674 * 288.17185 * 18 17 15 21 21 C 1.54853 * 103.44483 * 71.82218 * 20 18 17 22 22 C 1.55843 * 103.44470 * 0.02562 * 21 20 18 23 23 H 1.08998 * 115.56440 * 158.80928 * 22 21 20 24 24 N 1.50234 * 101.05237 * 32.93286 * 22 21 20 25 25 C 1.36935 * 130.84185 * 126.29556 * 24 22 21 26 26 H 1.08009 * 119.99812 * 359.68507 * 25 24 22 27 27 C 1.38810 * 120.00513 * 179.68510 * 25 24 22 28 28 N 1.31617 * 119.99744 * 359.97438 * 27 25 24 29 29 Si 1.86795 * 120.00197 * 179.97438 * 27 25 24 30 30 H 1.48499 * 109.47433 * 59.99886 * 29 27 25 31 31 H 1.48503 * 109.47283 * 180.02562 * 29 27 25 32 32 H 1.48509 * 109.47119 * 299.99751 * 29 27 25 33 33 H 1.08992 * 109.47284 * 304.20516 * 1 2 3 34 34 H 1.09002 * 109.47076 * 64.20620 * 1 2 3 35 35 H 1.09006 * 109.47413 * 184.20165 * 1 2 3 36 36 H 1.08995 * 109.46790 * 187.73819 * 3 2 1 37 37 H 1.08997 * 109.46878 * 307.73682 * 3 2 1 38 38 H 1.09003 * 109.47085 * 67.74019 * 3 2 1 39 39 H 1.09004 * 109.46767 * 181.97063 * 6 4 2 40 40 H 1.09001 * 109.47359 * 301.97024 * 6 4 2 41 41 H 1.08000 * 126.12884 * 0.02562 * 8 7 6 42 42 H 1.08000 * 126.04340 * 179.97438 * 9 8 7 43 43 H 1.08007 * 125.89184 * 179.97438 * 10 9 8 44 44 H 0.96997 * 119.99792 * 0.02562 * 14 12 4 45 45 H 1.09004 * 110.62878 * 122.95351 * 17 15 14 46 46 H 1.08998 * 110.62696 * 359.93401 * 17 15 14 47 47 H 1.08997 * 110.63238 * 190.31526 * 20 18 17 48 48 H 1.09010 * 110.62399 * 313.17993 * 20 18 17 49 49 H 1.09002 * 110.62307 * 118.48759 * 21 20 18 50 50 H 1.08996 * 110.63191 * 241.35181 * 21 20 18 51 51 H 0.96997 * 119.99798 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1377 5 1 3.0807 -0.8323 1.0600 6 6 1.3963 -2.1738 1.1255 7 7 1.7955 -2.8638 -0.1037 8 6 2.4144 -4.0607 -0.1771 9 6 2.6073 -4.3457 -1.4858 10 6 2.0880 -3.2869 -2.2379 11 7 1.5959 -2.4007 -1.4106 12 6 1.6250 -0.0736 2.4238 13 8 0.7494 0.7655 2.4305 14 7 2.2669 -0.3869 3.5669 15 6 1.9065 0.2859 4.8173 16 1 0.8460 0.5377 4.8247 17 6 2.7697 1.5542 5.0269 18 6 3.5350 1.2569 6.3516 19 1 4.4461 1.8314 6.5189 20 6 2.4585 1.3618 7.4736 21 6 1.5951 0.0935 7.2640 22 6 2.2679 -0.6053 6.0443 23 1 2.0629 -1.6708 5.9407 24 7 3.7077 -0.2328 6.2571 25 6 4.8320 -1.0107 6.3346 26 1 4.7536 -2.0839 6.2410 27 6 6.0723 -0.4202 6.5336 28 7 6.1679 0.8875 6.6473 29 14 7.6058 -1.4816 6.6401 30 1 7.7697 -2.2429 5.3757 31 1 8.7931 -0.6158 6.8546 32 1 7.4737 -2.4298 7.7754 33 1 -0.3633 0.5777 0.8498 34 1 -0.3633 0.4472 -0.9253 35 1 -0.3634 -1.0249 0.0753 36 1 3.0763 1.3456 -0.1384 37 1 1.5385 1.9359 -0.8127 38 1 1.7623 1.8501 0.9511 39 1 1.7598 -2.7308 1.9891 40 1 0.3092 -2.1066 1.1677 41 1 2.7032 -4.6805 0.6588 42 1 3.0789 -5.2338 -1.8800 43 1 2.0893 -3.2152 -3.3156 44 1 2.9674 -1.0578 3.5615 45 1 2.1374 2.4351 5.1382 46 1 3.4686 1.6839 4.2006 47 1 2.9269 1.3491 8.4577 48 1 1.8584 2.2630 7.3469 49 1 1.6356 -0.5483 8.1441 50 1 0.5645 0.3641 7.0346 51 1 7.0347 1.3002 6.7860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110663221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:16 Heat of formation + Delta-G solvation = 118.344926 kcal Electronic energy + Delta-G solvation = -32325.150466 eV Core-core repulsion = 28263.728258 eV Total energy + Delta-G solvation = -4061.422208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.20455 -40.29158 -39.00009 -36.45897 -34.19840 -33.21003 -32.59463 -30.20945 -29.57316 -29.19936 -28.71894 -27.78630 -27.27423 -24.92528 -24.29427 -22.77277 -21.25343 -21.01578 -20.50151 -19.98827 -19.61286 -18.68959 -17.46944 -17.11440 -16.99217 -16.29363 -15.61113 -15.39304 -14.93024 -14.63256 -14.52767 -14.33090 -14.00880 -13.91672 -13.66670 -13.60556 -13.29366 -12.85446 -12.63952 -12.26541 -12.17421 -11.99497 -11.89366 -11.79421 -11.52707 -11.23918 -11.21225 -11.20999 -11.02525 -10.95291 -10.63429 -10.47137 -10.44670 -10.21611 -10.17805 -9.97568 -9.42429 -9.37690 -9.27962 -9.05392 -8.61857 -8.55648 -7.94699 -7.04080 -5.82757 -3.22504 1.93216 2.38832 2.74512 2.91269 3.30349 3.35144 3.37244 3.45150 3.87227 4.32995 4.39919 4.62056 4.78755 4.87275 4.92890 5.03381 5.08042 5.25518 5.27326 5.44401 5.54278 5.56630 5.60608 5.66448 5.73454 5.77733 5.78840 5.96130 5.96381 6.00618 6.01252 6.04324 6.08071 6.15440 6.24703 6.34151 6.39734 6.51889 6.65593 6.68023 6.73526 6.84658 6.89872 6.99368 7.02667 7.06901 7.22956 7.37553 7.70463 7.79247 7.80999 8.08392 8.40901 8.98317 9.62086 10.42520 11.26057 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003486 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.365151 B = 8030.414145 C = 9518.618934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.493 5.493 3 C 0.013 3.987 4 C 0.053 3.947 5 H 0.108 0.892 6 C 0.144 3.856 7 N -0.364 5.364 8 C 0.044 3.956 9 C -0.275 4.275 10 C 0.024 3.976 11 N -0.246 5.246 12 C 0.485 3.515 13 O -0.541 6.541 14 N -0.700 5.700 15 C 0.127 3.873 16 H 0.079 0.921 17 C -0.141 4.141 18 C 0.154 3.846 19 H 0.153 0.847 20 C -0.139 4.139 21 C -0.128 4.128 22 C 0.126 3.874 23 H 0.087 0.913 24 N -0.590 5.590 25 C -0.219 4.219 26 H 0.078 0.922 27 C -0.007 4.007 28 N -0.919 5.919 29 Si 0.915 3.085 30 H -0.286 1.286 31 H -0.290 1.290 32 H -0.286 1.286 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.170 0.830 42 H 0.142 0.858 43 H 0.177 0.823 44 H 0.402 0.598 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -6.083 -10.919 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.215 5.215 3 C -0.135 4.135 4 C -0.061 4.061 5 H 0.125 0.875 6 C 0.022 3.978 7 N -0.146 5.146 8 C -0.101 4.101 9 C -0.305 4.305 10 C -0.163 4.163 11 N -0.067 5.067 12 C 0.268 3.732 13 O -0.420 6.420 14 N -0.349 5.349 15 C 0.020 3.980 16 H 0.097 0.903 17 C -0.181 4.181 18 C 0.047 3.953 19 H 0.170 0.830 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.017 3.983 23 H 0.105 0.895 24 N -0.311 5.311 25 C -0.346 4.346 26 H 0.095 0.905 27 C -0.204 4.204 28 N -0.566 5.566 29 Si 0.745 3.255 30 H -0.212 1.212 31 H -0.216 1.216 32 H -0.212 1.212 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.187 0.813 42 H 0.160 0.840 43 H 0.194 0.806 44 H 0.237 0.763 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.144 -4.561 -11.053 15.680 hybrid contribution 1.441 -1.294 0.776 2.086 sum -8.703 -5.855 -10.276 14.684 Atomic orbital electron populations 1.22630 0.87152 1.01795 1.02088 1.62485 1.08900 1.13738 1.36344 1.22521 1.00036 0.88976 1.01945 1.22177 1.02041 0.93431 0.88415 0.87456 1.21698 1.01426 0.91346 0.83347 1.48498 1.45645 1.14811 1.05675 1.22581 0.98953 0.89134 0.99435 1.21455 1.13528 1.03316 0.92216 1.23955 0.99450 0.92817 1.00046 1.77719 1.21832 1.20926 0.86191 1.21606 0.82196 0.83749 0.85619 1.90598 1.31897 1.33922 1.85552 1.46270 1.38641 1.41945 1.08077 1.22671 0.98029 0.94185 0.83073 0.90257 1.23422 0.98106 0.95250 1.01363 1.23762 0.96432 0.86070 0.89007 0.83020 1.23067 0.98120 0.95527 1.01153 1.22879 0.97257 0.98037 0.98618 1.23158 0.87223 0.95806 0.92125 0.89488 1.46529 0.99707 1.02300 1.82568 1.18934 0.83576 0.89502 1.42621 0.90470 1.24700 0.97433 0.95814 1.02416 1.69445 1.23361 1.08007 1.55764 0.86156 0.82465 0.79000 0.77846 1.21245 1.21556 1.21235 0.91939 0.92035 0.92279 0.92093 0.91461 0.93346 0.87760 0.88833 0.81274 0.84016 0.80591 0.76301 0.92890 0.92345 0.92616 0.93353 0.92446 0.93054 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.73 60.07 0.52 0.67 16 2 N -0.49 -6.70 3.81 -244.58 -0.93 -7.63 16 3 C 0.01 0.18 9.30 60.06 0.56 0.74 16 4 C 0.05 0.68 2.51 -68.86 -0.17 0.51 16 5 H 0.11 1.43 8.14 -51.92 -0.42 1.01 16 6 C 0.14 1.56 5.53 -4.05 -0.02 1.53 16 7 N -0.36 -4.25 3.68 -61.37 -0.23 -4.48 16 8 C 0.04 0.45 11.45 -17.22 -0.20 0.25 16 9 C -0.28 -2.78 10.80 -40.01 -0.43 -3.21 16 10 C 0.02 0.27 12.03 -17.36 -0.21 0.06 16 11 N -0.25 -3.25 11.16 30.63 0.34 -2.90 16 12 C 0.49 7.22 6.21 -10.98 -0.07 7.16 16 13 O -0.54 -9.45 11.63 5.56 0.06 -9.39 16 14 N -0.70 -10.77 5.08 -51.38 -0.26 -11.03 16 15 C 0.13 2.19 2.80 -65.41 -0.18 2.01 16 16 H 0.08 1.39 7.23 -51.93 -0.38 1.01 16 17 C -0.14 -2.75 6.23 -24.24 -0.15 -2.90 16 18 C 0.15 3.36 4.72 -62.79 -0.30 3.07 16 19 H 0.15 3.86 5.52 -51.92 -0.29 3.57 16 20 C -0.14 -2.65 6.44 -24.24 -0.16 -2.81 16 21 C -0.13 -2.21 6.44 -24.24 -0.16 -2.36 16 22 C 0.13 2.28 5.06 -62.78 -0.32 1.96 16 23 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 24 N -0.59 -13.25 2.99 -145.77 -0.44 -13.69 16 25 C -0.22 -5.45 10.59 -15.06 -0.16 -5.61 16 26 H 0.08 1.84 7.83 -52.48 -0.41 1.43 16 27 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 28 N -0.92 -25.01 10.47 55.49 0.58 -24.43 16 29 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 30 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 31 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 32 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 33 H 0.06 0.93 5.53 -51.93 -0.29 0.64 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.75 5.72 -51.93 -0.30 0.46 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.05 0.76 5.77 -51.93 -0.30 0.46 16 39 H 0.10 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.09 1.02 6.04 -51.93 -0.31 0.71 16 41 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.18 1.47 8.06 -52.48 -0.42 1.04 16 44 H 0.40 6.00 8.66 -40.82 -0.35 5.65 16 45 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 46 H 0.06 1.24 7.98 -51.93 -0.41 0.83 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.83 7.82 -51.92 -0.41 0.42 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 51 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -29.84 395.26 -9.50 -39.35 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -8.04 Total: 11.74 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.53 Total: 0.77 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.93 Total: -64.16 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.06 Total: -9.39 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.84 -9.50 -39.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110663221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.691 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds