Wall clock time and date at job start Wed Apr 1 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00137 * 2 1 4 4 C 1.46909 * 110.99459 * 123.95552 * 2 1 3 5 5 H 1.09007 * 109.46395 * 174.51381 * 4 2 1 6 6 C 1.52995 * 109.47289 * 54.51407 * 4 2 1 7 7 N 1.46497 * 109.47259 * 61.97409 * 6 4 2 8 8 C 1.34944 * 126.03831 * 125.33163 * 7 6 4 9 9 C 1.35324 * 107.74721 * 179.97438 * 8 7 6 10 10 C 1.39873 * 107.91507 * 359.97438 * 9 8 7 11 11 N 1.30836 * 108.20445 * 359.74475 * 10 9 8 12 12 C 1.50696 * 109.46737 * 294.50915 * 4 2 1 13 13 O 1.21276 * 120.00410 * 16.74471 * 12 4 2 14 14 N 1.34784 * 119.99899 * 196.73732 * 12 4 2 15 15 C 1.46493 * 120.00065 * 180.02562 * 14 12 4 16 16 H 1.09004 * 110.56133 * 32.10221 * 15 14 12 17 17 C 1.54850 * 110.76640 * 269.10816 * 15 14 12 18 18 C 1.55844 * 103.44419 * 241.44638 * 17 15 14 19 19 H 1.09007 * 116.12252 * 159.15016 * 18 17 15 20 20 C 1.55842 * 105.06674 * 288.17185 * 18 17 15 21 21 C 1.54853 * 103.44483 * 71.82218 * 20 18 17 22 22 C 1.55843 * 103.44470 * 0.02562 * 21 20 18 23 23 H 1.08998 * 115.56440 * 158.80928 * 22 21 20 24 24 N 1.50234 * 101.05237 * 32.93286 * 22 21 20 25 25 C 1.36935 * 130.84185 * 126.29556 * 24 22 21 26 26 H 1.08009 * 119.99812 * 359.68507 * 25 24 22 27 27 C 1.38810 * 120.00513 * 179.68510 * 25 24 22 28 28 N 1.31617 * 119.99744 * 359.97438 * 27 25 24 29 29 Si 1.86795 * 120.00197 * 179.97438 * 27 25 24 30 30 H 1.48499 * 109.47433 * 59.99886 * 29 27 25 31 31 H 1.48503 * 109.47283 * 180.02562 * 29 27 25 32 32 H 1.48509 * 109.47119 * 299.99751 * 29 27 25 33 33 H 1.08992 * 109.47284 * 304.20516 * 1 2 3 34 34 H 1.09002 * 109.47076 * 64.20620 * 1 2 3 35 35 H 1.09006 * 109.47413 * 184.20165 * 1 2 3 36 36 H 1.08995 * 109.46790 * 187.73819 * 3 2 1 37 37 H 1.08997 * 109.46878 * 307.73682 * 3 2 1 38 38 H 1.09003 * 109.47085 * 67.74019 * 3 2 1 39 39 H 1.09004 * 109.46767 * 181.97063 * 6 4 2 40 40 H 1.09001 * 109.47359 * 301.97024 * 6 4 2 41 41 H 1.08000 * 126.12884 * 0.02562 * 8 7 6 42 42 H 1.08000 * 126.04340 * 179.97438 * 9 8 7 43 43 H 1.08007 * 125.89184 * 179.97438 * 10 9 8 44 44 H 0.96997 * 119.99792 * 0.02562 * 14 12 4 45 45 H 1.09004 * 110.62878 * 122.95351 * 17 15 14 46 46 H 1.08998 * 110.62696 * 359.93401 * 17 15 14 47 47 H 1.08997 * 110.63238 * 190.31526 * 20 18 17 48 48 H 1.09010 * 110.62399 * 313.17993 * 20 18 17 49 49 H 1.09002 * 110.62307 * 118.48759 * 21 20 18 50 50 H 1.08996 * 110.63191 * 241.35181 * 21 20 18 51 51 H 0.96997 * 119.99798 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1377 5 1 3.0807 -0.8323 1.0600 6 6 1.3963 -2.1738 1.1255 7 7 1.7955 -2.8638 -0.1037 8 6 2.4144 -4.0607 -0.1771 9 6 2.6073 -4.3457 -1.4858 10 6 2.0880 -3.2869 -2.2379 11 7 1.5959 -2.4007 -1.4106 12 6 1.6250 -0.0736 2.4238 13 8 0.7494 0.7655 2.4305 14 7 2.2669 -0.3869 3.5669 15 6 1.9065 0.2859 4.8173 16 1 0.8460 0.5377 4.8247 17 6 2.7697 1.5542 5.0269 18 6 3.5350 1.2569 6.3516 19 1 4.4461 1.8314 6.5189 20 6 2.4585 1.3618 7.4736 21 6 1.5951 0.0935 7.2640 22 6 2.2679 -0.6053 6.0443 23 1 2.0629 -1.6708 5.9407 24 7 3.7077 -0.2328 6.2571 25 6 4.8320 -1.0107 6.3346 26 1 4.7536 -2.0839 6.2410 27 6 6.0723 -0.4202 6.5336 28 7 6.1679 0.8875 6.6473 29 14 7.6058 -1.4816 6.6401 30 1 7.7697 -2.2429 5.3757 31 1 8.7931 -0.6158 6.8546 32 1 7.4737 -2.4298 7.7754 33 1 -0.3633 0.5777 0.8498 34 1 -0.3633 0.4472 -0.9253 35 1 -0.3634 -1.0249 0.0753 36 1 3.0763 1.3456 -0.1384 37 1 1.5385 1.9359 -0.8127 38 1 1.7623 1.8501 0.9511 39 1 1.7598 -2.7308 1.9891 40 1 0.3092 -2.1066 1.1677 41 1 2.7032 -4.6805 0.6588 42 1 3.0789 -5.2338 -1.8800 43 1 2.0893 -3.2152 -3.3156 44 1 2.9674 -1.0578 3.5615 45 1 2.1374 2.4351 5.1382 46 1 3.4686 1.6839 4.2006 47 1 2.9269 1.3491 8.4577 48 1 1.8584 2.2630 7.3469 49 1 1.6356 -0.5483 8.1441 50 1 0.5645 0.3641 7.0346 51 1 7.0347 1.3002 6.7860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110663221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:14 Heat of formation + Delta-G solvation = 99.768775 kcal Electronic energy + Delta-G solvation = -32325.955989 eV Core-core repulsion = 28263.728258 eV Total energy + Delta-G solvation = -4062.227730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.09889 -41.47337 -40.43427 -37.61825 -35.48033 -34.52773 -34.07230 -31.14444 -30.97362 -30.64874 -30.10490 -29.02000 -28.47431 -26.15723 -25.82603 -23.98945 -22.48383 -21.79404 -21.54033 -21.52584 -20.89740 -20.18790 -18.84284 -18.49505 -17.98167 -17.47059 -16.83237 -16.67162 -16.42746 -15.97544 -15.81004 -15.53056 -15.36068 -15.09695 -14.80913 -14.68626 -14.37563 -13.92238 -13.77313 -13.62599 -13.50893 -13.17782 -13.13258 -12.92118 -12.89942 -12.79385 -12.76359 -12.58035 -12.52562 -12.22362 -12.12205 -11.99502 -11.90068 -11.71779 -11.46399 -11.25912 -11.04838 -10.94156 -10.81458 -10.22119 -9.96830 -9.36723 -9.08508 -8.86580 -7.75071 -5.14870 1.12488 1.43945 1.50345 1.51618 1.57370 1.71096 2.14127 2.25316 2.51129 2.85416 3.38490 3.44524 3.48235 3.67720 3.77189 4.00489 4.01395 4.09068 4.16793 4.19949 4.26953 4.36470 4.44711 4.47351 4.49368 4.56747 4.61098 4.63260 4.67069 4.83037 4.84429 4.88161 4.91988 4.94221 5.04661 5.06748 5.12330 5.15940 5.20951 5.29291 5.38079 5.52522 5.59734 5.68881 5.84687 5.89910 5.90855 5.98819 6.25241 6.27319 6.56700 6.99432 7.05978 7.18998 7.73983 8.59204 9.32092 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003486 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.365151 B = 8030.414145 C = 9518.618934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.495 5.495 3 C 0.018 3.982 4 C 0.061 3.939 5 H 0.103 0.897 6 C 0.148 3.852 7 N -0.373 5.373 8 C 0.042 3.958 9 C -0.284 4.284 10 C 0.017 3.983 11 N -0.286 5.286 12 C 0.491 3.509 13 O -0.564 6.564 14 N -0.698 5.698 15 C 0.141 3.859 16 H 0.087 0.913 17 C -0.131 4.131 18 C 0.139 3.861 19 H 0.113 0.887 20 C -0.133 4.133 21 C -0.120 4.120 22 C 0.129 3.871 23 H 0.108 0.892 24 N -0.609 5.609 25 C -0.213 4.213 26 H 0.089 0.911 27 C -0.066 4.066 28 N -0.949 5.949 29 Si 0.971 3.029 30 H -0.277 1.277 31 H -0.304 1.304 32 H -0.282 1.282 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.026 0.974 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.200 0.800 42 H 0.162 0.838 43 H 0.196 0.804 44 H 0.406 0.594 45 H 0.061 0.939 46 H 0.031 0.969 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 -8.385 -11.535 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.217 5.217 3 C -0.130 4.130 4 C -0.053 4.053 5 H 0.121 0.879 6 C 0.025 3.975 7 N -0.156 5.156 8 C -0.103 4.103 9 C -0.313 4.313 10 C -0.169 4.169 11 N -0.107 5.107 12 C 0.276 3.724 13 O -0.444 6.444 14 N -0.347 5.347 15 C 0.034 3.966 16 H 0.105 0.895 17 C -0.172 4.172 18 C 0.032 3.968 19 H 0.130 0.870 20 C -0.173 4.173 21 C -0.160 4.160 22 C 0.022 3.978 23 H 0.126 0.874 24 N -0.330 5.330 25 C -0.342 4.342 26 H 0.107 0.893 27 C -0.259 4.259 28 N -0.599 5.599 29 Si 0.801 3.199 30 H -0.203 1.203 31 H -0.231 1.231 32 H -0.208 1.208 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.149 0.851 40 H 0.111 0.889 41 H 0.216 0.784 42 H 0.179 0.821 43 H 0.212 0.788 44 H 0.242 0.758 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.099 0.901 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.480 -6.895 -11.687 17.774 hybrid contribution 1.811 -0.568 0.915 2.107 sum -9.669 -7.463 -10.772 16.285 Atomic orbital electron populations 1.22520 0.86794 1.01816 1.01508 1.62508 1.09154 1.13423 1.36570 1.22462 1.00144 0.89252 1.01121 1.22152 1.01852 0.94485 0.86766 0.87879 1.21729 1.01304 0.90216 0.84205 1.48545 1.46230 1.15434 1.05351 1.23148 0.97875 0.88684 1.00548 1.21789 1.13455 1.03753 0.92290 1.24416 0.98726 0.92758 1.01050 1.77656 1.23488 1.22413 0.87147 1.21939 0.81402 0.83169 0.85910 1.90602 1.32999 1.34926 1.85903 1.46194 1.38851 1.41927 1.07732 1.22420 0.97690 0.92854 0.83611 0.89473 1.23273 0.97752 0.97034 0.99105 1.23573 0.96116 0.85846 0.91233 0.86968 1.22967 0.97707 0.97683 0.98913 1.22840 0.98228 0.96703 0.98188 1.23375 0.84603 0.97195 0.92600 0.87412 1.46708 1.01069 1.02542 1.82725 1.19326 0.84376 0.90300 1.40153 0.89339 1.25401 1.00025 0.96673 1.03783 1.69715 1.22822 1.09384 1.57941 0.85249 0.79199 0.77409 0.78030 1.20328 1.23124 1.20826 0.93590 0.91635 0.91738 0.92112 0.90418 0.95554 0.85125 0.88940 0.78357 0.82067 0.78753 0.75844 0.92005 0.94998 0.94509 0.91400 0.92228 0.90098 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 8.73 127.69 1.11 1.66 16 2 N -0.49 -13.02 3.81 -927.72 -3.53 -16.55 16 3 C 0.02 0.50 9.30 127.69 1.19 1.69 16 4 C 0.06 1.49 2.51 44.16 0.11 1.60 16 5 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 6 C 0.15 2.85 5.53 86.38 0.48 3.33 16 7 N -0.37 -7.91 3.68 -348.07 -1.28 -9.19 16 8 C 0.04 0.73 11.45 83.54 0.96 1.69 16 9 C -0.28 -5.01 10.80 21.99 0.24 -4.77 16 10 C 0.02 0.35 12.03 85.24 1.02 1.38 16 11 N -0.29 -7.12 11.16 -57.02 -0.64 -7.76 16 12 C 0.49 14.01 6.21 87.65 0.54 14.55 16 13 O -0.56 -19.19 11.63 -3.02 -0.04 -19.23 16 14 N -0.70 -20.30 5.08 -434.84 -2.21 -22.51 16 15 C 0.14 4.61 2.80 46.63 0.13 4.74 16 16 H 0.09 2.79 7.23 -2.39 -0.02 2.78 16 17 C -0.13 -5.09 6.23 32.21 0.20 -4.89 16 18 C 0.14 6.14 4.72 46.22 0.22 6.35 16 19 H 0.11 5.97 5.52 -2.38 -0.01 5.96 16 20 C -0.13 -4.96 6.44 32.21 0.21 -4.75 16 21 C -0.12 -3.80 6.44 32.21 0.21 -3.60 16 22 C 0.13 4.37 5.06 46.25 0.23 4.60 16 23 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 24 N -0.61 -26.91 2.99 -615.10 -1.84 -28.75 16 25 C -0.21 -10.48 10.59 84.03 0.89 -9.59 16 26 H 0.09 4.06 7.83 -2.91 -0.02 4.03 16 27 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 28 N -0.95 -53.49 10.47 21.65 0.23 -53.27 16 29 Si 0.97 42.97 29.55 68.60 2.03 45.00 16 30 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 31 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 32 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 33 H 0.05 1.34 5.53 -2.39 -0.01 1.33 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.56 5.72 -2.38 -0.01 1.55 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 38 H 0.03 0.83 5.77 -2.39 -0.01 0.82 16 39 H 0.13 1.79 8.07 -2.38 -0.02 1.77 16 40 H 0.09 1.82 6.04 -2.39 -0.01 1.80 16 41 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.41 11.33 8.66 -92.71 -0.80 10.53 16 45 H 0.06 2.25 7.82 -2.39 -0.02 2.23 16 46 H 0.03 1.38 7.98 -2.39 -0.02 1.36 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 2.22 7.82 -2.38 -0.02 2.20 16 49 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16 51 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -65.55 395.26 1.07 -64.48 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.14 Total: 36.78 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 8.21 Total: 11.00 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -9.27 Total: -138.03 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.04 Total: -19.23 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.55 1.07 -64.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110663221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.252 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds