Wall clock time and date at job start Wed Apr 1 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00569 * 2 1 4 4 N 1.46892 * 109.47300 * 123.00388 * 3 2 1 5 5 C 1.46898 * 111.00114 * 63.22559 * 4 3 2 6 6 C 1.50699 * 109.46924 * 66.04606 * 5 4 3 7 7 H 1.07997 * 120.00133 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99752 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99758 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00160 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47378 * 89.99621 * 10 8 6 12 12 H 1.48500 * 109.46872 * 210.00014 * 10 8 6 13 13 H 1.48498 * 109.47115 * 329.99768 * 10 8 6 14 14 C 1.46898 * 110.99988 * 299.27103 * 4 3 2 15 15 C 1.50707 * 109.47333 * 288.00877 * 14 4 3 16 16 C 1.38269 * 119.91587 * 92.43991 * 15 14 4 17 17 C 1.38155 * 120.10612 * 180.02562 * 16 15 14 18 18 C 1.38831 * 119.95016 * 359.97438 * 17 16 15 19 19 N 1.39846 * 120.08044 * 180.02562 * 18 17 16 20 20 C 1.46952 * 110.99927 * 63.79392 * 19 18 17 21 21 C 1.53059 * 109.36607 * 176.81409 * 20 19 18 22 22 N 1.46955 * 109.36281 * 58.40268 * 21 20 19 23 23 C 1.46902 * 111.00006 * 176.81415 * 22 21 20 24 24 C 1.46958 * 110.88221 * 300.68380 * 22 21 20 25 25 C 1.46956 * 110.99902 * 300.00194 * 19 18 17 26 26 C 1.39072 * 119.84049 * 0.27676 * 18 17 16 27 27 F 1.35104 * 120.05500 * 179.70529 * 26 18 17 28 28 C 1.38286 * 119.89007 * 359.46921 * 26 18 17 29 29 H 1.07993 * 120.00077 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99502 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00002 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46562 * 3.00396 * 3 2 1 33 33 H 1.08997 * 109.47352 * 243.00853 * 3 2 1 34 34 H 1.09003 * 109.47249 * 186.04650 * 5 4 3 35 35 H 1.09000 * 109.47384 * 306.04631 * 5 4 3 36 36 H 0.96998 * 119.99868 * 179.97438 * 9 8 6 37 37 H 1.09006 * 109.47477 * 168.00628 * 14 4 3 38 38 H 1.09006 * 109.47380 * 48.00975 * 14 4 3 39 39 H 1.07995 * 119.94699 * 0.02562 * 16 15 14 40 40 H 1.07998 * 120.02137 * 179.97438 * 17 16 15 41 41 H 1.09001 * 109.49601 * 296.78190 * 20 19 18 42 42 H 1.09006 * 109.49215 * 56.85247 * 20 19 18 43 43 H 1.09006 * 109.48517 * 298.43922 * 21 20 19 44 44 H 1.08995 * 109.48912 * 178.37624 * 21 20 19 45 45 H 1.08999 * 109.47054 * 183.79770 * 23 22 21 46 46 H 1.08997 * 109.46649 * 303.80011 * 23 22 21 47 47 H 1.09004 * 109.46649 * 63.79854 * 23 22 21 48 48 H 1.09004 * 109.48818 * 299.35753 * 24 22 21 49 49 H 1.08994 * 109.50722 * 179.29900 * 24 22 21 50 50 H 1.09006 * 109.48837 * 303.15717 * 25 19 18 51 51 H 1.08998 * 109.49025 * 63.19353 * 25 19 18 52 52 H 1.07998 * 119.97825 * 180.25325 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9618 1.3519 1.1614 5 6 3.9787 0.2947 1.0835 6 6 4.8910 0.5605 -0.0862 7 1 4.7316 1.4283 -0.7090 8 6 5.9299 -0.3035 -0.3604 9 7 6.7257 -0.0718 -1.3815 10 14 6.2061 -1.8040 0.7173 11 1 5.4364 -2.9520 0.1743 12 1 7.6521 -2.1415 0.7348 13 1 5.7493 -1.5114 2.0997 14 6 2.2041 1.2620 2.4167 15 6 1.4609 2.5524 2.6485 16 6 0.1606 2.6897 2.1988 17 6 -0.5242 3.8711 2.4087 18 6 0.0940 4.9220 3.0725 19 7 -0.5968 6.1189 3.2869 20 6 -1.7591 5.9068 4.1606 21 6 -2.4401 7.2500 4.4344 22 7 -2.8468 7.8587 3.1602 23 6 -3.5725 9.1160 3.3853 24 6 -1.6845 8.0707 2.2863 25 6 -1.0036 6.7276 2.0127 26 6 1.4037 4.7835 3.5193 27 9 2.0116 5.8056 4.1606 28 6 2.0812 3.5962 3.3104 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3565 2.1328 0.0539 33 1 2.6492 1.3865 -0.9157 34 1 4.5622 0.2832 2.0041 35 1 3.4900 -0.6706 0.9510 36 1 7.4568 -0.6795 -1.5742 37 1 2.8914 1.0849 3.2441 38 1 1.4922 0.4390 2.3534 39 1 -0.3205 1.8720 1.6827 40 1 -1.5396 3.9769 2.0565 41 1 -2.4642 5.2348 3.6714 42 1 -1.4308 5.4671 5.1025 43 1 -1.7436 7.9127 4.9481 44 1 -3.3193 7.0914 5.0588 45 1 -3.9203 9.5107 2.4307 46 1 -4.4277 8.9304 4.0351 47 1 -2.9078 9.8396 3.8573 48 1 -0.9794 8.7427 2.7757 49 1 -2.0125 8.5107 1.3446 50 1 -0.1243 6.8861 1.3883 51 1 -1.6997 6.0647 1.4988 52 1 3.0969 3.4857 3.6603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117681034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:43 Heat of formation + Delta-G solvation = 34.546093 kcal Electronic energy + Delta-G solvation = -30937.717558 eV Core-core repulsion = 26852.741599 eV Total energy + Delta-G solvation = -4084.975959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.207 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.62295 -40.33782 -38.90980 -37.34423 -35.50265 -33.02162 -32.37293 -31.28184 -30.86585 -30.50296 -28.57494 -27.31158 -25.98445 -24.35448 -23.92129 -23.17995 -22.79126 -21.34752 -20.84490 -19.90656 -18.96397 -17.49814 -16.98817 -16.51273 -16.47068 -15.77654 -15.45532 -15.39049 -15.24044 -15.09396 -14.94996 -14.82198 -14.37249 -14.11842 -13.97036 -13.86560 -13.82084 -13.07507 -13.00109 -12.87029 -12.52620 -12.40620 -12.38408 -11.93880 -11.83364 -11.74611 -11.63069 -11.60501 -11.28938 -11.19870 -11.01282 -10.97044 -10.84337 -10.70362 -10.21325 -9.88038 -9.44022 -9.02346 -8.85616 -8.79296 -8.64663 -8.61501 -8.44659 -7.46836 -6.08256 -4.05746 1.13357 1.27547 2.57248 3.24398 3.33219 3.33840 3.45813 3.55278 3.57536 4.34505 4.38226 4.51025 4.66679 4.78652 4.81293 4.82811 4.97431 5.00637 5.03214 5.11453 5.17873 5.20590 5.24185 5.28593 5.31305 5.40006 5.45011 5.48178 5.48991 5.54432 5.57780 5.64369 5.69894 5.75674 5.90747 5.98552 6.04355 6.20307 6.24471 6.27573 6.50927 6.53546 6.58882 6.65041 6.73297 6.74782 6.77035 6.86805 6.96066 7.07361 7.23133 7.55103 7.80422 7.95184 8.60449 9.00407 9.52874 11.04791 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002326 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.435875 B =12035.149287 C =12467.314197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.082 3.918 4 N -0.512 5.512 5 C 0.159 3.841 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.081 3.919 15 C -0.029 4.029 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.039 3.961 19 N -0.498 5.498 20 C 0.063 3.937 21 C 0.057 3.943 22 N -0.546 5.546 23 C 0.025 3.975 24 C 0.057 3.943 25 C 0.061 3.939 26 C 0.124 3.876 27 F -0.132 7.132 28 C -0.130 4.130 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.029 0.971 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.026 0.974 48 H 0.045 0.955 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.049 0.951 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.009 12.358 10.749 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.180 4.180 3 C -0.046 4.046 4 N -0.234 5.234 5 C 0.033 3.967 6 C -0.546 4.546 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.538 5.538 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.047 4.047 15 C -0.030 4.030 16 C -0.139 4.139 17 C -0.140 4.140 18 C -0.056 4.056 19 N -0.220 5.220 20 C -0.064 4.064 21 C -0.071 4.071 22 N -0.271 5.271 23 C -0.123 4.123 24 C -0.071 4.071 25 C -0.065 4.065 26 C 0.103 3.897 27 F -0.111 7.111 28 C -0.150 4.150 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.047 0.953 35 H 0.008 0.992 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.063 0.937 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.067 0.933 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.550 12.815 10.685 26.471 hybrid contribution -0.012 -1.498 0.533 1.590 sum -20.562 11.317 11.218 26.014 Atomic orbital electron populations 1.23724 0.95932 1.00906 1.04587 1.23898 0.96271 1.01435 0.96408 1.21386 0.94472 0.92456 0.96271 1.62262 1.12549 1.49470 0.99085 1.20262 0.90025 0.87877 0.98500 1.20992 1.11289 1.11066 1.11282 0.90087 1.24888 0.95722 0.97635 0.95026 1.69887 1.17871 1.37800 1.28195 0.86896 0.77633 0.83726 0.81681 1.20394 1.21145 1.19175 1.21147 0.96377 0.92178 0.95033 1.19785 0.93226 0.95694 0.94291 1.21141 0.94566 0.97771 1.00460 1.21389 1.00040 0.93333 0.99231 1.18583 0.93042 0.91089 1.02862 1.59664 1.24516 1.22628 1.15193 1.22223 0.90333 0.96583 0.97281 1.22184 0.98821 0.95333 0.90797 1.62172 1.24567 1.25720 1.14648 1.22343 0.98068 0.90019 1.01846 1.22188 0.90954 0.96561 0.97421 1.22242 0.99268 0.95007 0.90015 1.17509 0.90217 0.85322 0.96615 1.91480 1.82759 1.57832 1.78988 1.21041 1.00893 0.91523 1.01528 0.89287 0.89013 0.87194 0.91720 0.88373 0.95341 0.99241 0.92640 0.90238 0.93701 0.85316 0.85731 0.93368 0.90077 0.93763 0.90095 0.91271 0.91355 0.95518 0.93718 0.89983 0.89811 0.93296 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.84 13.42 29.01 0.39 -2.45 16 2 C -0.16 -2.61 7.43 -36.02 -0.27 -2.88 16 3 C 0.08 1.48 5.39 -4.98 -0.03 1.45 16 4 N -0.51 -9.99 4.65 -238.96 -1.11 -11.10 16 5 C 0.16 3.64 3.62 -4.98 -0.02 3.62 16 6 C -0.51 -13.88 9.02 -34.44 -0.31 -14.19 16 7 H 0.08 2.43 7.36 -52.49 -0.39 2.04 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 10 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.08 1.29 4.97 -4.97 -0.02 1.26 16 15 C -0.03 -0.42 4.99 -104.59 -0.52 -0.94 16 16 C -0.12 -1.52 8.25 -39.60 -0.33 -1.84 16 17 C -0.12 -1.40 8.64 -39.39 -0.34 -1.74 16 18 C 0.04 0.49 4.73 -83.67 -0.40 0.10 16 19 N -0.50 -5.68 4.52 -170.87 -0.77 -6.45 16 20 C 0.06 0.60 5.36 -3.77 -0.02 0.58 16 21 C 0.06 0.48 5.62 -3.76 -0.02 0.45 16 22 N -0.55 -4.65 4.97 -242.75 -1.21 -5.85 16 23 C 0.03 0.17 9.60 60.07 0.58 0.74 16 24 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 25 C 0.06 0.62 5.31 -3.77 -0.02 0.60 16 26 C 0.12 1.76 7.31 -39.25 -0.29 1.47 16 27 F -0.13 -2.01 17.08 2.25 0.04 -1.97 16 28 C -0.13 -1.88 9.68 -39.55 -0.38 -2.27 16 29 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.09 1.10 6.54 -52.49 -0.34 0.75 16 31 H 0.11 1.96 6.81 -52.48 -0.36 1.61 16 32 H 0.06 1.06 6.08 -51.93 -0.32 0.74 16 33 H 0.10 2.04 6.78 -51.93 -0.35 1.69 16 34 H 0.03 0.67 6.92 -51.93 -0.36 0.31 16 35 H -0.01 -0.23 5.74 -51.93 -0.30 -0.52 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 38 H 0.04 0.68 6.66 -51.93 -0.35 0.34 16 39 H 0.13 1.51 5.69 -52.49 -0.30 1.21 16 40 H 0.12 1.25 7.06 -52.49 -0.37 0.88 16 41 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 42 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 47 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 51 H 0.05 0.49 7.24 -51.93 -0.38 0.12 16 52 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -29.77 403.59 -11.39 -41.16 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.41 Total: 1.81 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.12 Total: -13.70 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -2.31 Total: -49.67 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.77 -11.39 -41.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117681034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds