Wall clock time and date at job start Wed Apr 1 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00569 * 2 1 4 4 N 1.46892 * 109.47300 * 123.00388 * 3 2 1 5 5 C 1.46898 * 111.00114 * 63.22559 * 4 3 2 6 6 C 1.50699 * 109.46924 * 66.04606 * 5 4 3 7 7 H 1.07997 * 120.00133 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99752 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99758 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00160 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47378 * 89.99621 * 10 8 6 12 12 H 1.48500 * 109.46872 * 210.00014 * 10 8 6 13 13 H 1.48498 * 109.47115 * 329.99768 * 10 8 6 14 14 C 1.46898 * 110.99988 * 299.27103 * 4 3 2 15 15 C 1.50707 * 109.47333 * 288.00877 * 14 4 3 16 16 C 1.38269 * 119.91587 * 92.43991 * 15 14 4 17 17 C 1.38155 * 120.10612 * 180.02562 * 16 15 14 18 18 C 1.38831 * 119.95016 * 359.97438 * 17 16 15 19 19 N 1.39846 * 120.08044 * 180.02562 * 18 17 16 20 20 C 1.46952 * 110.99927 * 63.79392 * 19 18 17 21 21 C 1.53059 * 109.36607 * 176.81409 * 20 19 18 22 22 N 1.46955 * 109.36281 * 58.40268 * 21 20 19 23 23 C 1.46902 * 111.00006 * 176.81415 * 22 21 20 24 24 C 1.46958 * 110.88221 * 300.68380 * 22 21 20 25 25 C 1.46956 * 110.99902 * 300.00194 * 19 18 17 26 26 C 1.39072 * 119.84049 * 0.27676 * 18 17 16 27 27 F 1.35104 * 120.05500 * 179.70529 * 26 18 17 28 28 C 1.38286 * 119.89007 * 359.46921 * 26 18 17 29 29 H 1.07993 * 120.00077 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99502 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00002 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46562 * 3.00396 * 3 2 1 33 33 H 1.08997 * 109.47352 * 243.00853 * 3 2 1 34 34 H 1.09003 * 109.47249 * 186.04650 * 5 4 3 35 35 H 1.09000 * 109.47384 * 306.04631 * 5 4 3 36 36 H 0.96998 * 119.99868 * 179.97438 * 9 8 6 37 37 H 1.09006 * 109.47477 * 168.00628 * 14 4 3 38 38 H 1.09006 * 109.47380 * 48.00975 * 14 4 3 39 39 H 1.07995 * 119.94699 * 0.02562 * 16 15 14 40 40 H 1.07998 * 120.02137 * 179.97438 * 17 16 15 41 41 H 1.09001 * 109.49601 * 296.78190 * 20 19 18 42 42 H 1.09006 * 109.49215 * 56.85247 * 20 19 18 43 43 H 1.09006 * 109.48517 * 298.43922 * 21 20 19 44 44 H 1.08995 * 109.48912 * 178.37624 * 21 20 19 45 45 H 1.08999 * 109.47054 * 183.79770 * 23 22 21 46 46 H 1.08997 * 109.46649 * 303.80011 * 23 22 21 47 47 H 1.09004 * 109.46649 * 63.79854 * 23 22 21 48 48 H 1.09004 * 109.48818 * 299.35753 * 24 22 21 49 49 H 1.08994 * 109.50722 * 179.29900 * 24 22 21 50 50 H 1.09006 * 109.48837 * 303.15717 * 25 19 18 51 51 H 1.08998 * 109.49025 * 63.19353 * 25 19 18 52 52 H 1.07998 * 119.97825 * 180.25325 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9618 1.3519 1.1614 5 6 3.9787 0.2947 1.0835 6 6 4.8910 0.5605 -0.0862 7 1 4.7316 1.4283 -0.7090 8 6 5.9299 -0.3035 -0.3604 9 7 6.7257 -0.0718 -1.3815 10 14 6.2061 -1.8040 0.7173 11 1 5.4364 -2.9520 0.1743 12 1 7.6521 -2.1415 0.7348 13 1 5.7493 -1.5114 2.0997 14 6 2.2041 1.2620 2.4167 15 6 1.4609 2.5524 2.6485 16 6 0.1606 2.6897 2.1988 17 6 -0.5242 3.8711 2.4087 18 6 0.0940 4.9220 3.0725 19 7 -0.5968 6.1189 3.2869 20 6 -1.7591 5.9068 4.1606 21 6 -2.4401 7.2500 4.4344 22 7 -2.8468 7.8587 3.1602 23 6 -3.5725 9.1160 3.3853 24 6 -1.6845 8.0707 2.2863 25 6 -1.0036 6.7276 2.0127 26 6 1.4037 4.7835 3.5193 27 9 2.0116 5.8056 4.1606 28 6 2.0812 3.5962 3.3104 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3565 2.1328 0.0539 33 1 2.6492 1.3865 -0.9157 34 1 4.5622 0.2832 2.0041 35 1 3.4900 -0.6706 0.9510 36 1 7.4568 -0.6795 -1.5742 37 1 2.8914 1.0849 3.2441 38 1 1.4922 0.4390 2.3534 39 1 -0.3205 1.8720 1.6827 40 1 -1.5396 3.9769 2.0565 41 1 -2.4642 5.2348 3.6714 42 1 -1.4308 5.4671 5.1025 43 1 -1.7436 7.9127 4.9481 44 1 -3.3193 7.0914 5.0588 45 1 -3.9203 9.5107 2.4307 46 1 -4.4277 8.9304 4.0351 47 1 -2.9078 9.8396 3.8573 48 1 -0.9794 8.7427 2.7757 49 1 -2.0125 8.5107 1.3446 50 1 -0.1243 6.8861 1.3883 51 1 -1.6997 6.0647 1.4988 52 1 3.0969 3.4857 3.6603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117681034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:42 Heat of formation + Delta-G solvation = 15.284985 kcal Electronic energy + Delta-G solvation = -30938.552782 eV Core-core repulsion = 26852.741599 eV Total energy + Delta-G solvation = -4085.811184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.207 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.76170 -41.24830 -39.95156 -38.54714 -36.39263 -34.84473 -33.85762 -32.06105 -31.99171 -31.55237 -29.84254 -28.68339 -27.13875 -25.47722 -24.63716 -24.32237 -23.83530 -22.80375 -22.00127 -20.69270 -20.35211 -18.91476 -18.41034 -17.70306 -17.57401 -16.82334 -16.59412 -16.55381 -16.22326 -16.07896 -15.94391 -15.84111 -15.71329 -15.44924 -15.08283 -14.93919 -14.74215 -14.52912 -14.30907 -14.04492 -13.52977 -13.49360 -13.31520 -13.15654 -12.92615 -12.88200 -12.80060 -12.55159 -12.50383 -12.32774 -12.30630 -12.11380 -11.93866 -11.89943 -11.77121 -11.66412 -11.45042 -10.77703 -10.26885 -9.85949 -9.64184 -9.51897 -9.33942 -8.96819 -8.26104 -6.28511 0.08636 0.23346 1.34206 1.36697 1.40030 1.47020 2.35181 2.48219 2.62571 2.94538 3.07570 3.28779 3.46002 3.72529 3.83076 3.89997 4.02511 4.11426 4.15219 4.16287 4.24820 4.27182 4.30311 4.34168 4.43213 4.49767 4.56685 4.60958 4.62243 4.65895 4.75165 4.77902 4.84917 4.86572 4.90248 4.95369 4.99993 5.03043 5.07356 5.11541 5.14791 5.22258 5.27889 5.52561 5.58977 5.69247 5.74171 5.80717 5.83035 6.00501 6.02713 6.04164 6.29807 6.38236 6.66235 6.77778 7.34347 8.90613 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.002326 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.435875 B =12035.149287 C =12467.314197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.195 4.195 3 C 0.091 3.909 4 N -0.531 5.531 5 C 0.171 3.829 6 C -0.509 4.509 7 H 0.036 0.964 8 C 0.007 3.993 9 N -0.949 5.949 10 Si 0.944 3.056 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.247 1.247 14 C 0.086 3.914 15 C -0.041 4.041 16 C -0.112 4.112 17 C -0.110 4.110 18 C 0.047 3.953 19 N -0.513 5.513 20 C 0.063 3.937 21 C 0.060 3.940 22 N -0.552 5.552 23 C 0.025 3.975 24 C 0.061 3.939 25 C 0.062 3.938 26 C 0.103 3.897 27 F -0.143 7.143 28 C -0.139 4.139 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.027 0.973 35 H -0.002 1.002 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.033 0.967 49 H 0.096 0.904 50 H 0.073 0.927 51 H 0.055 0.945 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.575 11.756 12.122 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.215 4.215 3 C -0.037 4.037 4 N -0.253 5.253 5 C 0.044 3.956 6 C -0.547 4.547 7 H 0.054 0.946 8 C -0.190 4.190 9 N -0.591 5.591 10 Si 0.768 3.232 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.171 1.171 14 C -0.041 4.041 15 C -0.042 4.042 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.048 4.048 19 N -0.235 5.235 20 C -0.063 4.063 21 C -0.068 4.068 22 N -0.277 5.277 23 C -0.122 4.122 24 C -0.067 4.067 25 C -0.064 4.064 26 C 0.083 3.917 27 F -0.122 7.122 28 C -0.159 4.159 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.051 0.949 49 H 0.115 0.885 50 H 0.092 0.908 51 H 0.073 0.927 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.152 12.231 12.073 29.643 hybrid contribution 0.966 -1.156 0.060 1.507 sum -23.186 11.076 12.133 28.416 Atomic orbital electron populations 1.24000 0.94576 1.02916 0.99318 1.23545 0.97297 0.99391 1.01249 1.21191 0.94048 0.94495 0.93928 1.62105 1.13566 1.48347 1.01271 1.19970 0.90323 0.89246 0.96048 1.21233 1.12129 1.09356 1.12032 0.94576 1.25825 0.95435 1.01263 0.96516 1.70055 1.18935 1.39539 1.30526 0.85759 0.77540 0.79423 0.80499 1.19252 1.21071 1.17058 1.21112 0.96416 0.93643 0.92952 1.19649 0.94063 0.94916 0.95567 1.21275 0.93698 0.98460 0.99641 1.21584 1.00859 0.92369 0.98216 1.18713 0.92426 0.91841 1.01776 1.59674 1.25587 1.22160 1.16099 1.22267 0.89716 0.97476 0.96825 1.22180 0.99198 0.94430 0.90999 1.62213 1.24212 1.26760 1.14555 1.22395 0.98100 0.89139 1.02592 1.22150 0.90913 0.95509 0.98153 1.22252 0.99048 0.95771 0.89362 1.17705 0.91153 0.85144 0.97693 1.91445 1.83112 1.58261 1.79390 1.21039 1.00795 0.92007 1.02017 0.87104 0.86883 0.89211 0.89855 0.92683 0.95452 0.98474 0.92581 0.90332 0.92313 0.83781 0.83273 0.92742 0.90250 0.94870 0.88247 0.90459 0.90241 0.95710 0.94882 0.88544 0.90846 0.92714 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 13.42 67.78 0.91 -2.97 16 2 C -0.20 -6.08 7.43 25.65 0.19 -5.89 16 3 C 0.09 3.30 5.39 85.56 0.46 3.76 16 4 N -0.53 -20.91 4.65 -909.94 -4.23 -25.14 16 5 C 0.17 7.90 3.62 85.56 0.31 8.21 16 6 C -0.51 -29.04 9.02 25.60 0.23 -28.81 16 7 H 0.04 2.32 7.36 -2.91 -0.02 2.30 16 8 C 0.01 0.38 5.47 84.66 0.46 0.84 16 9 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 10 Si 0.94 43.60 27.47 68.60 1.88 45.48 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 14 C 0.09 2.66 4.97 85.56 0.43 3.08 16 15 C -0.04 -1.13 4.99 -19.84 -0.10 -1.23 16 16 C -0.11 -2.50 8.25 22.26 0.18 -2.31 16 17 C -0.11 -2.25 8.64 22.39 0.19 -2.06 16 18 C 0.05 1.13 4.73 38.20 0.18 1.31 16 19 N -0.51 -10.95 4.52 -694.51 -3.14 -14.09 16 20 C 0.06 1.08 5.36 86.31 0.46 1.54 16 21 C 0.06 0.88 5.62 86.31 0.49 1.36 16 22 N -0.55 -8.11 4.97 -921.92 -4.58 -12.69 16 23 C 0.03 0.27 9.60 127.69 1.23 1.50 16 24 C 0.06 0.96 5.62 86.31 0.49 1.45 16 25 C 0.06 1.16 5.31 86.31 0.46 1.62 16 26 C 0.10 2.92 7.31 22.48 0.16 3.08 16 27 F -0.14 -4.44 17.08 44.97 0.77 -3.67 16 28 C -0.14 -4.01 9.68 22.29 0.22 -3.80 16 29 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.11 2.12 6.54 -2.91 -0.02 2.11 16 31 H 0.09 3.16 6.81 -2.91 -0.02 3.14 16 32 H 0.08 2.63 6.08 -2.39 -0.01 2.62 16 33 H 0.05 2.43 6.78 -2.39 -0.02 2.42 16 34 H 0.03 1.27 6.92 -2.39 -0.02 1.25 16 35 H 0.00 -0.11 5.74 -2.39 -0.01 -0.12 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.08 2.40 7.77 -2.38 -0.02 2.38 16 38 H 0.06 1.65 6.66 -2.38 -0.02 1.64 16 39 H 0.14 2.76 5.69 -2.91 -0.02 2.74 16 40 H 0.15 2.35 7.06 -2.91 -0.02 2.33 16 41 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 42 H 0.08 1.37 8.13 -2.38 -0.02 1.35 16 43 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.10 1.09 8.13 -2.39 -0.02 1.07 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 47 H 0.02 0.28 8.14 -2.38 -0.02 0.26 16 48 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 51 H 0.05 0.95 7.24 -2.39 -0.02 0.94 16 52 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -67.58 403.59 -1.20 -68.78 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.84 Total: 19.80 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 6.95 Total: -19.32 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -11.65 Total: -111.08 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.77 Total: -3.67 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -67.58 -1.20 -68.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117681034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.067 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds