Wall clock time and date at job start Wed Apr 1 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 110.99766 * 2 1 4 4 C 1.46891 * 111.00456 * 123.95759 * 2 1 3 5 5 H 1.09006 * 109.47273 * 298.75382 * 4 2 1 6 6 C 1.50703 * 109.47334 * 58.75493 * 4 2 1 7 7 O 1.21284 * 119.99981 * 28.43439 * 6 4 2 8 8 N 1.34772 * 120.00270 * 208.44116 * 6 4 2 9 9 C 1.46497 * 120.00469 * 174.58825 * 8 6 4 10 10 C 1.50700 * 109.47666 * 179.97438 * 9 8 6 11 11 C 1.40067 * 126.12369 * 259.83145 * 10 9 8 12 12 N 1.31008 * 108.25302 * 180.08233 * 11 10 9 13 13 N 1.39745 * 108.18090 * 0.21244 * 12 11 10 14 14 C 1.34644 * 126.12291 * 79.99784 * 10 9 8 15 15 C 1.51035 * 127.90885 * 359.46045 * 14 10 9 16 16 N 1.47503 * 106.99486 * 169.61950 * 15 14 10 17 17 C 1.36933 * 121.01791 * 222.94982 * 16 15 14 18 18 H 1.08000 * 120.00664 * 148.56253 * 17 16 15 19 19 C 1.38814 * 119.99817 * 328.56560 * 17 16 15 20 20 N 1.31617 * 120.00061 * 1.76820 * 19 17 16 21 21 Si 1.86806 * 119.99966 * 181.77168 * 19 17 16 22 22 H 1.48500 * 109.47295 * 94.99216 * 21 19 17 23 23 H 1.48506 * 109.46855 * 214.99053 * 21 19 17 24 24 H 1.48493 * 109.46997 * 334.98867 * 21 19 17 25 25 C 1.47087 * 117.96975 * 42.97065 * 16 15 14 26 26 C 1.46555 * 127.32569 * 179.49105 * 13 12 11 27 27 C 1.52998 * 109.47572 * 178.75289 * 4 2 1 28 28 C 1.52998 * 117.50236 * 242.95398 * 27 4 2 29 29 C 1.53001 * 117.50361 * 174.29008 * 27 4 2 30 30 H 1.09001 * 109.47419 * 300.46036 * 1 2 3 31 31 H 1.08998 * 109.47692 * 60.46474 * 1 2 3 32 32 H 1.08999 * 109.47313 * 180.46710 * 1 2 3 33 33 H 1.09004 * 109.47407 * 183.95533 * 3 2 1 34 34 H 1.09003 * 109.47684 * 303.95573 * 3 2 1 35 35 H 1.08996 * 109.47004 * 63.95850 * 3 2 1 36 36 H 0.97002 * 120.00112 * 354.58172 * 8 6 4 37 37 H 1.09007 * 109.47161 * 59.99206 * 9 8 6 38 38 H 1.09007 * 109.46990 * 299.99877 * 9 8 6 39 39 H 1.08000 * 125.87621 * 0.14937 * 11 10 9 40 40 H 1.08998 * 109.94804 * 288.99583 * 15 14 10 41 41 H 1.08994 * 109.94640 * 50.25565 * 15 14 10 42 42 H 0.97000 * 120.00173 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.50988 * 176.50370 * 25 16 15 44 44 H 1.08993 * 109.51587 * 56.35376 * 25 16 15 45 45 H 1.08998 * 109.50440 * 281.45163 * 26 13 12 46 46 H 1.08995 * 109.50694 * 41.58889 * 26 13 12 47 47 H 1.09005 * 115.54921 * 28.61660 * 27 4 2 48 48 H 1.09001 * 117.49824 * 359.97438 * 28 27 4 49 49 H 1.08998 * 117.50177 * 145.01940 * 28 27 4 50 50 H 1.09005 * 117.49899 * 214.98339 * 29 27 4 51 51 H 1.09002 * 117.49515 * 359.97438 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 1 1.6642 -0.3071 2.0691 6 6 1.4875 -2.1831 1.0670 7 8 1.2211 -2.6791 -0.0072 8 7 1.3292 -2.8992 2.1977 9 6 0.7249 -4.2325 2.1419 10 6 0.6639 -4.8151 3.5304 11 6 1.5539 -5.7507 4.0731 12 7 1.1743 -6.0150 5.2988 13 7 0.0300 -5.2613 5.5731 14 6 -0.2577 -4.5319 4.4703 15 6 -1.4219 -3.5751 4.3697 16 7 -2.2720 -3.8045 5.5531 17 6 -3.6361 -3.8536 5.4432 18 1 -4.2093 -4.4818 6.1090 19 6 -4.2822 -3.0959 4.4761 20 7 -3.5814 -2.3572 3.6421 21 14 -6.1463 -3.1246 4.3583 22 1 -6.7082 -1.9819 5.1223 23 1 -6.5540 -3.0165 2.9345 24 1 -6.6584 -4.3983 4.9245 25 6 -1.6098 -3.9786 6.8549 26 6 -0.7456 -5.2437 6.8164 27 6 3.5246 -0.7693 1.0861 28 6 4.2226 -2.1192 0.9094 29 6 4.2696 -1.4041 2.2621 30 1 -0.3634 0.5210 0.8858 31 1 -0.3634 0.5066 -0.8941 32 1 -0.3634 -1.0276 0.0084 33 1 3.0827 1.3433 -0.0709 34 1 1.5897 1.9164 -0.8524 35 1 1.7043 1.8723 0.9233 36 1 1.6155 -2.5318 3.0486 37 1 1.3278 -4.8783 1.5034 38 1 -0.2834 -4.1576 1.7343 39 1 2.4070 -6.1795 3.5684 40 1 -1.0593 -2.5472 4.3659 41 1 -1.9891 -3.7738 3.4604 42 1 -4.0329 -1.8274 2.9665 43 1 -2.3633 -4.0760 7.6365 44 1 -0.9798 -3.1135 7.0615 45 1 -1.3870 -6.1240 6.8578 46 1 -0.0666 -5.2467 7.6690 47 1 3.9809 0.0992 0.6111 48 1 3.5925 -3.0051 0.8301 49 1 5.1384 -2.1388 0.3186 50 1 5.2162 -0.9535 2.5605 51 1 3.6703 -1.8191 3.0725 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128376069.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:39 Heat of formation + Delta-G solvation = 113.407453 kcal Electronic energy + Delta-G solvation = -32134.221030 eV Core-core repulsion = 28072.584717 eV Total energy + Delta-G solvation = -4061.636313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.00713 -40.22732 -37.28500 -36.30669 -36.02835 -34.62705 -32.98999 -31.31413 -30.22408 -29.29308 -28.05959 -27.68148 -26.04203 -24.78746 -23.49346 -22.66208 -22.48625 -21.82862 -21.34888 -20.17227 -19.42053 -18.35789 -17.01514 -16.78783 -16.74120 -16.16131 -15.70051 -15.36557 -15.02197 -14.68855 -14.55108 -14.29686 -14.06521 -13.86955 -13.64631 -13.45095 -13.36335 -13.23806 -12.92653 -12.45668 -12.40654 -12.31539 -12.20451 -11.71946 -11.65057 -11.61291 -11.49725 -11.25629 -11.09372 -11.06255 -10.91402 -10.73124 -10.43379 -10.36493 -10.28184 -10.16012 -10.13489 -9.47806 -8.92185 -8.69505 -8.54921 -8.31690 -7.91830 -7.01554 -6.06238 -3.56896 2.42656 2.83678 2.95148 3.01401 3.25418 3.32741 3.34011 3.44982 3.84111 3.97493 4.27141 4.62907 4.75737 4.86849 4.94267 4.98381 5.08895 5.14864 5.16667 5.26890 5.30801 5.37610 5.41221 5.52577 5.55014 5.56633 5.60127 5.62565 5.69933 5.72014 5.76652 5.83142 5.86774 6.00833 6.06351 6.15418 6.18666 6.22016 6.37817 6.40137 6.56349 6.74745 6.90015 6.92783 6.98518 7.09543 7.20109 7.55984 7.61347 7.82888 8.11842 8.23987 8.52585 8.90694 9.49176 10.05437 11.04022 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.003913 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.946593 B = 7153.763100 C = 9279.989770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.521 5.521 3 C 0.022 3.978 4 C 0.097 3.903 5 H 0.062 0.938 6 C 0.522 3.478 7 O -0.523 6.523 8 N -0.721 5.721 9 C 0.212 3.788 10 C -0.289 4.289 11 C 0.056 3.944 12 N -0.319 5.319 13 N -0.359 5.359 14 C 0.119 3.881 15 C 0.231 3.769 16 N -0.597 5.597 17 C -0.266 4.266 18 H 0.071 0.929 19 C 0.015 3.985 20 N -0.905 5.905 21 Si 0.910 3.090 22 H -0.284 1.284 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.129 3.871 26 C 0.113 3.887 27 C -0.144 4.144 28 C -0.171 4.171 29 C -0.179 4.179 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.396 0.604 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.175 0.825 40 H 0.053 0.947 41 H 0.115 0.885 42 H 0.260 0.740 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.101 4.164 -1.473 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.126 4.126 4 C -0.015 4.015 5 H 0.080 0.920 6 C 0.306 3.694 7 O -0.399 6.399 8 N -0.374 5.374 9 C 0.088 3.912 10 C -0.301 4.301 11 C -0.130 4.130 12 N -0.139 5.139 13 N -0.140 5.140 14 C -0.013 4.013 15 C 0.104 3.896 16 N -0.320 5.320 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.185 4.185 20 N -0.548 5.548 21 Si 0.739 3.261 22 H -0.211 1.211 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.001 3.999 26 C -0.010 4.010 27 C -0.163 4.163 28 C -0.208 4.208 29 C -0.216 4.216 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.192 0.808 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.136 0.864 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.083 2.980 -1.609 13.514 hybrid contribution -1.213 0.973 0.457 1.621 sum 11.870 3.953 -1.152 12.564 Atomic orbital electron populations 1.22492 0.86051 1.03622 1.00661 1.61695 1.08650 1.12990 1.41188 1.22482 1.00925 0.88447 1.00734 1.21202 0.93733 0.92831 0.93731 0.92042 1.20145 0.77702 0.87244 0.84269 1.90696 1.49696 1.71166 1.28311 1.46318 1.63032 1.18572 1.09429 1.19288 0.98324 0.81620 0.91955 1.19429 1.02286 1.10058 0.98315 1.23667 0.99500 0.97643 0.92225 1.77164 1.01029 1.18526 1.17188 1.48491 1.20739 1.32524 1.12232 1.22714 0.97606 0.94423 0.86571 1.20043 0.84487 0.91696 0.93363 1.44138 1.02923 1.84677 1.00250 1.19148 0.80927 1.21136 1.18237 0.91114 1.25248 0.98537 0.96069 0.98605 1.69830 1.34443 1.30500 1.20017 0.86155 0.84636 0.77985 0.77295 1.21106 1.21342 1.20253 1.21293 0.95053 0.92631 0.90946 1.22538 0.93322 1.02624 0.82547 1.22200 0.91685 0.98615 1.03757 1.23093 1.02665 0.95802 0.99201 1.23058 1.02173 1.04279 0.92121 0.95389 0.91106 0.90147 0.91055 0.91066 0.95509 0.76967 0.91411 0.90918 0.80825 0.92902 0.86717 0.92971 0.89738 0.94653 0.90690 0.90253 0.86394 0.88159 0.88666 0.88413 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.27 60.06 0.56 0.83 16 2 N -0.52 -6.95 4.61 -244.60 -1.13 -8.08 16 3 C 0.02 0.22 9.28 60.06 0.56 0.78 16 4 C 0.10 1.26 2.23 -68.87 -0.15 1.11 16 5 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 6 C 0.52 8.01 3.53 -10.99 -0.04 7.97 16 7 O -0.52 -9.84 15.46 5.55 0.09 -9.75 16 8 N -0.72 -10.44 5.52 -61.47 -0.34 -10.78 16 9 C 0.21 3.38 5.96 -5.20 -0.03 3.35 16 10 C -0.29 -4.93 5.46 -105.21 -0.57 -5.51 16 11 C 0.06 0.91 11.97 -17.22 -0.21 0.71 16 12 N -0.32 -5.85 12.61 30.69 0.39 -5.46 16 13 N -0.36 -6.81 4.03 -56.93 -0.23 -7.04 16 14 C 0.12 2.31 6.71 -82.17 -0.55 1.76 16 15 C 0.23 5.11 5.05 -4.48 -0.02 5.08 16 16 N -0.60 -13.67 3.01 -172.97 -0.52 -14.20 16 17 C -0.27 -6.68 9.63 -15.06 -0.15 -6.83 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C 0.02 0.39 5.31 -17.43 -0.09 0.29 16 20 N -0.90 -23.93 10.70 55.49 0.59 -23.34 16 21 Si 0.91 20.40 29.55 -169.99 -5.02 15.37 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.13 2.38 6.49 -3.59 -0.02 2.35 16 26 C 0.11 1.91 7.45 -3.88 -0.03 1.88 16 27 C -0.14 -1.55 5.62 -90.62 -0.51 -2.06 16 28 C -0.17 -1.88 9.68 -26.69 -0.26 -2.14 16 29 C -0.18 -1.70 10.13 -26.69 -0.27 -1.97 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.34 6.21 -51.93 -0.32 1.02 16 33 H 0.07 0.62 5.90 -51.93 -0.31 0.32 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.40 5.30 7.63 -40.82 -0.31 4.99 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.12 2.88 6.47 -51.93 -0.34 2.55 16 42 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 43 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.12 1.13 5.86 -51.93 -0.30 0.83 16 48 H 0.10 1.32 6.37 -51.93 -0.33 0.99 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.09 0.93 7.28 -51.93 -0.38 0.55 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -29.85 404.26 -10.04 -39.89 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -8.17 Total: 9.67 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.79 Total: 7.61 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -1.24 Total: -68.89 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.85 -10.04 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128376069.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.294 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds