Wall clock time and date at job start Wed Apr 1 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.47032 * 2 1 4 4 C 1.52992 * 109.47545 * 240.00346 * 2 1 3 5 5 C 1.52999 * 109.47682 * 175.00152 * 4 2 1 6 6 H 1.09004 * 109.46931 * 304.99705 * 5 4 2 7 7 C 1.53003 * 109.47273 * 184.99938 * 5 4 2 8 8 N 1.46492 * 109.47238 * 64.99531 * 5 4 2 9 9 C 1.36943 * 120.00115 * 204.72757 * 8 5 4 10 10 H 1.07996 * 119.99582 * 0.27955 * 9 8 5 11 11 C 1.38807 * 120.00009 * 180.27504 * 9 8 5 12 12 N 1.31617 * 120.00171 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00178 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47261 * 89.99955 * 13 11 9 15 15 H 1.48500 * 109.47230 * 209.99755 * 13 11 9 16 16 H 1.48505 * 109.46878 * 329.99909 * 13 11 9 17 17 N 1.46497 * 109.47261 * 119.99863 * 2 1 3 18 18 C 1.34775 * 120.00180 * 275.00080 * 17 2 1 19 19 O 1.21288 * 120.00051 * 0.02562 * 18 17 2 20 20 C 1.50704 * 120.00190 * 179.97438 * 18 17 2 21 21 C 1.53122 * 109.52439 * 299.87801 * 20 18 17 22 22 C 1.53039 * 109.27198 * 182.50107 * 21 20 18 23 23 N 1.46846 * 109.58039 * 59.08649 * 22 21 20 24 24 C 1.46890 * 111.00350 * 174.19191 * 23 22 21 25 25 C 1.53005 * 109.47013 * 200.99547 * 24 23 22 26 26 F 1.39903 * 109.46542 * 294.19022 * 25 24 23 27 27 F 1.39893 * 109.47289 * 54.19169 * 25 24 23 28 28 C 1.46847 * 111.19333 * 298.28909 * 23 22 21 29 29 C 1.53035 * 109.52841 * 61.73824 * 28 23 22 30 30 H 1.08998 * 109.46685 * 59.99816 * 1 2 3 31 31 H 1.09000 * 109.46894 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46965 * 300.00251 * 1 2 3 33 33 H 1.09001 * 109.47670 * 54.99338 * 4 2 1 34 34 H 1.09007 * 109.47280 * 295.00058 * 4 2 1 35 35 H 1.09004 * 109.46953 * 299.99754 * 7 5 4 36 36 H 1.08995 * 109.47049 * 59.99753 * 7 5 4 37 37 H 1.09001 * 109.47137 * 179.97438 * 7 5 4 38 38 H 0.97002 * 120.00251 * 25.00388 * 8 5 4 39 39 H 0.97001 * 120.00570 * 180.02562 * 12 11 9 40 40 H 0.97001 * 119.99867 * 95.00208 * 17 2 1 41 41 H 1.09001 * 109.51579 * 60.00290 * 20 18 17 42 42 H 1.08999 * 109.50353 * 302.37970 * 21 20 18 43 43 H 1.08995 * 109.49959 * 62.49771 * 21 20 18 44 44 H 1.09001 * 109.41149 * 299.06157 * 22 21 20 45 45 H 1.09004 * 109.45060 * 179.12720 * 22 21 20 46 46 H 1.09004 * 109.47185 * 320.99088 * 24 23 22 47 47 H 1.08998 * 109.47533 * 80.98945 * 24 23 22 48 48 H 1.09005 * 109.47113 * 174.19465 * 25 24 23 49 49 H 1.09001 * 109.46193 * 301.71927 * 28 23 22 50 50 H 1.09003 * 109.45464 * 181.74657 * 28 23 22 51 51 H 1.08998 * 109.50999 * 180.87926 * 29 28 23 52 52 H 1.09000 * 109.50276 * 60.76014 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.8572 0.4359 -1.2677 7 6 4.0646 -1.2249 -2.6240 8 7 4.1537 -1.3341 -0.1824 9 6 5.3968 -0.9891 0.2771 10 1 5.9411 -0.1827 -0.1917 11 6 5.9571 -1.6759 1.3453 12 7 7.1517 -1.3441 1.7873 13 14 5.0159 -3.0712 2.1557 14 1 5.3487 -4.3511 1.4799 15 1 5.3932 -3.1558 3.5894 16 1 3.5573 -2.8160 2.0419 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0182 2.3571 19 8 1.8582 1.1585 2.4117 20 6 2.6490 -0.7287 3.5878 21 6 1.7028 -1.8816 3.9346 22 6 2.1829 -2.5598 5.2198 23 7 2.2116 -1.5792 6.3125 24 6 2.5354 -2.2253 7.5913 25 6 2.0590 -1.3402 8.7449 26 9 2.7939 -0.1498 8.7534 27 9 0.7009 -1.0488 8.5790 28 6 3.1500 -0.4877 6.0218 29 6 2.6981 0.2534 4.7614 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6055 -0.2617 -2.1370 34 1 1.7518 -1.7715 -1.2056 35 1 3.7724 -2.2740 -2.6700 36 1 3.6265 -0.6885 -3.4657 37 1 5.1509 -1.1476 -2.6701 38 1 3.6648 -2.0584 0.2387 39 1 7.5434 -1.8243 2.5335 40 1 2.2491 -1.6317 1.1526 41 1 3.6481 -1.1216 3.3994 42 1 0.6953 -1.4933 4.0835 43 1 1.6977 -2.6057 3.1200 44 1 3.1845 -2.9610 5.0654 45 1 1.5025 -3.3713 5.4780 46 1 2.0368 -3.1930 7.6461 47 1 3.6137 -2.3676 7.6638 48 1 2.2054 -1.8643 9.6894 49 1 4.1472 -0.8986 5.8637 50 1 3.1720 0.2057 6.8625 51 1 3.4033 1.0535 4.5371 52 1 1.7067 0.6762 4.9237 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135289212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:19 Heat of formation + Delta-G solvation = -150.785868 kcal Electronic energy + Delta-G solvation = -33672.606781 eV Core-core repulsion = 29148.824999 eV Total energy + Delta-G solvation = -4523.781781 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.79204 -47.80905 -41.37512 -39.63746 -38.38783 -35.92406 -35.08473 -34.09810 -32.49112 -31.84295 -30.82876 -30.03998 -27.62849 -26.04201 -25.34183 -24.31979 -23.26833 -22.46900 -22.00270 -21.35538 -20.66647 -19.58351 -18.61794 -18.19809 -18.07813 -17.52612 -17.29197 -16.61888 -16.48856 -16.15786 -15.98056 -15.89367 -15.26326 -15.10358 -14.98447 -14.80706 -14.60817 -14.47497 -14.24053 -14.17913 -14.09584 -13.96911 -13.47428 -13.43597 -13.29972 -13.19076 -13.09405 -12.93214 -12.80605 -12.54519 -12.48943 -12.40905 -12.30728 -11.98655 -11.88130 -11.83174 -11.71948 -11.57748 -11.46424 -11.31289 -10.98056 -10.61058 -9.94626 -9.50308 -9.21495 -7.98393 -5.30284 1.19131 1.36328 1.41903 1.73907 2.33976 2.47385 2.61801 3.05630 3.32803 3.44936 3.52614 3.60233 3.63501 3.72391 3.77455 3.82428 4.07027 4.10841 4.12017 4.21410 4.29241 4.32695 4.38895 4.49374 4.52397 4.53405 4.60220 4.63778 4.65569 4.76836 4.79508 4.83976 4.84813 4.89376 4.96469 5.03869 5.05855 5.07613 5.14676 5.22399 5.35101 5.37171 5.58172 5.71182 5.81154 5.86233 5.88594 6.23341 6.61900 7.11049 7.34460 7.85844 8.06764 9.23826 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.003837 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.458202 B = 7296.269968 C = 8515.732707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 H 0.054 0.946 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.028 0.972 7 C -0.156 4.156 8 N -0.738 5.738 9 C -0.215 4.215 10 H 0.043 0.957 11 C -0.068 4.068 12 N -0.989 5.989 13 Si 0.950 3.050 14 H -0.291 1.291 15 H -0.299 1.299 16 H -0.229 1.229 17 N -0.699 5.699 18 C 0.525 3.475 19 O -0.587 6.587 20 C -0.113 4.113 21 C -0.103 4.103 22 C 0.055 3.945 23 N -0.539 5.539 24 C -0.006 4.006 25 C 0.263 3.737 26 F -0.223 7.223 27 F -0.213 7.213 28 C 0.048 3.952 29 C -0.087 4.087 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.363 0.637 39 H 0.253 0.747 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.026 0.974 45 H 0.115 0.885 46 H 0.133 0.867 47 H 0.073 0.927 48 H 0.159 0.841 49 H 0.023 0.977 50 H 0.097 0.903 51 H 0.050 0.950 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.710 -7.439 7.573 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.072 0.928 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.046 0.954 7 C -0.215 4.215 8 N -0.383 5.383 9 C -0.347 4.347 10 H 0.061 0.939 11 C -0.259 4.259 12 N -0.640 5.640 13 Si 0.779 3.221 14 H -0.218 1.218 15 H -0.227 1.227 16 H -0.153 1.153 17 N -0.351 5.351 18 C 0.313 3.687 19 O -0.468 6.468 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.072 4.072 23 N -0.264 5.264 24 C -0.134 4.134 25 C 0.209 3.791 26 F -0.205 7.205 27 F -0.194 7.194 28 C -0.080 4.080 29 C -0.125 4.125 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.197 0.803 39 H 0.061 0.939 40 H 0.237 0.763 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.045 0.955 45 H 0.133 0.867 46 H 0.151 0.849 47 H 0.091 0.909 48 H 0.176 0.824 49 H 0.041 0.959 50 H 0.115 0.885 51 H 0.069 0.931 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.228 -6.253 7.606 19.843 hybrid contribution 1.738 -0.870 0.351 1.975 sum -15.490 -7.123 7.957 18.815 Atomic orbital electron populations 1.22083 0.93444 1.02954 1.02301 1.21006 0.94658 0.96327 0.84361 0.92809 1.22171 0.94084 1.02121 0.97563 1.20489 0.92401 0.94368 0.86974 0.95378 1.22261 1.00006 1.01318 0.97938 1.42721 1.17367 1.40720 1.37537 1.18918 0.92822 1.12416 1.10505 0.93907 1.25483 0.97630 1.02834 0.99943 1.69914 1.18436 1.45619 1.30023 0.85656 0.80163 0.79173 0.77077 1.21830 1.22675 1.15335 1.46156 1.65788 1.13987 1.09147 1.20595 0.76140 0.86639 0.85363 1.90600 1.52705 1.17481 1.86058 1.21458 1.00545 0.98103 0.93361 1.21631 0.98904 0.95639 0.97894 1.22215 1.00400 0.94432 0.90175 1.61933 1.50532 1.11185 1.02705 1.23446 1.02254 0.99113 0.88624 1.22528 0.72602 0.81712 1.02247 1.92877 1.77628 1.52413 1.97547 1.92958 1.34783 1.94437 1.97256 1.22377 0.92705 0.94396 0.98520 1.21239 1.02147 0.96576 0.92534 0.89656 0.90809 0.94339 0.86828 0.89595 0.92366 0.90827 0.95657 0.80266 0.93851 0.76264 0.90875 0.89825 0.89522 0.95549 0.86732 0.84875 0.90909 0.82411 0.95853 0.88464 0.93132 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.48 71.98 0.68 -2.69 16 2 C 0.14 4.09 2.57 44.99 0.12 4.21 16 3 H 0.05 1.93 7.58 -2.38 -0.02 1.91 16 4 C -0.12 -2.98 4.43 30.59 0.14 -2.85 16 5 C 0.17 5.72 2.89 44.99 0.13 5.85 16 6 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 7 C -0.16 -4.80 9.49 71.98 0.68 -4.11 16 8 N -0.74 -31.24 3.65 -322.95 -1.18 -32.42 16 9 C -0.22 -11.87 10.41 84.03 0.87 -10.99 16 10 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 11 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 12 N -0.99 -62.95 13.97 21.65 0.30 -62.64 16 13 Si 0.95 41.84 25.17 68.60 1.73 43.56 16 14 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.23 -7.99 3.62 99.48 0.36 -7.63 16 17 N -0.70 -22.98 3.70 -442.53 -1.64 -24.62 16 18 C 0.53 20.19 7.12 87.66 0.62 20.81 16 19 O -0.59 -26.37 15.64 -3.06 -0.05 -26.42 16 20 C -0.11 -3.97 2.19 -11.46 -0.03 -3.99 16 21 C -0.10 -2.71 5.10 30.65 0.16 -2.55 16 22 C 0.06 1.27 5.42 86.33 0.47 1.74 16 23 N -0.54 -13.11 4.40 -896.37 -3.95 -17.06 16 24 C -0.01 -0.10 5.38 86.31 0.46 0.37 16 25 C 0.26 4.26 5.59 71.98 0.40 4.66 16 26 F -0.22 -5.09 14.68 44.97 0.66 -4.43 16 27 F -0.21 -4.69 17.15 44.97 0.77 -3.91 16 28 C 0.05 1.43 5.23 86.33 0.45 1.88 16 29 C -0.09 -3.04 4.68 30.65 0.14 -2.90 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.36 13.98 3.77 -92.71 -0.35 13.63 16 39 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.40 12.30 4.60 -92.71 -0.43 11.87 16 41 H 0.07 2.95 5.04 -2.39 -0.01 2.94 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.09 2.01 6.81 -2.39 -0.02 2.00 16 44 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.11 1.87 7.92 -2.38 -0.02 1.85 16 46 H 0.13 1.39 7.77 -2.38 -0.02 1.37 16 47 H 0.07 1.18 7.98 -2.39 -0.02 1.16 16 48 H 0.16 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.10 2.85 5.46 -2.39 -0.01 2.84 16 51 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.07 2.56 8.04 -2.39 -0.02 2.55 16 Total: -1.00 -77.73 396.98 2.22 -75.52 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -0.20 Total: 46.43 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.77 Total: 6.00 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -6.46 Total: -136.74 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 1.43 Total: -8.35 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.73 Total: 43.56 kcal Total: -77.73 2.22 -75.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135289212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.269 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds