Wall clock time and date at job start Wed Apr 1 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00058 * 2 1 4 4 H 1.08001 * 119.99982 * 143.43557 * 3 2 1 5 5 C 1.38812 * 120.00232 * 323.44161 * 3 2 1 6 6 N 1.31621 * 120.00221 * 158.59871 * 5 3 2 7 7 Si 1.86803 * 119.99563 * 338.60308 * 5 3 2 8 8 H 1.48497 * 109.47351 * 91.93304 * 7 5 3 9 9 H 1.48506 * 109.46864 * 211.92723 * 7 5 3 10 10 H 1.48495 * 109.47460 * 331.92401 * 7 5 3 11 11 C 1.46499 * 120.00089 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47282 * 266.95338 * 11 2 1 13 13 H 1.08997 * 109.70172 * 299.03222 * 12 11 2 14 14 C 1.53192 * 109.58736 * 59.38520 * 12 11 2 15 15 C 1.53042 * 109.31525 * 174.42474 * 14 12 11 16 16 C 1.53040 * 109.53733 * 298.63599 * 15 14 12 17 17 C 1.52762 * 109.38296 * 61.23639 * 16 15 14 18 18 N 1.46921 * 109.00945 * 305.59037 * 17 16 15 19 19 C 1.34780 * 120.63001 * 233.57919 * 18 17 16 20 20 O 1.21275 * 119.99924 * 184.81796 * 19 18 17 21 21 C 1.50698 * 120.00174 * 4.82509 * 19 18 17 22 22 H 1.09011 * 109.69167 * 40.09351 * 21 19 18 23 23 C 1.53426 * 109.69620 * 160.67982 * 21 19 18 24 24 C 1.53114 * 109.55126 * 169.41602 * 23 21 19 25 25 C 1.53425 * 109.57693 * 289.92499 * 24 23 21 26 26 C 1.50594 * 108.33094 * 49.81332 * 25 24 23 27 27 N 1.32914 * 129.16244 * 163.41861 * 26 25 24 28 28 N 1.29020 * 108.63565 * 180.22745 * 27 26 25 29 29 N 1.29113 * 110.25983 * 359.96703 * 28 27 26 30 30 H 0.96997 * 126.00701 * 179.97438 * 29 28 27 31 31 C 1.34391 * 107.98275 * 359.94576 * 29 28 27 32 32 H 1.09005 * 109.46956 * 268.88504 * 1 2 3 33 33 H 1.09004 * 109.47293 * 28.88828 * 1 2 3 34 34 H 1.09000 * 109.47253 * 148.88795 * 1 2 3 35 35 H 0.96998 * 119.99529 * 179.97438 * 6 5 3 36 36 H 1.09004 * 109.47449 * 146.95127 * 11 2 1 37 37 H 1.09008 * 109.47231 * 26.95455 * 11 2 1 38 38 H 1.08996 * 109.50167 * 294.37639 * 14 12 11 39 39 H 1.09002 * 109.49872 * 54.47556 * 14 12 11 40 40 H 1.08993 * 109.46085 * 58.65348 * 15 14 12 41 41 H 1.08999 * 109.46540 * 178.61912 * 15 14 12 42 42 H 1.08998 * 109.50308 * 181.31696 * 16 15 14 43 43 H 1.08998 * 109.49748 * 301.38031 * 16 15 14 44 44 H 1.09004 * 109.51143 * 185.70485 * 17 16 15 45 45 H 1.09002 * 109.43314 * 65.42849 * 17 16 15 46 46 H 1.09003 * 109.46413 * 289.43949 * 23 21 19 47 47 H 1.09000 * 109.46135 * 49.41135 * 23 21 19 48 48 H 1.08997 * 109.45499 * 49.96042 * 24 23 21 49 49 H 1.09000 * 109.45632 * 169.91417 * 24 23 21 50 50 H 1.08993 * 109.69004 * 169.52440 * 25 24 23 51 51 H 1.08997 * 109.68935 * 290.06829 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0703 1.2779 0.5572 5 6 1.6605 2.2698 -0.7160 6 7 2.0427 3.4904 -0.4053 7 14 0.4597 1.9961 -2.1205 8 1 -0.9309 2.0778 -1.6059 9 1 0.6655 3.0385 -3.1580 10 1 0.6898 0.6546 -2.7143 11 6 2.1975 -1.2687 -0.0006 12 6 2.5189 -1.6727 1.4396 13 1 3.1449 -0.9108 1.9040 14 6 1.2174 -1.8220 2.2338 15 6 1.5357 -2.3597 3.6308 16 6 2.1899 -3.7382 3.5119 17 6 3.4974 -3.6133 2.7319 18 7 3.2258 -2.9607 1.4439 19 6 3.6130 -3.5353 0.2878 20 8 3.4617 -2.9473 -0.7620 21 6 4.2337 -4.9085 0.2997 22 1 3.7121 -5.5411 1.0181 23 6 4.1415 -5.5298 -1.1001 24 6 4.9966 -6.7987 -1.1548 25 6 6.4824 -6.4201 -1.1005 26 6 6.6882 -5.4740 0.0529 27 7 7.8175 -5.1238 0.6601 28 7 7.5367 -4.2906 1.6043 29 7 6.2645 -4.0743 1.6461 30 1 5.8059 -3.4874 2.2675 31 6 5.6874 -4.8048 0.6768 32 1 -0.3633 -0.0200 1.0275 33 1 -0.3634 0.8998 -0.4965 34 1 -0.3634 -0.8798 -0.5310 35 1 1.7011 4.2477 -0.9060 36 1 3.1252 -1.1525 -0.5610 37 1 1.5859 -2.0412 -0.4668 38 1 0.7304 -0.8507 2.3201 39 1 0.5547 -2.5174 1.7187 40 1 2.2181 -1.6764 4.1361 41 1 0.6139 -2.4437 4.2064 42 1 2.3950 -4.1307 4.5078 43 1 1.5177 -4.4156 2.9852 44 1 3.9139 -4.6055 2.5582 45 1 4.2049 -3.0128 3.3038 46 1 3.1036 -5.7817 -1.3180 47 1 4.5045 -4.8155 -1.8391 48 1 4.7533 -7.4373 -0.3056 49 1 4.7924 -7.3343 -2.0819 50 1 7.0845 -7.3164 -0.9523 51 1 6.7716 -5.9332 -2.0318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158405387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:57 Heat of formation + Delta-G solvation = 97.937443 kcal Electronic energy + Delta-G solvation = -32980.952530 eV Core-core repulsion = 28918.645387 eV Total energy + Delta-G solvation = -4062.307143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.75178 -40.69102 -37.99303 -36.75472 -35.85176 -34.26000 -32.85147 -32.18596 -30.99121 -30.43858 -30.35255 -27.30139 -25.88355 -25.14871 -24.45579 -23.60724 -23.06281 -22.35800 -21.12215 -20.60659 -19.79022 -19.12512 -18.43430 -17.26379 -16.75890 -16.16553 -15.98554 -15.64744 -15.26286 -15.02050 -14.63682 -14.50090 -14.27392 -14.12624 -13.87276 -13.78541 -13.51783 -13.32632 -13.13537 -12.85663 -12.48616 -12.45510 -12.25287 -11.90940 -11.82219 -11.63315 -11.57329 -11.46620 -11.34495 -11.14310 -10.97298 -10.81709 -10.68157 -10.60757 -10.55447 -10.53285 -10.23420 -9.91123 -9.67883 -9.32044 -8.85144 -8.53961 -8.47004 -6.79284 -5.96871 -3.38013 1.26605 2.26692 2.38892 2.54444 2.83217 3.32266 3.49835 3.57658 3.92379 4.14194 4.22962 4.36766 4.40627 4.55706 4.59175 4.65488 4.78654 4.83385 4.93457 5.00737 5.04757 5.12559 5.15966 5.20829 5.22200 5.30737 5.41377 5.58572 5.60134 5.63287 5.64770 5.72758 5.73952 5.76712 5.89130 5.90410 5.99109 6.06479 6.13831 6.19836 6.26104 6.36675 6.46277 6.53928 6.63211 6.73878 6.78865 7.16716 7.34856 8.02647 8.15314 8.22626 8.40124 9.02453 9.74365 10.14418 11.19050 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003564 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.594231 B = 7854.579348 C = 8546.757428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.610 5.610 3 C -0.267 4.267 4 H 0.077 0.923 5 C 0.033 3.967 6 N -0.904 5.904 7 Si 0.887 3.113 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.271 1.271 11 C 0.159 3.841 12 C 0.124 3.876 13 H 0.075 0.925 14 C -0.124 4.124 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.092 3.908 18 N -0.608 5.608 19 C 0.509 3.491 20 O -0.500 6.500 21 C -0.034 4.034 22 H 0.111 0.889 23 C -0.103 4.103 24 C -0.118 4.118 25 C -0.036 4.036 26 C -0.005 4.005 27 N -0.258 5.258 28 N -0.082 5.082 29 N -0.380 5.380 30 H 0.446 0.554 31 C -0.006 4.006 32 H 0.015 0.985 33 H 0.045 0.955 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -23.509 6.335 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.335 5.335 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.167 4.167 6 N -0.545 5.545 7 Si 0.718 3.282 8 H -0.215 1.215 9 H -0.232 1.232 10 H -0.195 1.195 11 C 0.032 3.968 12 C 0.020 3.980 13 H 0.093 0.907 14 C -0.162 4.162 15 C -0.159 4.159 16 C -0.168 4.168 17 C -0.032 4.032 18 N -0.343 5.343 19 C 0.294 3.706 20 O -0.373 6.373 21 C -0.057 4.057 22 H 0.129 0.871 23 C -0.141 4.141 24 C -0.156 4.156 25 C -0.075 4.075 26 C -0.145 4.145 27 N -0.124 5.124 28 N -0.061 5.061 29 N -0.101 5.101 30 H 0.294 0.706 31 C -0.142 4.142 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.104 0.896 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.081 -22.715 6.265 23.764 hybrid contribution -2.036 0.302 -0.364 2.090 sum 1.045 -22.413 5.901 23.200 Atomic orbital electron populations 1.21473 0.85340 0.99004 0.98017 1.44298 1.00377 1.02517 1.86299 1.18734 1.08457 0.86871 1.25480 0.90525 1.25428 0.98291 0.95223 0.97730 1.69862 1.46512 0.97767 1.40402 0.86859 0.80170 0.77558 0.83610 1.21540 1.23211 1.19549 1.21506 0.97980 0.86948 0.90328 1.22421 0.92064 0.81476 1.02054 0.90738 1.21982 0.97525 1.02511 0.94199 1.21558 1.00628 0.95633 0.98089 1.21786 0.96288 0.98793 0.99921 1.21805 0.98563 0.97413 0.85415 1.48463 1.57967 1.22991 1.04920 1.20339 0.79096 0.86922 0.84196 1.90835 1.53494 1.62035 1.30966 1.20111 0.88127 0.96176 1.01311 0.87128 1.21537 1.01550 0.97315 0.93686 1.21660 0.93500 0.97267 1.03135 1.20026 0.97075 0.96654 0.93718 1.21718 0.88284 1.03050 1.01439 1.74846 1.24708 1.08929 1.03898 1.78592 0.94232 1.15425 1.17877 1.45002 1.07281 1.32518 1.25330 0.70622 1.21406 0.97161 1.00297 0.95326 0.96744 0.93663 0.95476 0.92777 0.89799 0.93857 0.89232 0.92378 0.91781 0.91815 0.90855 0.91303 0.90385 0.91533 0.89940 0.89268 0.91350 0.89949 0.89553 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 8.67 59.85 0.52 2.84 16 2 N -0.61 -14.54 2.17 -181.11 -0.39 -14.94 16 3 C -0.27 -7.51 9.94 -15.06 -0.15 -7.66 16 4 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 5 C 0.03 0.98 5.32 -17.43 -0.09 0.88 16 6 N -0.90 -27.88 13.97 55.49 0.78 -27.10 16 7 Si 0.89 22.97 25.07 -169.99 -4.26 18.70 16 8 H -0.29 -7.12 6.52 56.52 0.37 -6.75 16 9 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 10 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.16 3.26 3.65 -4.05 -0.01 3.25 16 12 C 0.12 2.00 3.20 -67.60 -0.22 1.78 16 13 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.12 -1.75 4.58 -26.61 -0.12 -1.87 16 15 C -0.12 -1.27 5.89 -26.69 -0.16 -1.43 16 16 C -0.13 -1.03 6.06 -26.83 -0.16 -1.20 16 17 C 0.09 0.77 4.49 -3.93 -0.02 0.75 16 18 N -0.61 -7.55 2.98 -165.49 -0.49 -8.05 16 19 C 0.51 6.82 6.68 -10.98 -0.07 6.74 16 20 O -0.50 -8.85 11.36 5.56 0.06 -8.78 16 21 C -0.03 -0.32 2.03 -92.78 -0.19 -0.51 16 22 H 0.11 0.77 6.80 -51.92 -0.35 0.42 16 23 C -0.10 -0.91 4.89 -26.45 -0.13 -1.04 16 24 C -0.12 -0.76 5.90 -26.45 -0.16 -0.92 16 25 C -0.04 -0.29 6.30 -27.71 -0.17 -0.47 16 26 C 0.00 -0.06 7.11 -83.12 -0.59 -0.65 16 27 N -0.26 -3.65 12.40 33.16 0.41 -3.24 16 28 N -0.08 -1.14 13.40 60.35 0.81 -0.33 16 29 N -0.38 -4.32 6.56 33.39 0.22 -4.10 16 30 H 0.45 4.20 6.18 -190.07 -1.17 3.02 16 31 C -0.01 -0.07 5.91 -82.49 -0.49 -0.55 16 32 H 0.01 0.29 6.51 -51.93 -0.34 -0.05 16 33 H 0.05 1.08 3.01 -51.93 -0.16 0.93 16 34 H 0.03 0.53 7.89 -51.93 -0.41 0.12 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.08 1.97 6.13 -51.93 -0.32 1.65 16 37 H 0.04 0.88 6.99 -51.92 -0.36 0.52 16 38 H 0.09 1.49 6.01 -51.93 -0.31 1.17 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.51 5.02 -51.93 -0.26 0.25 16 45 H 0.07 0.50 7.30 -51.93 -0.38 0.12 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.99 7.49 -51.93 -0.39 0.60 16 48 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -34.51 374.49 -8.13 -42.64 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.69 Total: -0.41 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.21 Total: -0.04 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 1.33 Total: -57.76 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.26 Total: 18.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.51 -8.13 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158405387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.581 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds