Wall clock time and date at job start Wed Apr 1 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00650 * 2 1 4 4 H 1.07995 * 120.00750 * 146.89104 * 3 2 1 5 5 C 1.38817 * 119.99381 * 326.89477 * 3 2 1 6 6 N 1.31622 * 120.00014 * 167.10394 * 5 3 2 7 7 Si 1.86796 * 120.00308 * 347.10253 * 5 3 2 8 8 H 1.48500 * 109.47478 * 90.14536 * 7 5 3 9 9 H 1.48496 * 109.47198 * 210.15182 * 7 5 3 10 10 H 1.48506 * 109.47162 * 330.14920 * 7 5 3 11 11 C 1.46503 * 119.99600 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47258 * 84.83332 * 11 2 1 13 13 H 1.09001 * 109.70115 * 299.38090 * 12 11 2 14 14 C 1.53189 * 109.58457 * 59.73276 * 12 11 2 15 15 C 1.53049 * 109.31327 * 174.42395 * 14 12 11 16 16 C 1.53041 * 109.53377 * 298.63776 * 15 14 12 17 17 C 1.53191 * 109.31674 * 61.36406 * 16 15 14 18 18 N 1.46925 * 108.89206 * 305.29098 * 17 16 15 19 19 C 1.34774 * 120.63362 * 233.68322 * 18 17 16 20 20 O 1.21272 * 120.00123 * 184.75116 * 19 18 17 21 21 C 1.50700 * 119.99680 * 4.74849 * 19 18 17 22 22 H 1.09004 * 109.45827 * 320.93228 * 21 19 18 23 23 C 1.53112 * 109.45716 * 200.96946 * 21 19 18 24 24 C 1.53424 * 109.57376 * 169.90612 * 23 21 19 25 25 C 1.50592 * 108.33895 * 49.82043 * 24 23 21 26 26 N 1.32908 * 129.16921 * 163.48626 * 25 24 23 27 27 N 1.29022 * 108.63947 * 180.14190 * 26 25 24 28 28 N 1.29112 * 110.25542 * 359.96767 * 27 26 25 29 29 H 0.96999 * 126.00514 * 179.91747 * 28 27 26 30 30 C 1.34395 * 107.98456 * 359.94161 * 28 27 26 31 31 C 1.50545 * 129.24940 * 180.23545 * 30 28 27 32 32 H 1.08996 * 109.46977 * 234.59419 * 1 2 3 33 33 H 1.09003 * 109.46596 * 354.59398 * 1 2 3 34 34 H 1.08990 * 109.47005 * 114.59158 * 1 2 3 35 35 H 0.96992 * 120.00164 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47597 * 324.83172 * 11 2 1 37 37 H 1.09008 * 109.46810 * 204.83353 * 11 2 1 38 38 H 1.08999 * 109.50312 * 54.47678 * 14 12 11 39 39 H 1.08999 * 109.52813 * 294.38620 * 14 12 11 40 40 H 1.09000 * 109.46189 * 178.61252 * 15 14 12 41 41 H 1.09004 * 109.45803 * 58.65014 * 15 14 12 42 42 H 1.08996 * 109.49515 * 301.40503 * 16 15 14 43 43 H 1.09002 * 109.52047 * 181.33111 * 16 15 14 44 44 H 1.08999 * 109.58481 * 65.15088 * 17 16 15 45 45 H 1.09000 * 109.58794 * 185.42904 * 17 16 15 46 46 H 1.08996 * 109.44916 * 289.93725 * 23 21 19 47 47 H 1.08998 * 109.45128 * 49.89782 * 23 21 19 48 48 H 1.09006 * 109.69050 * 169.52821 * 24 23 21 49 49 H 1.08995 * 109.69296 * 290.06374 * 24 23 21 50 50 H 1.08998 * 109.69233 * 43.76701 * 31 30 28 51 51 H 1.09005 * 109.68975 * 283.17999 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1858 0.0000 4 1 3.0983 1.2618 0.5108 5 6 1.6248 2.2904 -0.6567 6 7 2.1397 3.4842 -0.4515 7 14 0.1875 2.0826 -1.8315 8 1 -1.0876 2.2349 -1.0857 9 1 0.2648 3.1153 -2.8958 10 1 0.2425 0.7323 -2.4471 11 6 2.1975 -1.2688 0.0006 12 6 2.3400 -1.7761 -1.4358 13 1 1.3525 -1.9397 -1.8674 14 6 3.1012 -0.7428 -2.2722 15 6 3.3619 -1.3142 -3.6679 16 6 4.2249 -2.5728 -3.5525 17 6 3.4765 -3.6268 -2.7306 18 7 3.0947 -3.0399 -1.4389 19 6 3.4318 -3.6456 -0.2830 20 8 3.0378 -3.1984 0.7732 21 6 4.2982 -4.8784 -0.3031 22 1 4.0121 -5.5096 -1.1445 23 6 4.1111 -5.6546 1.0034 24 6 4.7881 -7.0265 0.8876 25 6 6.1902 -6.8215 0.3779 26 7 7.2228 -7.6580 0.4015 27 7 8.2384 -7.0749 -0.1400 28 7 7.9186 -5.8839 -0.5224 29 1 8.5077 -5.2465 -0.9555 30 6 6.6260 -5.6822 -0.2143 31 6 5.7690 -4.4671 -0.4500 32 1 -0.3633 -0.5954 0.8376 33 1 -0.3632 1.0232 0.0968 34 1 -0.3633 -0.4276 -0.9344 35 1 1.7726 4.2561 -0.9100 36 1 1.6516 -2.0032 0.5928 37 1 3.1869 -1.1169 0.4321 38 1 4.0513 -0.5129 -1.7900 39 1 2.5066 0.1668 -2.3569 40 1 3.8818 -0.5715 -4.2730 41 1 2.4125 -1.5670 -4.1400 42 1 5.1644 -2.3256 -3.0582 43 1 4.4302 -2.9661 -4.5481 44 1 2.5817 -3.9413 -3.2678 45 1 4.1240 -4.4877 -2.5638 46 1 4.5602 -5.0963 1.8247 47 1 3.0469 -5.7904 1.1957 48 1 4.8196 -7.5043 1.8669 49 1 4.2314 -7.6533 0.1910 50 1 5.9445 -4.0832 -1.4549 51 1 6.0108 -3.6991 0.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158739823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:22 Heat of formation + Delta-G solvation = 92.387496 kcal Electronic energy + Delta-G solvation = -32620.850347 eV Core-core repulsion = 28558.302540 eV Total energy + Delta-G solvation = -4062.547806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.73626 -40.63745 -37.84685 -36.60852 -35.72681 -34.17941 -32.74560 -32.08813 -30.98485 -30.58370 -30.17928 -27.04667 -25.94189 -25.05800 -24.43194 -23.58466 -23.08940 -22.43899 -20.93915 -20.48439 -19.78874 -18.74267 -18.30936 -17.07420 -16.83887 -16.41975 -15.81989 -15.55728 -15.10247 -14.79225 -14.51990 -14.24148 -14.21573 -14.01495 -13.98695 -13.79310 -13.40287 -13.12058 -13.03059 -12.86459 -12.43249 -12.32950 -12.18023 -12.15292 -11.85453 -11.78218 -11.48107 -11.41166 -11.27835 -11.15206 -10.84427 -10.75918 -10.60171 -10.52798 -10.36426 -10.24006 -10.02298 -9.91891 -9.50037 -9.19047 -9.11801 -8.49732 -8.32198 -6.83173 -5.93442 -3.36314 1.23390 2.23054 2.30862 2.74137 3.04205 3.29653 3.42087 3.46052 3.90313 4.15892 4.38112 4.42481 4.50259 4.58314 4.66623 4.74280 4.89433 4.95261 5.02309 5.05878 5.14461 5.20135 5.25147 5.33046 5.37038 5.40733 5.48262 5.50703 5.51896 5.71699 5.77692 5.79633 5.85560 5.93023 5.94602 6.04910 6.07897 6.12676 6.31996 6.36240 6.41060 6.51114 6.56255 6.68679 6.71078 6.83886 7.03947 7.20427 7.58230 8.06353 8.15386 8.29335 8.43102 9.00566 9.74334 10.13544 11.22977 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.002997 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.107821 B = 9341.203613 C = 9751.526742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.612 5.612 3 C -0.254 4.254 4 H 0.082 0.918 5 C 0.023 3.977 6 N -0.915 5.915 7 Si 0.890 3.110 8 H -0.290 1.290 9 H -0.307 1.307 10 H -0.268 1.268 11 C 0.162 3.838 12 C 0.123 3.877 13 H 0.060 0.940 14 C -0.118 4.118 15 C -0.124 4.124 16 C -0.132 4.132 17 C 0.103 3.897 18 N -0.603 5.603 19 C 0.516 3.484 20 O -0.518 6.518 21 C -0.103 4.103 22 H 0.097 0.903 23 C -0.101 4.101 24 C -0.034 4.034 25 C -0.015 4.015 26 N -0.258 5.258 27 N -0.091 5.091 28 N -0.382 5.382 29 H 0.449 0.551 30 C -0.007 4.007 31 C -0.037 4.037 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.012 0.988 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -19.352 -5.960 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.337 5.337 3 C -0.383 4.383 4 H 0.099 0.901 5 C -0.176 4.176 6 N -0.558 5.558 7 Si 0.721 3.279 8 H -0.218 1.218 9 H -0.236 1.236 10 H -0.193 1.193 11 C 0.036 3.964 12 C 0.019 3.981 13 H 0.078 0.922 14 C -0.156 4.156 15 C -0.162 4.162 16 C -0.171 4.171 17 C -0.021 4.021 18 N -0.337 5.337 19 C 0.303 3.697 20 O -0.394 6.394 21 C -0.125 4.125 22 H 0.115 0.885 23 C -0.139 4.139 24 C -0.073 4.073 25 C -0.155 4.155 26 N -0.125 5.125 27 N -0.070 5.070 28 N -0.101 5.101 29 H 0.294 0.706 30 C -0.143 4.143 31 C -0.076 4.076 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.297 -20.100 -5.259 22.021 hybrid contribution -1.077 1.348 -1.504 2.289 sum 6.220 -18.752 -6.763 20.882 Atomic orbital electron populations 1.21440 0.85434 1.00463 0.97299 1.44412 1.00430 1.02861 1.85966 1.18921 1.05711 0.86140 1.27486 0.90074 1.25435 0.98179 0.95664 0.98275 1.69771 1.43234 0.98211 1.44601 0.86931 0.82636 0.76933 0.81359 1.21782 1.23562 1.19302 1.21568 0.97657 0.86579 0.90572 1.22459 0.92872 0.80888 1.01929 0.92242 1.21875 1.01544 0.99163 0.93035 1.21600 0.99318 0.96531 0.98702 1.21912 0.99212 0.96423 0.99519 1.21784 0.99492 0.95992 0.84805 1.48499 1.55557 1.24556 1.05101 1.20285 0.80906 0.84590 0.83913 1.90783 1.53640 1.64260 1.30715 1.21405 0.93549 0.96273 1.01307 0.88455 1.21494 1.02211 0.93955 0.96248 1.20022 0.87225 0.97990 1.02043 1.21776 0.98066 0.91118 1.04536 1.74826 0.96727 1.25752 1.15151 1.78579 1.21013 0.91846 1.15584 1.44699 1.09750 1.13882 1.41764 0.70583 1.21819 0.86255 1.00558 1.05676 1.20107 0.91057 0.92608 1.03865 0.95900 0.91973 0.97024 0.92848 0.91098 0.92157 0.91804 0.88762 0.91991 0.92450 0.91657 0.91368 0.91511 0.90199 0.90129 0.89659 0.89219 0.89748 0.89296 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 8.44 59.85 0.50 2.68 16 2 N -0.61 -14.47 2.32 -181.12 -0.42 -14.89 16 3 C -0.25 -6.91 8.47 -15.06 -0.13 -7.04 16 4 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 5 C 0.02 0.65 5.26 -17.43 -0.09 0.56 16 6 N -0.91 -27.66 13.97 55.49 0.78 -26.88 16 7 Si 0.89 21.93 23.16 -169.99 -3.94 17.99 16 8 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 9 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 10 H -0.27 -6.25 6.25 56.52 0.35 -5.90 16 11 C 0.16 3.31 3.67 -4.04 -0.01 3.29 16 12 C 0.12 2.08 3.21 -67.45 -0.22 1.87 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.12 -2.05 4.64 -26.61 -0.12 -2.17 16 15 C -0.12 -1.62 5.88 -26.68 -0.16 -1.78 16 16 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 17 C 0.10 0.95 6.05 -3.71 -0.02 0.93 16 18 N -0.60 -7.78 2.98 -165.02 -0.49 -8.27 16 19 C 0.52 6.63 6.67 -10.99 -0.07 6.56 16 20 O -0.52 -8.66 11.77 5.56 0.07 -8.60 16 21 C -0.10 -0.91 1.63 -91.49 -0.15 -1.06 16 22 H 0.10 0.69 6.48 -51.93 -0.34 0.35 16 23 C -0.10 -0.89 4.56 -26.45 -0.12 -1.01 16 24 C -0.03 -0.27 6.30 -27.72 -0.17 -0.45 16 25 C -0.02 -0.16 7.11 -83.13 -0.59 -0.75 16 26 N -0.26 -3.24 12.40 33.16 0.41 -2.83 16 27 N -0.09 -1.04 13.40 60.35 0.81 -0.24 16 28 N -0.38 -3.09 6.97 33.39 0.23 -2.86 16 29 H 0.45 1.92 8.96 -190.07 -1.70 0.22 16 30 C -0.01 -0.06 7.15 -82.49 -0.59 -0.65 16 31 C -0.04 -0.29 5.44 -27.73 -0.15 -0.44 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 1.47 4.50 -51.93 -0.23 1.24 16 34 H 0.01 0.24 6.81 -51.93 -0.35 -0.11 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.47 6.17 -51.93 -0.32 1.15 16 37 H 0.06 1.33 7.14 -51.92 -0.37 0.96 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 2.01 5.63 -51.93 -0.29 1.72 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.53 4.91 -51.93 -0.25 0.28 16 46 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 47 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.55 7.36 -51.93 -0.38 0.16 16 51 H 0.10 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -33.87 377.58 -8.50 -42.37 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -9.37 Total: -0.59 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.26 Total: -0.89 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 1.31 Total: -55.96 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.94 Total: 17.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.87 -8.50 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158739823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.755 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds