Wall clock time and date at job start Wed Apr 1 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00650 * 2 1 4 4 H 1.07995 * 120.00750 * 146.89104 * 3 2 1 5 5 C 1.38817 * 119.99381 * 326.89477 * 3 2 1 6 6 N 1.31622 * 120.00014 * 167.10394 * 5 3 2 7 7 Si 1.86796 * 120.00308 * 347.10253 * 5 3 2 8 8 H 1.48500 * 109.47478 * 90.14536 * 7 5 3 9 9 H 1.48496 * 109.47198 * 210.15182 * 7 5 3 10 10 H 1.48506 * 109.47162 * 330.14920 * 7 5 3 11 11 C 1.46503 * 119.99600 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47258 * 84.83332 * 11 2 1 13 13 H 1.09001 * 109.70115 * 299.38090 * 12 11 2 14 14 C 1.53189 * 109.58457 * 59.73276 * 12 11 2 15 15 C 1.53049 * 109.31327 * 174.42395 * 14 12 11 16 16 C 1.53041 * 109.53377 * 298.63776 * 15 14 12 17 17 C 1.53191 * 109.31674 * 61.36406 * 16 15 14 18 18 N 1.46925 * 108.89206 * 305.29098 * 17 16 15 19 19 C 1.34774 * 120.63362 * 233.68322 * 18 17 16 20 20 O 1.21272 * 120.00123 * 184.75116 * 19 18 17 21 21 C 1.50700 * 119.99680 * 4.74849 * 19 18 17 22 22 H 1.09004 * 109.45827 * 320.93228 * 21 19 18 23 23 C 1.53112 * 109.45716 * 200.96946 * 21 19 18 24 24 C 1.53424 * 109.57376 * 169.90612 * 23 21 19 25 25 C 1.50592 * 108.33895 * 49.82043 * 24 23 21 26 26 N 1.32908 * 129.16921 * 163.48626 * 25 24 23 27 27 N 1.29022 * 108.63947 * 180.14190 * 26 25 24 28 28 N 1.29112 * 110.25542 * 359.96767 * 27 26 25 29 29 H 0.96999 * 126.00514 * 179.91747 * 28 27 26 30 30 C 1.34395 * 107.98456 * 359.94161 * 28 27 26 31 31 C 1.50545 * 129.24940 * 180.23545 * 30 28 27 32 32 H 1.08996 * 109.46977 * 234.59419 * 1 2 3 33 33 H 1.09003 * 109.46596 * 354.59398 * 1 2 3 34 34 H 1.08990 * 109.47005 * 114.59158 * 1 2 3 35 35 H 0.96992 * 120.00164 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47597 * 324.83172 * 11 2 1 37 37 H 1.09008 * 109.46810 * 204.83353 * 11 2 1 38 38 H 1.08999 * 109.50312 * 54.47678 * 14 12 11 39 39 H 1.08999 * 109.52813 * 294.38620 * 14 12 11 40 40 H 1.09000 * 109.46189 * 178.61252 * 15 14 12 41 41 H 1.09004 * 109.45803 * 58.65014 * 15 14 12 42 42 H 1.08996 * 109.49515 * 301.40503 * 16 15 14 43 43 H 1.09002 * 109.52047 * 181.33111 * 16 15 14 44 44 H 1.08999 * 109.58481 * 65.15088 * 17 16 15 45 45 H 1.09000 * 109.58794 * 185.42904 * 17 16 15 46 46 H 1.08996 * 109.44916 * 289.93725 * 23 21 19 47 47 H 1.08998 * 109.45128 * 49.89782 * 23 21 19 48 48 H 1.09006 * 109.69050 * 169.52821 * 24 23 21 49 49 H 1.08995 * 109.69296 * 290.06374 * 24 23 21 50 50 H 1.08998 * 109.69233 * 43.76701 * 31 30 28 51 51 H 1.09005 * 109.68975 * 283.17999 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1858 0.0000 4 1 3.0983 1.2618 0.5108 5 6 1.6248 2.2904 -0.6567 6 7 2.1397 3.4842 -0.4515 7 14 0.1875 2.0826 -1.8315 8 1 -1.0876 2.2349 -1.0857 9 1 0.2648 3.1153 -2.8958 10 1 0.2425 0.7323 -2.4471 11 6 2.1975 -1.2688 0.0006 12 6 2.3400 -1.7761 -1.4358 13 1 1.3525 -1.9397 -1.8674 14 6 3.1012 -0.7428 -2.2722 15 6 3.3619 -1.3142 -3.6679 16 6 4.2249 -2.5728 -3.5525 17 6 3.4765 -3.6268 -2.7306 18 7 3.0947 -3.0399 -1.4389 19 6 3.4318 -3.6456 -0.2830 20 8 3.0378 -3.1984 0.7732 21 6 4.2982 -4.8784 -0.3031 22 1 4.0121 -5.5096 -1.1445 23 6 4.1111 -5.6546 1.0034 24 6 4.7881 -7.0265 0.8876 25 6 6.1902 -6.8215 0.3779 26 7 7.2228 -7.6580 0.4015 27 7 8.2384 -7.0749 -0.1400 28 7 7.9186 -5.8839 -0.5224 29 1 8.5077 -5.2465 -0.9555 30 6 6.6260 -5.6822 -0.2143 31 6 5.7690 -4.4671 -0.4500 32 1 -0.3633 -0.5954 0.8376 33 1 -0.3632 1.0232 0.0968 34 1 -0.3633 -0.4276 -0.9344 35 1 1.7726 4.2561 -0.9100 36 1 1.6516 -2.0032 0.5928 37 1 3.1869 -1.1169 0.4321 38 1 4.0513 -0.5129 -1.7900 39 1 2.5066 0.1668 -2.3569 40 1 3.8818 -0.5715 -4.2730 41 1 2.4125 -1.5670 -4.1400 42 1 5.1644 -2.3256 -3.0582 43 1 4.4302 -2.9661 -4.5481 44 1 2.5817 -3.9413 -3.2678 45 1 4.1240 -4.4877 -2.5638 46 1 4.5602 -5.0963 1.8247 47 1 3.0469 -5.7904 1.1957 48 1 4.8196 -7.5043 1.8669 49 1 4.2314 -7.6533 0.1910 50 1 5.9445 -4.0832 -1.4549 51 1 6.0108 -3.6991 0.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158739823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:21 Heat of formation + Delta-G solvation = 68.366097 kcal Electronic energy + Delta-G solvation = -32621.891993 eV Core-core repulsion = 28558.302540 eV Total energy + Delta-G solvation = -4063.589452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.47300 -41.70310 -38.92996 -37.59112 -37.34073 -34.93319 -33.92437 -33.79423 -32.45175 -31.29669 -31.04400 -28.45422 -27.84185 -26.18976 -25.32519 -24.45204 -23.94565 -23.66018 -22.13455 -21.77974 -20.72439 -19.65850 -19.07122 -18.84673 -18.04911 -17.30934 -17.21202 -16.89582 -16.40479 -15.75301 -15.65880 -15.39460 -15.23982 -15.09155 -14.94429 -14.67991 -14.55504 -14.52504 -14.37897 -14.13747 -13.94200 -13.74643 -13.37076 -13.13894 -12.99659 -12.96800 -12.57516 -12.44153 -12.23059 -12.13652 -12.06398 -11.97468 -11.87252 -11.76195 -11.67026 -11.54936 -11.49762 -11.30246 -11.19888 -10.86110 -10.10235 -9.90620 -9.45778 -8.78424 -8.13295 -5.54050 0.52350 1.31573 1.39645 1.45752 1.50442 1.54384 1.90403 2.02603 2.42693 3.15340 3.19624 3.38422 3.47715 3.68357 3.75862 3.85101 3.92941 3.97194 3.99812 4.08874 4.19496 4.24978 4.36031 4.41021 4.47143 4.50463 4.50573 4.56695 4.65702 4.70010 4.75752 4.79656 4.84243 4.90862 4.93228 5.00444 5.06483 5.08544 5.14253 5.16624 5.22178 5.25137 5.36016 5.39134 5.41678 5.56999 5.76054 5.94499 5.96704 6.15596 6.57939 6.96158 7.30475 7.39739 7.66334 8.05247 9.07156 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.002997 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.107821 B = 9341.203613 C = 9751.526742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.626 5.626 3 C -0.236 4.236 4 H 0.037 0.963 5 C -0.031 4.031 6 N -0.965 5.965 7 Si 0.953 3.047 8 H -0.281 1.281 9 H -0.315 1.315 10 H -0.245 1.245 11 C 0.172 3.828 12 C 0.135 3.865 13 H 0.060 0.940 14 C -0.114 4.114 15 C -0.121 4.121 16 C -0.127 4.127 17 C 0.098 3.902 18 N -0.602 5.602 19 C 0.514 3.486 20 O -0.564 6.564 21 C -0.091 4.091 22 H 0.130 0.870 23 C -0.096 4.096 24 C -0.027 4.027 25 C -0.027 4.027 26 N -0.292 5.292 27 N -0.115 5.115 28 N -0.364 5.364 29 H 0.464 0.536 30 C 0.003 3.997 31 C -0.031 4.031 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.116 0.884 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -22.406 -8.661 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.352 5.352 3 C -0.366 4.366 4 H 0.055 0.945 5 C -0.225 4.225 6 N -0.612 5.612 7 Si 0.782 3.218 8 H -0.208 1.208 9 H -0.244 1.244 10 H -0.169 1.169 11 C 0.048 3.952 12 C 0.030 3.970 13 H 0.078 0.922 14 C -0.152 4.152 15 C -0.158 4.158 16 C -0.164 4.164 17 C -0.024 4.024 18 N -0.335 5.335 19 C 0.303 3.697 20 O -0.443 6.443 21 C -0.112 4.112 22 H 0.148 0.852 23 C -0.135 4.135 24 C -0.066 4.066 25 C -0.168 4.168 26 N -0.157 5.157 27 N -0.094 5.094 28 N -0.086 5.086 29 H 0.313 0.687 30 C -0.134 4.134 31 C -0.071 4.071 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.123 0.877 50 H 0.134 0.866 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.772 -23.229 -7.989 25.481 hybrid contribution -0.826 2.293 -0.533 2.495 sum 5.946 -20.936 -8.522 23.373 Atomic orbital electron populations 1.21490 0.84126 0.99951 0.99146 1.44516 1.01372 1.02692 1.86574 1.18641 1.04208 0.87796 1.25977 0.94539 1.26030 1.01487 0.95017 0.99950 1.69925 1.45768 0.99158 1.46310 0.85895 0.79456 0.77567 0.78850 1.20800 1.24435 1.16918 1.21434 0.95714 0.85042 0.93053 1.21870 0.93579 0.82887 0.98708 0.92206 1.21719 0.99504 0.97920 0.96070 1.21573 1.00622 0.98316 0.95334 1.21910 0.98333 0.94566 1.01637 1.22138 1.00943 0.96670 0.82607 1.48470 1.54959 1.23037 1.07037 1.20976 0.80517 0.85234 0.83018 1.90761 1.55396 1.65730 1.32396 1.21359 0.93138 0.94274 1.02478 0.85249 1.21422 1.02107 0.94213 0.95718 1.20033 0.86304 0.97555 1.02683 1.22165 0.98554 0.91396 1.04684 1.74796 0.97554 1.27039 1.16331 1.78521 1.21163 0.93043 1.16633 1.44708 1.09838 1.13342 1.40680 0.68659 1.21840 0.86367 1.00187 1.04983 1.20093 0.90048 0.91822 1.05114 0.93820 0.93686 0.95020 0.93066 0.91150 0.94972 0.94066 0.93131 0.92003 0.91766 0.91497 0.87852 0.89969 0.86553 0.92123 0.89676 0.89097 0.87733 0.86604 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.18 8.44 127.77 1.08 5.26 16 2 N -0.63 -30.08 2.32 -726.93 -1.69 -31.77 16 3 C -0.24 -13.48 8.47 84.04 0.71 -12.77 16 4 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 5 C -0.03 -1.78 5.26 84.86 0.45 -1.33 16 6 N -0.97 -60.94 13.97 21.65 0.30 -60.64 16 7 Si 0.95 45.91 23.16 68.60 1.59 47.50 16 8 H -0.28 -13.03 6.62 99.48 0.66 -12.38 16 9 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 10 H -0.25 -10.78 6.25 99.48 0.62 -10.16 16 11 C 0.17 7.14 3.67 86.38 0.32 7.46 16 12 C 0.13 4.43 3.21 44.92 0.14 4.58 16 13 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.11 -3.92 4.64 30.67 0.14 -3.78 16 15 C -0.12 -2.85 5.88 30.62 0.18 -2.67 16 16 C -0.13 -1.83 6.08 30.67 0.19 -1.65 16 17 C 0.10 1.30 6.05 86.36 0.52 1.83 16 18 N -0.60 -13.90 2.98 -794.38 -2.37 -16.27 16 19 C 0.51 12.19 6.67 87.66 0.58 12.77 16 20 O -0.56 -18.82 11.77 -3.00 -0.04 -18.86 16 21 C -0.09 -1.30 1.63 -11.36 -0.02 -1.32 16 22 H 0.13 1.10 6.48 -2.38 -0.02 1.08 16 23 C -0.10 -1.51 4.56 30.77 0.14 -1.37 16 24 C -0.03 -0.37 6.30 29.96 0.19 -0.18 16 25 C -0.03 -0.50 7.11 41.75 0.30 -0.20 16 26 N -0.29 -6.90 12.40 -48.99 -0.61 -7.51 16 27 N -0.12 -2.45 13.40 37.02 0.50 -1.96 16 28 N -0.36 -5.02 6.97 -48.26 -0.34 -5.35 16 29 H 0.46 2.74 8.96 -219.68 -1.97 0.78 16 30 C 0.00 0.05 7.15 41.50 0.30 0.34 16 31 C -0.03 -0.39 5.44 29.94 0.16 -0.22 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 2.09 4.50 -2.39 -0.01 2.08 16 34 H 0.03 1.24 6.81 -2.39 -0.02 1.23 16 35 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.07 2.94 6.17 -2.39 -0.01 2.93 16 37 H 0.03 1.49 7.14 -2.38 -0.02 1.47 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.05 2.18 5.63 -2.39 -0.01 2.17 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.12 0.76 4.91 -2.39 -0.01 0.75 16 46 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 47 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 48 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.12 0.85 7.36 -2.39 -0.02 0.84 16 51 H 0.09 1.35 8.12 -2.38 -0.02 1.33 16 Total: -1.00 -79.57 377.58 1.59 -77.99 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -1.15 Total: 10.13 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.38 Total: 6.73 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -4.20 Total: -123.49 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.59 Total: 47.50 kcal Total: -79.57 1.59 -77.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158739823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.353 kcal (2) G-P(sol) polarization free energy of solvation -79.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds