Wall clock time and date at job start Wed Apr 1 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47083 * 270.00113 * 3 2 1 5 5 H 1.48503 * 109.46726 * 29.99724 * 3 2 1 6 6 H 1.48497 * 109.46964 * 149.99898 * 3 2 1 7 7 C 1.38810 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99607 * 164.74877 * 7 2 1 9 9 N 1.36932 * 119.99918 * 344.74029 * 7 2 1 10 10 C 1.47008 * 121.38005 * 335.94927 * 9 7 2 11 11 C 1.50321 * 109.16761 * 222.96922 * 10 9 7 12 12 C 1.29454 * 123.65067 * 349.02069 * 11 10 9 13 13 C 1.50698 * 117.69268 * 180.88349 * 12 11 10 14 14 C 1.53004 * 109.47097 * 94.98019 * 13 12 11 15 15 N 1.46502 * 109.46788 * 180.02562 * 14 13 12 16 16 C 1.34775 * 119.99814 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99859 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00123 * 179.97438 * 16 15 14 19 19 H 1.09001 * 110.13292 * 337.35006 * 18 16 15 20 20 C 1.54803 * 110.15271 * 99.04196 * 18 16 15 21 21 C 1.55495 * 104.91176 * 115.46630 * 20 18 16 22 22 C 1.53927 * 102.11409 * 337.84690 * 21 20 18 23 23 H 1.08999 * 110.99701 * 281.31460 * 22 21 20 24 24 C 1.52357 * 113.82763 * 155.30482 * 22 21 20 25 25 C 1.53637 * 107.60167 * 184.78018 * 24 22 21 26 26 C 1.52825 * 110.60787 * 56.40368 * 25 24 22 27 27 C 1.52331 * 110.76382 * 306.41996 * 26 25 24 28 28 N 1.45534 * 108.55637 * 56.68734 * 27 26 25 29 29 C 1.49963 * 124.61251 * 0.86027 * 12 11 10 30 30 C 1.47349 * 121.37372 * 155.97260 * 9 7 2 31 31 H 0.97003 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.51576 * 342.87793 * 10 9 7 33 33 H 1.09002 * 109.51804 * 103.05692 * 10 9 7 34 34 H 1.08003 * 118.17205 * 169.02286 * 11 10 9 35 35 H 1.08996 * 109.47211 * 214.98111 * 13 12 11 36 36 H 1.09000 * 109.47263 * 334.97800 * 13 12 11 37 37 H 1.09003 * 109.46714 * 299.99629 * 14 13 12 38 38 H 1.08997 * 109.47463 * 60.00250 * 14 13 12 39 39 H 0.97000 * 120.00458 * 359.97438 * 15 14 13 40 40 H 1.09001 * 110.33646 * 234.35227 * 20 18 16 41 41 H 1.08997 * 110.33947 * 356.60113 * 20 18 16 42 42 H 1.09005 * 110.91663 * 219.62921 * 21 20 18 43 43 H 1.08999 * 110.88059 * 96.04678 * 21 20 18 44 44 H 1.09003 * 109.83342 * 304.30291 * 24 22 21 45 45 H 1.08999 * 109.83595 * 65.18754 * 24 22 21 46 46 H 1.08994 * 109.25478 * 176.70134 * 25 24 22 47 47 H 1.09003 * 109.24248 * 296.12349 * 25 24 22 48 48 H 1.09003 * 109.24128 * 66.43974 * 26 25 24 49 49 H 1.08998 * 109.24027 * 185.87424 * 26 25 24 50 50 H 1.09002 * 108.99117 * 297.14778 * 27 26 25 51 51 H 1.09000 * 109.88679 * 176.76113 * 27 26 25 52 52 H 1.09004 * 109.31789 * 220.71722 * 29 12 11 53 53 H 1.08994 * 109.31718 * 101.28938 * 29 12 11 54 54 H 1.09003 * 109.77748 * 358.60006 * 30 9 7 55 55 H 1.08998 * 109.82307 * 237.81900 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0618 -1.2187 -0.2455 9 7 1.3617 -2.3669 0.3132 10 6 0.1408 -2.3673 1.1319 11 6 0.2178 -3.4865 2.1325 12 6 1.1135 -4.4204 2.0966 13 6 1.0533 -5.4897 3.1568 14 6 0.2778 -6.6952 2.6219 15 7 0.2187 -7.7344 3.6528 16 6 -0.4189 -8.8954 3.4037 17 8 -0.9442 -9.0795 2.3261 18 6 -0.4791 -9.9646 4.4639 19 1 0.3356 -9.8331 5.1760 20 6 -1.8417 -9.9128 5.1968 21 6 -2.5321 -11.2631 4.8538 22 6 -1.8079 -11.6768 3.5601 23 1 -2.1977 -11.1291 2.7021 24 6 -1.8219 -13.1779 3.2999 25 6 -0.9653 -13.4412 2.0520 26 6 0.4461 -12.8865 2.2416 27 6 0.3998 -11.4170 2.6403 28 7 -0.4018 -11.2900 3.8483 29 6 2.2065 -4.5135 1.0741 30 6 1.8592 -3.6719 -0.1568 31 1 -0.4850 0.8401 -0.0004 32 1 0.0534 -1.4155 1.6560 33 1 -0.7282 -2.5117 0.4899 34 1 -0.5150 -3.5129 2.9254 35 1 2.0652 -5.7968 3.4210 36 1 0.5504 -5.0971 4.0406 37 1 -0.7342 -6.3880 2.3578 38 1 0.7807 -7.0878 1.7381 39 1 0.6392 -7.5873 4.5145 40 1 -1.6900 -9.8265 6.2728 41 1 -2.4380 -9.0777 4.8293 42 1 -3.5979 -11.1207 4.6746 43 1 -2.3665 -11.9958 5.6436 44 1 -1.4006 -13.7055 4.1557 45 1 -2.8442 -13.5135 3.1255 46 1 -0.9086 -14.5151 1.8750 47 1 -1.4279 -12.9594 1.1906 48 1 0.9513 -13.4504 3.0257 49 1 1.0013 -12.9911 1.3095 50 1 -0.0567 -10.8446 1.8328 51 1 1.4096 -11.0517 2.8274 52 1 2.3330 -5.5541 0.7751 53 1 3.1381 -4.1503 1.5080 54 1 2.7497 -3.5285 -0.7688 55 1 1.0873 -4.1732 -0.7407 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160466518.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:23 Heat of formation + Delta-G solvation = -24.027270 kcal Electronic energy + Delta-G solvation = -31036.492324 eV Core-core repulsion = 27072.436738 eV Total energy + Delta-G solvation = -3964.055586 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.95177 -39.84445 -39.27413 -36.75537 -35.96837 -35.13050 -33.30562 -33.12846 -31.55450 -30.73793 -29.99300 -28.61316 -27.03946 -24.90132 -24.30858 -23.92680 -23.12875 -22.49080 -22.16587 -21.31847 -20.65780 -19.48758 -18.22589 -17.67244 -17.32826 -17.03554 -16.54003 -16.53050 -16.32090 -15.74479 -15.57498 -15.49074 -15.34238 -15.16761 -15.02750 -14.59395 -14.35674 -14.12010 -14.03613 -13.79008 -13.53718 -13.41264 -13.25966 -13.20778 -12.89029 -12.80722 -12.65139 -12.59558 -12.40638 -12.33848 -12.20308 -11.99760 -11.88414 -11.78390 -11.70505 -11.58051 -11.33083 -11.27953 -11.21935 -11.12659 -10.70619 -10.16190 -9.53259 -9.26706 -8.77825 -7.90201 -5.32717 1.38328 1.45185 1.46333 1.50744 1.56460 2.18933 2.49249 2.88941 3.26624 3.49166 3.62268 3.68544 3.72778 3.92432 3.99646 4.02754 4.07709 4.08913 4.13185 4.22026 4.25208 4.38685 4.45578 4.51014 4.53483 4.54798 4.63612 4.66526 4.75615 4.81776 4.83475 4.87522 4.92933 4.93804 4.94542 5.03784 5.04256 5.05589 5.12738 5.14057 5.18623 5.19956 5.26537 5.31589 5.37737 5.39954 5.47069 5.50407 5.58493 5.84464 5.92060 6.09237 6.25114 6.31289 6.52655 7.10683 7.20252 7.80436 8.35645 9.18526 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.001799 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.583838 B =15560.469884 C =15973.183463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.058 4.058 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.207 3.793 11 C -0.174 4.174 12 C -0.121 4.121 13 C -0.077 4.077 14 C 0.134 3.866 15 N -0.713 5.713 16 C 0.483 3.517 17 O -0.581 6.581 18 C 0.061 3.939 19 H 0.130 0.870 20 C -0.111 4.111 21 C -0.110 4.110 22 C 0.057 3.943 23 H 0.034 0.966 24 C -0.099 4.099 25 C -0.122 4.122 26 C -0.109 4.109 27 C 0.045 3.955 28 N -0.503 5.503 29 C -0.087 4.087 30 C 0.135 3.865 31 H 0.250 0.750 32 H 0.056 0.944 33 H 0.001 0.999 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.030 0.970 51 H 0.068 0.932 52 H 0.083 0.917 53 H 0.070 0.930 54 H 0.059 0.941 55 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -28.281 15.325 32.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.082 3.918 11 C -0.194 4.194 12 C -0.122 4.122 13 C -0.115 4.115 14 C 0.010 3.990 15 N -0.366 5.366 16 C 0.270 3.730 17 O -0.461 6.461 18 C -0.051 4.051 19 H 0.148 0.852 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.051 4.051 23 H 0.052 0.948 24 C -0.137 4.137 25 C -0.159 4.159 26 C -0.147 4.147 27 C -0.083 4.083 28 N -0.227 5.227 29 C -0.125 4.125 30 C 0.010 3.990 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.019 0.981 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.255 0.745 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.048 0.952 51 H 0.086 0.914 52 H 0.101 0.899 53 H 0.088 0.912 54 H 0.078 0.922 55 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.834 -28.587 14.877 32.237 hybrid contribution -0.089 2.267 -1.092 2.518 sum -0.923 -26.320 13.785 29.726 Atomic orbital electron populations 1.70202 1.06679 1.25826 1.56174 1.25833 0.96226 1.01608 1.01612 0.85193 0.77972 0.79216 0.77579 1.21134 1.21833 1.19376 1.19535 0.92513 0.85530 1.41216 0.91073 1.44427 1.29206 1.02090 1.58194 1.19352 0.87193 0.95284 0.90015 1.22830 0.99398 0.97203 0.99941 1.20581 0.97142 0.96276 0.98183 1.20793 1.01716 0.92306 0.96640 1.21111 0.99575 0.87391 0.90946 1.46104 1.56331 1.15663 1.18487 1.22341 0.77194 0.83853 0.89653 1.90675 1.47543 1.80086 1.27768 1.22570 1.02403 0.85639 0.94470 0.85192 1.22639 0.92227 0.98227 1.01833 1.22416 0.99002 0.96706 0.96685 1.22714 0.88146 0.96917 0.97277 0.94797 1.21485 1.00230 0.93546 0.98420 1.21586 0.95296 1.01378 0.97683 1.21321 0.97582 0.94188 1.01582 1.21883 0.97183 0.98176 0.91071 1.63303 1.10470 1.20721 1.28235 1.20705 0.96896 0.99842 0.95069 1.21143 0.97024 0.86110 0.94734 0.94120 0.92552 0.98134 0.86895 0.88892 0.89693 0.93722 0.92886 0.74547 0.87060 0.92420 0.90533 0.88643 0.89980 0.90640 0.90298 0.93951 0.90575 0.91377 0.95216 0.91371 0.89863 0.91194 0.92195 0.96698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 11.06 21.65 0.24 -56.99 16 2 C -0.06 -3.34 5.01 84.86 0.43 -2.91 16 3 Si 0.97 45.68 29.58 68.60 2.03 47.71 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.26 -14.60 9.71 84.03 0.82 -13.78 16 8 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 9 N -0.62 -32.29 3.01 -703.36 -2.12 -34.40 16 10 C 0.21 10.54 5.23 85.42 0.45 10.99 16 11 C -0.17 -6.81 9.47 27.11 0.26 -6.55 16 12 C -0.12 -3.98 5.11 -15.14 -0.08 -4.05 16 13 C -0.08 -1.73 5.32 29.85 0.16 -1.57 16 14 C 0.13 3.24 5.66 86.38 0.49 3.73 16 15 N -0.71 -13.21 5.56 -463.05 -2.57 -15.78 16 16 C 0.48 10.80 5.91 87.66 0.52 11.31 16 17 O -0.58 -18.51 13.28 -3.04 -0.04 -18.55 16 18 C 0.06 0.96 3.61 44.89 0.16 1.12 16 19 H 0.13 1.32 8.11 -2.39 -0.02 1.30 16 20 C -0.11 -1.41 6.63 32.07 0.21 -1.19 16 21 C -0.11 -1.41 6.64 31.77 0.21 -1.20 16 22 C 0.06 1.01 2.33 44.67 0.10 1.12 16 23 H 0.03 0.85 7.07 -2.39 -0.02 0.84 16 24 C -0.10 -1.37 5.71 30.60 0.17 -1.20 16 25 C -0.12 -1.84 5.94 30.75 0.18 -1.65 16 26 C -0.11 -1.74 6.02 30.31 0.18 -1.56 16 27 C 0.04 0.91 4.79 86.34 0.41 1.33 16 28 N -0.50 -8.90 4.62 -847.93 -3.92 -12.82 16 29 C -0.09 -2.92 5.95 29.65 0.18 -2.74 16 30 C 0.14 5.81 6.58 86.25 0.57 6.38 16 31 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.06 3.20 6.40 -2.39 -0.02 3.19 16 33 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.11 3.84 7.73 -2.91 -0.02 3.82 16 35 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 36 H 0.08 1.69 7.78 -2.39 -0.02 1.67 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 39 H 0.42 4.67 8.44 -92.71 -0.78 3.89 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.92 7.71 -2.39 -0.02 0.90 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.03 0.82 5.79 -2.39 -0.01 0.80 16 51 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 53 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 54 H 0.06 2.47 7.96 -2.39 -0.02 2.46 16 55 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -73.39 415.47 -0.89 -74.28 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.07 Total: 19.00 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.42 Total: -2.45 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -8.37 Total: -120.00 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.04 Total: -18.55 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.39 -0.89 -74.28 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160466518.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.255 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds