Wall clock time and date at job start Wed Apr 1 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47191 * 2 1 4 4 C 1.53009 * 109.46971 * 119.99650 * 2 1 3 5 5 C 1.52997 * 109.47081 * 64.99825 * 4 2 1 6 6 N 1.46906 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00005 * 293.95903 * 6 5 4 8 8 C 1.38536 * 110.99973 * 169.99844 * 6 5 4 9 9 N 1.31246 * 126.37368 * 55.00047 * 8 6 5 10 10 N 1.28513 * 110.09616 * 179.81581 * 9 8 6 11 11 C 1.31223 * 109.95741 * 0.45191 * 10 9 8 12 12 C 1.47948 * 126.47669 * 179.69432 * 11 10 9 13 13 C 1.36708 * 126.93213 * 0.03763 * 12 11 10 14 14 N 1.35210 * 106.01573 * 179.97438 * 13 12 11 15 15 C 1.46496 * 125.72833 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46676 * 125.00308 * 15 14 13 17 17 C 1.50704 * 109.46922 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00263 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99923 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00267 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47113 * 89.99716 * 21 19 17 23 23 H 1.48495 * 109.47655 * 210.00234 * 21 19 17 24 24 H 1.48504 * 109.46959 * 330.00382 * 21 19 17 25 25 N 1.28638 * 108.53931 * 0.02562 * 14 13 12 26 26 N 1.28609 * 110.53991 * 359.75439 * 25 14 13 27 27 N 1.36600 * 126.38045 * 235.30447 * 8 6 5 28 28 C 1.46497 * 127.17700 * 359.97438 * 27 8 6 29 29 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47288 * 300.00300 * 1 2 3 31 31 H 1.09000 * 109.46506 * 60.00713 * 1 2 3 32 32 H 1.08999 * 109.47581 * 239.98985 * 2 1 3 33 33 H 1.08995 * 109.47127 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46597 * 299.99374 * 3 2 1 35 35 H 1.08997 * 109.47183 * 59.99124 * 3 2 1 36 36 H 1.09005 * 109.47009 * 305.00208 * 4 2 1 37 37 H 1.08994 * 109.47055 * 185.00397 * 4 2 1 38 38 H 1.08994 * 109.47643 * 300.00211 * 5 4 2 39 39 H 1.08996 * 109.46986 * 60.00320 * 5 4 2 40 40 H 1.09003 * 109.47568 * 65.63076 * 7 6 5 41 41 H 1.08999 * 109.47390 * 185.62909 * 7 6 5 42 42 H 1.08997 * 109.46996 * 305.63145 * 7 6 5 43 43 H 1.08003 * 126.99170 * 359.97438 * 13 12 11 44 44 H 1.08996 * 109.47548 * 245.00123 * 15 14 13 45 45 H 1.09000 * 109.47463 * 5.00994 * 15 14 13 46 46 H 1.09002 * 109.47550 * 299.99796 * 16 15 14 47 47 H 1.08996 * 109.46928 * 60.00575 * 16 15 14 48 48 H 0.97000 * 119.99948 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.47150 * 95.46446 * 28 27 8 50 50 H 1.09000 * 109.47305 * 215.47166 * 28 27 8 51 51 H 1.09010 * 109.47164 * 335.46599 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1882 6 7 2.1243 -2.8877 2.3880 7 6 3.5925 -2.9290 2.4102 8 6 1.5902 -4.1628 2.4778 9 7 1.6530 -5.0994 1.5605 10 7 1.0571 -6.1611 1.9719 11 6 0.5690 -5.9635 3.1738 12 6 -0.1898 -6.9397 3.9863 13 6 -0.5194 -8.2196 3.6367 14 7 -1.2072 -8.7271 4.6843 15 6 -1.7674 -10.0783 4.7660 16 6 -1.2436 -10.7722 6.0250 17 6 -1.8193 -12.1624 6.1087 18 1 -2.4913 -12.5158 5.3405 19 6 -1.4883 -12.9831 7.1659 20 7 -0.6696 -12.5530 8.1011 21 14 -2.2025 -14.7061 7.2702 22 1 -1.3020 -15.6583 6.5717 23 1 -2.3328 -15.1026 8.6953 24 1 -3.5404 -14.7271 6.6262 25 7 -1.2879 -7.8240 5.5968 26 7 -0.6910 -6.7485 5.2212 27 7 0.8953 -4.6776 3.5352 28 6 0.5667 -4.0009 4.7923 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6053 -0.2616 2.1371 37 1 3.1262 -0.6443 1.2953 38 1 0.5489 -2.2724 1.1422 39 1 2.0698 -2.6550 0.3006 40 1 3.9831 -1.9163 2.5101 41 1 3.9263 -3.5320 3.2546 42 1 3.9576 -3.3693 1.4824 43 1 -0.2791 -8.7229 2.7118 44 1 -2.8548 -10.0188 4.8097 45 1 -1.4698 -10.6488 3.8862 46 1 -0.1561 -10.8318 5.9813 47 1 -1.5412 -10.2017 6.9047 48 1 -0.4370 -13.1303 8.8451 49 1 -0.4347 -3.5760 4.7253 50 1 0.6028 -4.7189 5.6116 51 1 1.2879 -3.2043 4.9754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262917227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:06 Heat of formation + Delta-G solvation = 167.076126 kcal Electronic energy + Delta-G solvation = -29671.647538 eV Core-core repulsion = 25644.631224 eV Total energy + Delta-G solvation = -4027.016313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.17355 -42.74681 -38.58979 -36.19974 -35.40884 -34.81317 -32.98960 -31.98919 -30.17570 -29.85426 -28.84752 -27.68973 -27.53338 -26.36091 -25.68252 -23.74951 -23.31588 -22.49872 -21.32046 -20.58009 -20.31472 -20.11494 -17.66088 -17.13108 -16.77705 -16.28015 -16.18186 -15.96792 -15.54800 -15.38710 -14.98852 -14.75091 -14.58538 -14.20643 -14.08835 -13.58371 -13.51885 -13.40002 -13.05783 -12.85721 -12.59190 -12.51275 -12.42834 -12.03458 -11.89024 -11.80740 -11.70998 -11.50366 -11.24126 -11.17194 -11.06487 -11.01489 -10.95716 -10.86561 -10.67907 -10.54468 -10.26300 -10.15918 -9.91453 -9.50213 -9.46648 -9.14536 -8.57295 -8.44640 -6.21119 -4.28184 1.18909 1.97483 2.01383 2.36420 2.73568 3.19697 3.21305 3.28604 3.30596 3.41083 3.89232 4.29666 4.37057 4.44565 4.52388 4.59849 4.69897 4.78499 4.86471 5.03652 5.04810 5.08137 5.15266 5.15597 5.18694 5.20931 5.25569 5.27530 5.30357 5.40107 5.47279 5.48182 5.51235 5.55823 5.62909 5.66388 5.76734 5.78794 5.90338 5.93297 5.94516 5.98703 6.04003 6.22246 6.34224 6.41182 6.78753 7.01618 7.33180 7.42169 7.72770 8.04287 8.55927 8.68148 8.76838 9.37910 10.89832 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.001626 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.583119 B =17213.920262 C =17292.507971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.111 4.111 5 C 0.066 3.934 6 N -0.466 5.466 7 C 0.032 3.968 8 C 0.339 3.661 9 N -0.305 5.305 10 N -0.272 5.272 11 C 0.284 3.716 12 C 0.020 3.980 13 C 0.007 3.993 14 N -0.265 5.265 15 C 0.109 3.891 16 C 0.014 3.986 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 N -0.057 5.057 26 N -0.270 5.270 27 N -0.452 5.452 28 C 0.082 3.918 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.199 0.801 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.025 0.975 47 H 0.039 0.961 48 H 0.265 0.735 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 25.231 -13.979 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.149 4.149 5 C -0.060 4.060 6 N -0.191 5.191 7 C -0.115 4.115 8 C -0.017 4.017 9 N -0.150 5.150 10 N -0.116 5.116 11 C 0.017 3.983 12 C -0.120 4.120 13 C -0.149 4.149 14 N -0.056 5.056 15 C -0.009 4.009 16 C -0.024 4.024 17 C -0.572 4.572 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.037 5.037 26 N -0.139 5.139 27 N -0.143 5.143 28 C -0.061 4.061 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.216 0.784 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.043 0.957 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.120 0.880 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.195 25.098 -13.210 28.834 hybrid contribution -0.009 -1.107 -0.248 1.135 sum 5.187 23.991 -13.457 27.992 Atomic orbital electron populations 1.21913 0.95140 1.01968 1.01813 1.21082 0.96062 0.96250 0.98084 1.21822 1.00913 0.95772 1.01841 1.21684 1.01251 0.93437 0.98521 1.22281 1.00866 0.93704 0.89179 1.58646 1.09333 1.09331 1.41806 1.22490 0.83851 1.03051 1.02147 1.22159 0.99906 0.93152 0.86513 1.74548 1.19251 0.97114 1.24091 1.74354 1.12175 1.17998 1.07042 1.21027 1.01184 0.82852 0.93239 1.18354 1.07114 0.92313 0.94180 1.23533 1.00538 0.94471 0.96389 1.47941 1.33709 1.14179 1.09817 1.22917 0.99458 0.73523 1.05015 1.19435 0.97325 0.95381 0.90245 1.20919 1.29468 0.97733 1.09090 0.91995 1.24992 0.94824 0.98836 0.95320 1.69971 1.33935 1.36874 1.11552 0.86468 0.79510 0.83845 0.77463 1.20459 1.21018 1.19658 1.78265 1.18240 0.92780 1.14452 1.75264 1.11523 1.17761 1.09318 1.46170 1.40487 1.11603 1.16068 1.22155 1.02524 0.98704 0.82685 0.92494 0.92556 0.92734 0.91090 0.92688 0.92676 0.92606 0.90885 0.91461 0.90357 0.92660 0.89733 0.91251 0.93484 0.78369 0.88677 0.88168 0.95650 0.94317 0.92543 0.90076 0.88009 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.95 37.16 0.33 -0.56 16 2 C -0.10 -0.53 2.92 -90.62 -0.26 -0.79 16 3 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 4 C -0.11 -0.66 4.60 -26.73 -0.12 -0.79 16 5 C 0.07 0.56 4.56 -3.82 -0.02 0.54 16 6 N -0.47 -4.55 4.74 -182.35 -0.86 -5.41 16 7 C 0.03 0.26 9.18 60.06 0.55 0.81 16 8 C 0.34 4.45 6.41 -318.70 -2.04 2.41 16 9 N -0.30 -4.74 12.09 30.34 0.37 -4.37 16 10 N -0.27 -4.54 12.21 32.60 0.40 -4.14 16 11 C 0.28 4.51 7.94 -153.82 -1.22 3.29 16 12 C 0.02 0.33 7.07 -83.21 -0.59 -0.26 16 13 C 0.01 0.10 11.54 -16.62 -0.19 -0.09 16 14 N -0.26 -4.72 3.43 -60.93 -0.21 -4.93 16 15 C 0.11 1.96 6.39 -4.04 -0.03 1.93 16 16 C 0.01 0.33 5.10 -27.88 -0.14 0.19 16 17 C -0.53 -13.74 9.11 -34.44 -0.31 -14.05 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 21 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 N -0.06 -1.11 12.88 60.35 0.78 -0.34 16 26 N -0.27 -4.86 10.91 33.01 0.36 -4.50 16 27 N -0.45 -6.16 3.23 -122.01 -0.39 -6.55 16 28 C 0.08 0.87 10.74 59.85 0.64 1.51 16 29 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.36 6.68 -51.93 -0.35 0.01 16 38 H 0.08 0.73 6.48 -51.93 -0.34 0.39 16 39 H 0.06 0.50 8.07 -51.93 -0.42 0.09 16 40 H 0.08 0.48 6.75 -51.93 -0.35 0.13 16 41 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 42 H 0.05 0.40 8.07 -51.93 -0.42 -0.02 16 43 H 0.20 2.50 8.06 -52.48 -0.42 2.07 16 44 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.10 1.54 8.06 -51.93 -0.42 1.12 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 48 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 1.20 7.01 -51.93 -0.36 0.83 16 51 H 0.09 0.78 8.11 -51.92 -0.42 0.36 16 LS Contribution 420.29 15.07 6.33 6.33 Total: -1.00 -31.43 420.29 -9.13 -40.56 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.45 Total: -2.70 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.16 Total: -4.61 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 1.17 Total: -54.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.43 -9.13 -40.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262917227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.635 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds