Wall clock time and date at job start Wed Apr 1 2020 05:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47191 * 2 1 4 4 C 1.53009 * 109.46971 * 119.99650 * 2 1 3 5 5 C 1.52997 * 109.47081 * 64.99825 * 4 2 1 6 6 N 1.46906 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00005 * 293.95903 * 6 5 4 8 8 C 1.38536 * 110.99973 * 169.99844 * 6 5 4 9 9 N 1.31246 * 126.37368 * 55.00047 * 8 6 5 10 10 N 1.28513 * 110.09616 * 179.81581 * 9 8 6 11 11 C 1.31223 * 109.95741 * 0.45191 * 10 9 8 12 12 C 1.47948 * 126.47669 * 179.69432 * 11 10 9 13 13 C 1.36708 * 126.93213 * 0.03763 * 12 11 10 14 14 N 1.35210 * 106.01573 * 179.97438 * 13 12 11 15 15 C 1.46496 * 125.72833 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46676 * 125.00308 * 15 14 13 17 17 C 1.50704 * 109.46922 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00263 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99923 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00051 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00267 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47113 * 89.99716 * 21 19 17 23 23 H 1.48495 * 109.47655 * 210.00234 * 21 19 17 24 24 H 1.48504 * 109.46959 * 330.00382 * 21 19 17 25 25 N 1.28638 * 108.53931 * 0.02562 * 14 13 12 26 26 N 1.28609 * 110.53991 * 359.75439 * 25 14 13 27 27 N 1.36600 * 126.38045 * 235.30447 * 8 6 5 28 28 C 1.46497 * 127.17700 * 359.97438 * 27 8 6 29 29 H 1.09005 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47288 * 300.00300 * 1 2 3 31 31 H 1.09000 * 109.46506 * 60.00713 * 1 2 3 32 32 H 1.08999 * 109.47581 * 239.98985 * 2 1 3 33 33 H 1.08995 * 109.47127 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46597 * 299.99374 * 3 2 1 35 35 H 1.08997 * 109.47183 * 59.99124 * 3 2 1 36 36 H 1.09005 * 109.47009 * 305.00208 * 4 2 1 37 37 H 1.08994 * 109.47055 * 185.00397 * 4 2 1 38 38 H 1.08994 * 109.47643 * 300.00211 * 5 4 2 39 39 H 1.08996 * 109.46986 * 60.00320 * 5 4 2 40 40 H 1.09003 * 109.47568 * 65.63076 * 7 6 5 41 41 H 1.08999 * 109.47390 * 185.62909 * 7 6 5 42 42 H 1.08997 * 109.46996 * 305.63145 * 7 6 5 43 43 H 1.08003 * 126.99170 * 359.97438 * 13 12 11 44 44 H 1.08996 * 109.47548 * 245.00123 * 15 14 13 45 45 H 1.09000 * 109.47463 * 5.00994 * 15 14 13 46 46 H 1.09002 * 109.47550 * 299.99796 * 16 15 14 47 47 H 1.08996 * 109.46928 * 60.00575 * 16 15 14 48 48 H 0.97000 * 119.99948 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.47150 * 95.46446 * 28 27 8 50 50 H 1.09000 * 109.47305 * 215.47166 * 28 27 8 51 51 H 1.09010 * 109.47164 * 335.46599 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1882 6 7 2.1243 -2.8877 2.3880 7 6 3.5925 -2.9290 2.4102 8 6 1.5902 -4.1628 2.4778 9 7 1.6530 -5.0994 1.5605 10 7 1.0571 -6.1611 1.9719 11 6 0.5690 -5.9635 3.1738 12 6 -0.1898 -6.9397 3.9863 13 6 -0.5194 -8.2196 3.6367 14 7 -1.2072 -8.7271 4.6843 15 6 -1.7674 -10.0783 4.7660 16 6 -1.2436 -10.7722 6.0250 17 6 -1.8193 -12.1624 6.1087 18 1 -2.4913 -12.5158 5.3405 19 6 -1.4883 -12.9831 7.1659 20 7 -0.6696 -12.5530 8.1011 21 14 -2.2025 -14.7061 7.2702 22 1 -1.3020 -15.6583 6.5717 23 1 -2.3328 -15.1026 8.6953 24 1 -3.5404 -14.7271 6.6262 25 7 -1.2879 -7.8240 5.5968 26 7 -0.6910 -6.7485 5.2212 27 7 0.8953 -4.6776 3.5352 28 6 0.5667 -4.0009 4.7923 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6053 -0.2616 2.1371 37 1 3.1262 -0.6443 1.2953 38 1 0.5489 -2.2724 1.1422 39 1 2.0698 -2.6550 0.3006 40 1 3.9831 -1.9163 2.5101 41 1 3.9263 -3.5320 3.2546 42 1 3.9576 -3.3693 1.4824 43 1 -0.2791 -8.7229 2.7118 44 1 -2.8548 -10.0188 4.8097 45 1 -1.4698 -10.6488 3.8862 46 1 -0.1561 -10.8318 5.9813 47 1 -1.5412 -10.2017 6.9047 48 1 -0.4370 -13.1303 8.8451 49 1 -0.4347 -3.5760 4.7253 50 1 0.6028 -4.7189 5.6116 51 1 1.2879 -3.2043 4.9754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262917227.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:05 Heat of formation + Delta-G solvation = 150.491375 kcal Electronic energy + Delta-G solvation = -29672.366706 eV Core-core repulsion = 25644.631224 eV Total energy + Delta-G solvation = -4027.735482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.45404 -43.94440 -39.29836 -36.92153 -36.76038 -35.97525 -34.82190 -33.23832 -31.84727 -30.72614 -29.78027 -28.63364 -27.98936 -27.45268 -27.10373 -24.99566 -24.42991 -23.84067 -22.63290 -21.63588 -21.40530 -20.78987 -19.03996 -18.46360 -17.86831 -17.70624 -17.33123 -17.15847 -16.60023 -16.43469 -16.20667 -15.75356 -15.53314 -15.40292 -15.08234 -14.64787 -14.41283 -14.32446 -14.11894 -13.78696 -13.66798 -13.54347 -13.12193 -13.06883 -13.01279 -12.91518 -12.77115 -12.71960 -12.59172 -12.42559 -12.25004 -12.19338 -11.93740 -11.75211 -11.69692 -11.49877 -11.48418 -11.40325 -11.37300 -11.16614 -10.93551 -10.61429 -10.00155 -9.67587 -8.25289 -6.38828 0.02343 0.63477 0.97595 1.17534 1.39095 1.44802 1.46938 1.56240 1.94543 2.40251 2.48578 2.73541 3.10918 3.44090 3.66349 3.76975 3.82922 3.93816 3.97094 4.00107 4.10966 4.20294 4.25805 4.26992 4.30631 4.41501 4.49583 4.55910 4.57152 4.58356 4.64114 4.71879 4.76912 4.79695 4.84923 4.87962 4.91866 4.99377 5.05067 5.13809 5.14818 5.27951 5.32981 5.40518 5.44421 5.45831 5.48380 5.53482 5.65468 5.74804 6.04847 6.05551 6.77536 7.27523 7.32589 7.43405 8.87074 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.001626 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.583119 B =17213.920262 C =17292.507971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.101 4.101 5 C 0.069 3.931 6 N -0.461 5.461 7 C 0.031 3.969 8 C 0.354 3.646 9 N -0.331 5.331 10 N -0.288 5.288 11 C 0.268 3.732 12 C 0.015 3.985 13 C 0.019 3.981 14 N -0.271 5.271 15 C 0.122 3.878 16 C 0.021 3.979 17 C -0.542 4.542 18 H 0.082 0.918 19 C 0.003 3.997 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.256 1.256 25 N -0.097 5.097 26 N -0.272 5.272 27 N -0.453 5.453 28 C 0.081 3.919 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.232 0.768 44 H 0.110 0.890 45 H 0.134 0.866 46 H -0.006 1.006 47 H 0.002 0.998 48 H 0.264 0.736 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 26.109 -15.559 30.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.139 4.139 5 C -0.057 4.057 6 N -0.187 5.187 7 C -0.116 4.116 8 C -0.003 4.003 9 N -0.176 5.176 10 N -0.132 5.132 11 C 0.000 4.000 12 C -0.125 4.125 13 C -0.137 4.137 14 N -0.062 5.062 15 C 0.004 3.996 16 C -0.017 4.017 17 C -0.580 4.580 18 H 0.100 0.900 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.180 1.180 25 N -0.077 5.077 26 N -0.140 5.140 27 N -0.144 5.144 28 C -0.060 4.060 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.249 0.751 44 H 0.128 0.872 45 H 0.152 0.848 46 H 0.012 0.988 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.107 0.893 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.143 25.995 -14.797 30.350 hybrid contribution 0.073 -1.231 0.195 1.248 sum 5.217 24.764 -14.602 29.218 Atomic orbital electron populations 1.21912 0.95578 1.01284 1.02074 1.21070 0.95674 0.96822 0.97747 1.21798 1.01285 0.94973 1.02053 1.21626 1.02010 0.91409 0.98809 1.22309 1.00107 0.95040 0.88243 1.58927 1.10307 1.07176 1.42322 1.22596 0.82495 1.04863 1.01599 1.22557 0.98352 0.93743 0.85645 1.74500 1.20349 0.97566 1.25206 1.74266 1.12581 1.18873 1.07446 1.20926 1.01985 0.83759 0.93319 1.18565 1.07084 0.93030 0.93811 1.24061 0.98774 0.94204 0.96629 1.47851 1.34233 1.13891 1.10210 1.22705 1.00107 0.73541 1.03241 1.19188 0.95387 0.95217 0.91946 1.21452 1.29006 0.98404 1.09151 0.89999 1.25989 0.95209 1.03295 0.95096 1.70128 1.35966 1.38579 1.12513 0.85354 0.79354 0.78590 0.77189 1.19788 1.21473 1.17980 1.78257 1.20005 0.93650 1.15762 1.75217 1.11367 1.17459 1.09982 1.46360 1.40077 1.11083 1.16886 1.22312 1.03891 0.98725 0.81096 0.93624 0.92436 0.92370 0.91309 0.92076 0.92475 0.92431 0.90673 0.90179 0.91544 0.93472 0.86654 0.91856 0.94042 0.75147 0.87165 0.84762 0.98769 0.97932 0.92718 0.89130 0.89305 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.95 71.98 0.64 -0.98 16 2 C -0.09 -0.88 2.92 -10.79 -0.03 -0.91 16 3 C -0.14 -1.07 9.19 71.98 0.66 -0.41 16 4 C -0.10 -0.99 4.60 30.60 0.14 -0.85 16 5 C 0.07 1.08 4.56 86.30 0.39 1.47 16 6 N -0.46 -8.29 4.74 -730.82 -3.47 -11.75 16 7 C 0.03 0.44 9.18 127.69 1.17 1.61 16 8 C 0.35 8.99 6.41 260.05 1.67 10.66 16 9 N -0.33 -10.16 12.09 -57.93 -0.70 -10.87 16 10 N -0.29 -9.51 12.21 -50.78 -0.62 -10.13 16 11 C 0.27 8.43 7.94 136.28 1.08 9.51 16 12 C 0.02 0.50 7.07 40.93 0.29 0.79 16 13 C 0.02 0.58 11.54 83.81 0.97 1.54 16 14 N -0.27 -9.53 3.43 -346.69 -1.19 -10.72 16 15 C 0.12 4.25 6.39 86.38 0.55 4.80 16 16 C 0.02 1.00 5.10 29.85 0.15 1.15 16 17 C -0.54 -27.73 9.11 25.60 0.23 -27.49 16 18 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 19 C 0.00 0.15 5.46 84.65 0.46 0.62 16 20 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 21 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 N -0.10 -3.86 12.88 37.02 0.48 -3.38 16 26 N -0.27 -9.90 10.91 -49.49 -0.54 -10.44 16 27 N -0.45 -12.06 3.23 -539.92 -1.75 -13.81 16 28 C 0.08 1.65 10.74 127.77 1.37 3.02 16 29 H 0.04 0.59 6.56 -2.38 -0.02 0.57 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.08 0.61 6.68 -2.39 -0.02 0.59 16 38 H 0.07 1.20 6.48 -2.39 -0.02 1.18 16 39 H 0.05 0.82 8.07 -2.39 -0.02 0.80 16 40 H 0.12 0.93 6.75 -2.39 -0.02 0.92 16 41 H 0.06 0.99 8.06 -2.39 -0.02 0.97 16 42 H 0.04 0.65 8.07 -2.39 -0.02 0.63 16 43 H 0.23 5.28 8.06 -2.91 -0.02 5.26 16 44 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.13 3.75 8.06 -2.39 -0.02 3.73 16 46 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 47 H 0.00 0.12 8.11 -2.39 -0.02 0.11 16 48 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 2.08 7.01 -2.39 -0.02 2.06 16 51 H 0.12 1.77 8.11 -2.38 -0.02 1.75 16 Total: -1.00 -69.98 420.29 5.20 -64.78 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.91 Total: 12.93 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 9.76 Total: 4.53 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -7.50 Total: -125.83 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -69.98 5.20 -64.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262917227.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.268 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds